HHsearch alignment for GI: 254780378 and conserved domain: TIGR02490

>TIGR02490 flgF flagellar basal-body rod protein FlgF; InterPro: IPR012836 Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. This entry contains proteins only from the proteobacteria, and not in the epsilon subdivision (where the architecture of the related FlgE protein differs substantially from other lineages).; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00  E-value=0  Score=450.02  Aligned_cols=241  Identities=29%  Similarity=0.445  Sum_probs=209.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             489999999999996599977542177734000022299999-8764025676655566545666311442021123223
Q gi|254780378|r    3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFL-YQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNV   81 (262)
Q Consensus         3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~   81 (262)
T Consensus         1 llYtAMsGA~~~l~qQ~~~ANNLAN~~T~GFradl~~~ra~~Mv---~G~G~pt--------------R~~v~~~~~G~D   63 (254)
T TIGR02490         1 LLYTAMSGAKRTLEQQAVHANNLANASTTGFRADLEAARAVPMV---DGDGLPT--------------RTFVLASTPGAD   63 (254)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC---CCCCCCH--------------HHHHHCCCCCCC
T ss_conf             90013668999999999998654225706789999886630000---2798405--------------664221353678


Q ss_pred             CCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCE
Q ss_conf             3578733265212123237752653148985778752122352588341466761044----310135653221013312
Q gi|254780378|r   82 YTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP----GIVIPEETREIKVSRSGQ  157 (262)
Q Consensus        82 ~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~----~~~~p~~~~~i~i~~dG~  157 (262)
T Consensus        64 ~~~G~~~~TGR~LDvA~~G~Gw~AVq~pdG~EAYTR~G~l~~da~G~L~t~~G~PVlG~gGgPI~~P~P~~~~~Ig~DGT  143 (254)
T TIGR02490        64 FSPGSLQTTGRDLDVALQGDGWIAVQAPDGSEAYTRAGNLQVDANGTLQTASGHPVLGEGGGPITIPPPYSKIEIGADGT  143 (254)
T ss_pred             CCCCCCEECCCCCCEEECCCCEEEEECCCCCEECEECCCEEECCCCCEEECCCCCEEECCCCEEEECCCCCEEEECCCCE
T ss_conf             88886023487300446488528987799586111427610165541311178737507986145368876488717761


Q ss_pred             EEECCCCC--CCCCCCCCCCEEECCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf             55215886--54322211000002662---00100688643346666552000246776206860730010234999999
Q gi|254780378|r  158 ILAVTGKN--SDFQPVGQLLIANFINE---AGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEIS  232 (262)
Q Consensus       158 I~~~~~~~--~~~~~i~~i~l~~f~n~---~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv  232 (262)
T Consensus       144 is~~p~G~~~~~~~~vgrlKLV~-P~~qPR~~l~kg~DGLfR~~~~~~~~pG~~~~aD~~v~v~~g~LEgSNVnav~emv  222 (254)
T TIGR02490       144 ISVIPPGDPPNAVQEVGRLKLVK-PDPQPRNQLQKGEDGLFRVKDQAGTDPGGPAAADESVRVVSGALEGSNVNAVEEMV  222 (254)
T ss_pred             EEEECCCCCCCCHHHCCCCCCCC-CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHH
T ss_conf             88865888975232403223458-78773552425888423336877778898656688634506855477752889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999999999998715
Q gi|254780378|r  233 EMISAQRAYEMNSKVIEAADEMSSLITKM  261 (262)
Q Consensus       233 ~lI~~qR~ye~n~k~i~t~Dem~~~~~~l  261 (262)
T Consensus       223 ~mI~l~RqFE~Q~Kmm~tA~~na~aan~L  251 (254)
T TIGR02490       223 SMISLSRQFEMQVKMMKTAEDNAQAANRL  251 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99987534677889998787889999884