Query gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 262
No_of_seqs 139 out of 2802
Neff 7.2
Searched_HMMs 39220
Date Sun May 29 16:15:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780378.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02488 flgG_G_neg flagellar 100.0 0 0 613.7 17.9 259 3-262 1-263 (263)
2 COG4786 FlgG Flagellar basal b 100.0 0 0 528.9 20.8 259 1-262 2-264 (265)
3 PRK12691 flgG flagellar basal 100.0 0 0 526.2 21.7 261 1-262 1-261 (262)
4 PRK12693 flgG flagellar basal 100.0 0 0 518.7 21.3 259 1-261 2-260 (261)
5 PRK12816 flgG flagellar basal 100.0 0 0 516.1 22.1 260 1-262 2-263 (264)
6 PRK12692 flgG flagellar basal 100.0 0 0 511.8 22.2 260 1-261 1-260 (262)
7 PRK12694 flgG flagellar basal 100.0 0 0 511.4 21.6 259 1-261 2-260 (260)
8 PRK12636 flgG flagellar basal 100.0 0 0 504.6 21.1 257 1-262 2-262 (263)
9 PRK12817 flgG flagellar basal 100.0 0 0 482.8 21.1 249 1-262 2-260 (261)
10 PRK12689 flgF flagellar basal 100.0 0 0 473.2 19.5 242 1-260 2-246 (253)
11 PRK12818 flgG flagellar basal 100.0 0 0 456.6 20.3 242 1-260 2-250 (255)
12 PRK12640 flgF flagellar basal 100.0 0 0 455.5 19.3 237 1-262 2-243 (246)
13 PRK12690 flgF flagellar basal 100.0 0 0 452.4 19.2 228 1-260 2-233 (237)
14 PRK05682 flgE flagellar hook p 100.0 0 0 451.3 16.3 245 3-262 2-414 (414)
15 TIGR02490 flgF flagellar basal 100.0 0 0 450.0 16.8 241 3-261 1-251 (254)
16 PRK08425 flgE flagellar hook p 100.0 0 0 452.6 14.1 136 1-139 2-138 (716)
17 PRK12819 flgG flagellar basal 100.0 0 0 442.5 20.6 244 1-261 1-255 (257)
18 PRK12642 flgF flagellar basal 100.0 0 0 443.9 19.0 230 1-260 2-235 (241)
19 TIGR03506 FlgEFG_subfam fagell 100.0 0 0 440.8 16.0 227 2-244 1-231 (231)
20 PRK06803 flgE flagellar hook p 100.0 0 0 441.2 14.3 237 3-261 2-397 (398)
21 PRK12637 flgE flagellar hook p 100.0 0 0 434.9 14.5 239 3-262 2-473 (473)
22 PRK12641 flgF flagellar basal 100.0 0 0 427.3 20.0 239 1-261 2-247 (252)
23 PRK05841 flgE flagellar hook p 100.0 0 0 427.0 14.8 253 1-262 2-604 (605)
24 COG1749 FlgE Flagellar hook pr 100.0 0 0 410.8 12.0 247 1-262 2-422 (423)
25 COG4787 FlgF Flagellar basal b 100.0 0 0 354.6 16.4 240 2-261 3-247 (251)
26 TIGR02489 flgE_epsilon flagell 100.0 0 0 351.3 4.4 142 1-144 2-144 (877)
27 PRK12643 flgF flagellar basal 100.0 0 0 319.1 13.4 200 1-222 2-206 (209)
28 PRK05681 flgC flagellar basal 99.8 2.3E-19 5.8E-24 137.2 8.6 45 217-261 92-136 (139)
29 PRK12632 flgC flagellar basal 99.8 3.6E-19 9.3E-24 136.0 9.5 45 217-261 83-127 (130)
30 PRK07739 flgK flagellar hook-a 99.8 2.6E-19 6.6E-24 136.9 4.8 70 3-81 7-76 (500)
31 PRK12628 flgC flagellar basal 99.8 7.6E-18 1.9E-22 127.9 11.5 45 217-261 94-138 (140)
32 PRK12630 flgC flagellar basal 99.8 1.1E-17 2.9E-22 126.9 12.3 45 217-261 97-141 (143)
33 PRK06802 flgC flagellar basal 99.8 1.6E-17 4E-22 126.0 11.7 45 217-261 94-138 (141)
34 TIGR01395 FlgC flagellar basal 99.7 1.5E-17 4E-22 126.1 9.4 45 217-261 101-145 (147)
35 PRK12629 flgC flagellar basal 99.7 3.3E-17 8.5E-22 124.0 10.5 45 217-261 89-133 (135)
