HHsearch alignment for GI: 254780378 and conserved domain: TIGR02489
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00 E-value=0 Score=351.28 Aligned_cols=142 Identities=37% Similarity=0.601 Sum_probs=128.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
T Consensus 2 lRSLWSGVsgmQAHQvAlDVEgNNIaNVNTtGFKYSRA~F~dMlSQ~~~IATsPy~nGlGG--QNd~~iGLGvsi~sTTk 79 (877)
T TIGR02489 2 LRSLWSGVSGMQAHQVALDVEGNNIANVNTTGFKYSRADFGDMLSQVKKIATSPYDNGLGG--QNDLSIGLGVSIDSTTK 79 (877)
T ss_pred CCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHEEEECCCCCCCCC--CCCCEECCEECCCCCEE
T ss_conf 5101113101102013331044640331345500430431124244000230757877878--77530012100044214
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCE-EEEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 335787332652121232377526531489857-7875212235258834146676104431013
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTV-MYTRAGSFNIDSKGQLVTADGNTLVPGIVIP 144 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~-~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p 144 (262)
T Consensus 80 ifsQGs~Q~T~~ktDvAI~GDGFFivS~dgG~Tn~yTRdGaF~fDA~GN~Vnn~GyiVQGW~rP~ 144 (877)
T TIGR02489 80 IFSQGSVQDTNSKTDVAIEGDGFFIVSDDGGLTNAYTRDGAFKFDAAGNLVNNSGYIVQGWVRPD 144 (877)
T ss_pred EEECCCEECCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEECCCCCC
T ss_conf 85348530367751078868355998088884255322773002445540303742787751687