HHsearch alignment for GI: 254780378 and conserved domain: TIGR02489

>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00  E-value=0  Score=351.28  Aligned_cols=142  Identities=37%  Similarity=0.601  Sum_probs=128.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r    1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN   80 (262)
Q Consensus         1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~   80 (262)
T Consensus         2 lRSLWSGVsgmQAHQvAlDVEgNNIaNVNTtGFKYSRA~F~dMlSQ~~~IATsPy~nGlGG--QNd~~iGLGvsi~sTTk   79 (877)
T TIGR02489         2 LRSLWSGVSGMQAHQVALDVEGNNIANVNTTGFKYSRADFGDMLSQVKKIATSPYDNGLGG--QNDLSIGLGVSIDSTTK   79 (877)
T ss_pred             CCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHEEEECCCCCCCCC--CCCCEECCEECCCCCEE
T ss_conf             5101113101102013331044640331345500430431124244000230757877878--77530012100044214


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCE-EEEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             335787332652121232377526531489857-7875212235258834146676104431013
Q gi|254780378|r   81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTV-MYTRAGSFNIDSKGQLVTADGNTLVPGIVIP  144 (262)
Q Consensus        81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~-~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p  144 (262)
T Consensus        80 ifsQGs~Q~T~~ktDvAI~GDGFFivS~dgG~Tn~yTRdGaF~fDA~GN~Vnn~GyiVQGW~rP~  144 (877)
T TIGR02489        80 IFSQGSVQDTNSKTDVAIEGDGFFIVSDDGGLTNAYTRDGAFKFDAAGNLVNNSGYIVQGWVRPD  144 (877)
T ss_pred             EEECCCEECCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEECCCCCC
T ss_conf             85348530367751078868355998088884255322773002445540303742787751687