36 PRK12782 flgC flagellar basal 99.7 2.8E-17 7.2E-22 124.5 10.1 45 217-261 91-135 (138)
37 PRK12631 flgC flagellar basal 99.7 1.1E-16 2.8E-21 120.9 11.3 45 217-261 92-136 (138)
38 COG1558 FlgC Flagellar basal b 99.7 1.9E-16 4.9E-21 119.4 7.9 46 216-261 90-135 (137)
39 PRK07191 flgK flagellar hook-a 99.6 1.3E-15 3.4E-20 114.3 6.1 66 1-82 1-66 (456)
40 PRK06799 flgK flagellar hook-a 99.6 8.1E-15 2.1E-19 109.5 6.8 67 2-82 4-70 (431)
41 PRK07521 flgK flagellar hook-a 99.5 2.1E-14 5.5E-19 107.0 6.1 41 2-42 5-45 (482)
42 PRK06003 flgB flagellar basal 99.1 8.1E-10 2.1E-14 79.1 11.1 41 4-44 7-48 (126)
43 PRK12624 flgB flagellar basal 99.1 1.4E-10 3.6E-15 83.7 7.1 48 2-49 9-56 (143)
44 PRK06665 flgK flagellar hook-a 99.1 8.9E-11 2.3E-15 85.0 4.1 71 3-82 7-77 (628)
45 PRK08471 flgK flagellar hook-a 99.0 2.4E-10 6.2E-15 82.3 4.0 42 221-262 570-611 (612)
46 PRK05680 flgB flagellar basal 99.0 1.1E-09 2.9E-14 78.2 7.3 46 3-48 8-53 (137)
47 PRK12622 flgB flagellar basal 99.0 1.9E-09 4.8E-14 76.9 7.4 47 2-48 6-52 (135)
48 PRK08871 flgK flagellar hook-a 98.9 8E-10 2E-14 79.2 4.5 42 221-262 585-626 (626)
49 PRK12626 flgB flagellar basal 98.9 2.1E-08 5.5E-13 70.5 11.3 46 4-49 9-54 (162)
50 PRK12619 flgB flagellar basal 98.9 4.4E-09 1.1E-13 74.7 7.4 46 3-48 8-53 (130)
51 PRK12621 flgB flagellar basal 98.9 4.8E-09 1.2E-13 74.5 7.4 45 4-48 9-53 (136)
52 pfam06429 DUF1078 Domain of un 98.9 2.3E-09 5.8E-14 76.4 5.3 39 223-261 1-39 (39)
53 PRK12714 flgK flagellar hook-a 98.9 1E-09 2.6E-14 78.5 3.5 66 1-82 1-66 (624)
54 PRK12715 flgK flagellar hook-a 98.9 6.2E-10 1.6E-14 79.8 2.3 67 1-83 1-67 (649)
55 COG1815 FlgB Flagellar basal b 98.9 4.3E-09 1.1E-13 74.8 6.3 47 2-48 6-52 (133)
56 PRK12623 flgB flagellar basal 98.9 4.7E-09 1.2E-13 74.5 6.5 43 4-46 13-55 (131)
57 PRK12620 flgB flagellar basal 98.9 3.4E-09 8.8E-14 75.3 5.6 45 3-47 8-52 (132)
58 PRK06797 flgB flagellar basal 98.9 3.4E-09 8.6E-14 75.4 5.4 39 9-47 10-48 (135)
59 PRK12625 flgB flagellar basal 98.8 9.3E-09 2.4E-13 72.7 6.9 44 3-46 8-51 (132)
60 PRK05683 flgK flagellar hook-a 98.8 2.6E-09 6.5E-14 76.1 3.7 39 222-260 636-674 (676)
61 PRK06945 flgK flagellar hook-a 98.8 3.8E-09 9.8E-14 75.0 4.5 41 221-261 608-648 (649)
62 TIGR02492 flgK_ends flagellar 98.8 2.6E-09 6.6E-14 76.0 3.0 76 3-88 2-77 (495)
63 PRK08147 flgK flagellar hook-a 98.8 5.2E-09 1.3E-13 74.2 3.9 43 220-262 505-547 (547)
64 PRK06004 flgB flagellar basal 98.8 1.2E-08 3.2E-13 71.9 5.3 39 223-261 87-125 (126)
65 PRK08147 flgK flagellar hook-a 98.7 1.6E-08 4.1E-13 71.3 5.5 64 3-82 4-67 (547)
66 PRK12685 flgB flagellar basal 98.7 2.4E-08 6E-13 70.2 6.2 43 3-45 8-50 (116)
67 PRK08871 flgK flagellar hook-a 98.7 1.9E-08 5E-13 70.7 5.6 65 3-83 5-69 (626)
68 PRK07182 flgB flagellar basal 98.7 3.8E-08 9.7E-13 69.0 6.4 46 3-48 8-53 (148)
69 PRK08471 flgK flagellar hook-a 98.7 3E-08 7.6E-13 69.6 5.5 64 3-82 7-70 (612)
70 pfam00460 Flg_bb_rod Flagella 98.6 1.3E-08 3.3E-13 71.8 2.6 31 4-34 1-31 (31)
71 TIGR02492 flgK_ends flagellar 98.6 6.1E-08 1.6E-12 67.7 5.4 48 214-261 448-495 (495)
