HHsearch alignment for GI: 254780378 and conserved domain: TIGR02490
>TIGR02490 flgF flagellar basal-body rod protein FlgF; InterPro: IPR012836 Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. This entry contains proteins only from the proteobacteria, and not in the epsilon subdivision (where the architecture of the related FlgE protein differs substantially from other lineages).; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00 E-value=0 Score=450.02 Aligned_cols=241 Identities=29% Similarity=0.445 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 489999999999996599977542177734000022299999-8764025676655566545666311442021123223
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFL-YQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNV 81 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~ 81 (262)
T Consensus 1 llYtAMsGA~~~l~qQ~~~ANNLAN~~T~GFradl~~~ra~~Mv---~G~G~pt--------------R~~v~~~~~G~D 63 (254)
T TIGR02490 1 LLYTAMSGAKRTLEQQAVHANNLANASTTGFRADLEAARAVPMV---DGDGLPT--------------RTFVLASTPGAD 63 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC---CCCCCCH--------------HHHHHCCCCCCC
T ss_conf 90013668999999999998654225706789999886630000---2798405--------------664221353678
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCE
Q ss_conf 3578733265212123237752653148985778752122352588341466761044----310135653221013312
Q gi|254780378|r 82 YTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP----GIVIPEETREIKVSRSGQ 157 (262)
Q Consensus 82 ~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~----~~~~p~~~~~i~i~~dG~ 157 (262)
T Consensus 64 ~~~G~~~~TGR~LDvA~~G~Gw~AVq~pdG~EAYTR~G~l~~da~G~L~t~~G~PVlG~gGgPI~~P~P~~~~~Ig~DGT 143 (254)
T TIGR02490 64 FSPGSLQTTGRDLDVALQGDGWIAVQAPDGSEAYTRAGNLQVDANGTLQTASGHPVLGEGGGPITIPPPYSKIEIGADGT 143 (254)
T ss_pred CCCCCCEECCCCCCEEECCCCEEEEECCCCCEECEECCCEEECCCCCEEECCCCCEEECCCCEEEECCCCCEEEECCCCE
T ss_conf 88886023487300446488528987799586111427610165541311178737507986145368876488717761
Q ss_pred EEECCCCC--CCCCCCCCCCEEECCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 55215886--54322211000002662---00100688643346666552000246776206860730010234999999
Q gi|254780378|r 158 ILAVTGKN--SDFQPVGQLLIANFINE---AGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEIS 232 (262)
Q Consensus 158 I~~~~~~~--~~~~~i~~i~l~~f~n~---~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv 232 (262)
T Consensus 144 is~~p~G~~~~~~~~vgrlKLV~-P~~qPR~~l~kg~DGLfR~~~~~~~~pG~~~~aD~~v~v~~g~LEgSNVnav~emv 222 (254)
T TIGR02490 144 ISVIPPGDPPNAVQEVGRLKLVK-PDPQPRNQLQKGEDGLFRVKDQAGTDPGGPAAADESVRVVSGALEGSNVNAVEEMV 222 (254)
T ss_pred EEEECCCCCCCCHHHCCCCCCCC-CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHH
T ss_conf 88865888975232403223458-78773552425888423336877778898656688634506855477752889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999998715
Q gi|254780378|r 233 EMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 233 ~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
T Consensus 223 ~mI~l~RqFE~Q~Kmm~tA~~na~aan~L 251 (254)
T TIGR02490 223 SMISLSRQFEMQVKMMKTAEDNAQAANRL 251 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987534677889998787889999884