72 COG1256 FlgK Flagellar hook-as 98.6 2.9E-08 7.5E-13 69.6 3.8 64 2-81 5-68 (552)
73 PRK06945 flgK flagellar hook-a 98.6 9.3E-08 2.4E-12 66.6 5.5 64 4-83 5-68 (649)
74 PRK12627 flgB flagellar basal 98.6 1.6E-07 4E-12 65.2 6.6 38 222-259 88-125 (128)
75 PRK05683 flgK flagellar hook-a 98.5 2.2E-07 5.7E-12 64.3 5.5 64 3-82 3-66 (676)
76 PRK12714 flgK flagellar hook-a 98.5 2.5E-07 6.4E-12 64.0 5.4 43 219-261 580-622 (624)
77 PRK06665 flgK flagellar hook-a 98.5 2.8E-07 7.2E-12 63.7 5.5 40 221-260 585-624 (628)
78 PRK12715 flgK flagellar hook-a 98.5 2.7E-07 6.9E-12 63.8 5.4 40 222-261 608-647 (649)
79 COG1256 FlgK Flagellar hook-as 98.3 9.2E-07 2.3E-11 60.6 5.4 48 215-262 504-551 (552)
80 TIGR01396 FlgB flagellar basal 96.7 0.002 5E-08 40.3 3.6 45 3-47 4-48 (134)
81 PRK12627 flgB flagellar basal 94.0 0.15 3.8E-06 28.9 5.4 42 4-45 8-50 (128)
82 COG1815 FlgB Flagellar basal b 93.3 0.23 6E-06 27.7 5.4 40 220-259 91-130 (133)
83 PRK06004 flgB flagellar basal 92.8 0.32 8.2E-06 26.9 5.6 40 8-47 3-45 (126)
84 PRK05680 flgB flagellar basal 92.2 0.4 1E-05 26.3 5.4 41 220-260 94-134 (137)
85 TIGR01857 FGAM-synthase phosph 79.0 3.2 8.2E-05 20.8 4.0 80 88-197 1176-1264(1279)
86 COG1344 FlgL Flagellin and rel 75.7 5.9 0.00015 19.2 5.0 39 221-259 318-356 (360)
87 PRK12717 flgL flagellar hook-a 58.7 13 0.00034 17.0 3.8 27 225-251 488-514 (523)
88 TIGR03606 non_repeat_PQQ dehyd 57.9 13 0.00034 17.0 3.4 15 149-163 150-164 (454)
89 PRK12804 flagellin; Provisiona 57.1 14 0.00036 16.9 5.3 39 223-261 267-305 (307)
90 pfam12396 DUF3659 Protein of u 55.6 7.7 0.0002 18.4 1.9 52 121-177 7-59 (64)
91 pfam04525 DUF567 Protein of un 51.7 17 0.00043 16.4 3.1 43 96-139 23-66 (187)
92 TIGR02034 CysN sulfate adenyly 48.2 8.6 0.00022 18.2 1.2 16 103-119 82-97 (411)
93 PRK12802 flagellin; Provisiona 48.1 20 0.0005 16.0 5.4 40 222-261 241-280 (282)
94 PRK06781 amidophosphoribosyltr 47.9 6.8 0.00017 18.8 0.6 55 97-157 172-232 (471)
95 PRK12805 flagellin; Provisiona 47.3 20 0.00052 15.9 4.7 39 223-261 246-284 (287)
96 COG3435 Gentisate 1,2-dioxygen 46.6 21 0.00053 15.9 3.2 41 87-129 108-148 (351)
97 PRK07272 amidophosphoribosyltr 46.5 4.8 0.00012 19.7 -0.3 58 97-157 173-234 (484)
98 PRK06819 flagellin; Validated 45.8 21 0.00054 15.8 4.3 38 224-261 332-369 (371)
99 PRK08869 flagellin; Reviewed 45.1 22 0.00056 15.7 4.7 39 223-261 337-375 (377)
100 PRK10572 DNA-binding transcrip 43.5 21 0.00055 15.8 2.6 12 88-99 31-42 (290)
101 PRK08870 flgL flagellar hook-a 43.4 23 0.00059 15.5 3.8 31 224-254 367-397 (403)
102 TIGR00385 dsbE periplasmic pro 42.3 24 0.00062 15.4 2.9 28 79-106 102-133 (175)
103 KOG2096 consensus 42.0 22 0.00056 15.7 2.5 69 91-159 229-303 (420)
104 pfam00700 Flagellin_C Bacteria 40.7 26 0.00065 15.3 4.6 32 223-254 47-78 (84)
105 PRK08412 flgL flagellar hook-a 38.8 27 0.0007 15.1 4.0 28 224-254 741-768 (777)
106 PRK12806 flagellin; Provisiona 38.4 28 0.00071 15.1 4.3 36 225-260 436-471 (475)
107 PRK05793 amidophosphoribosyltr 37.4 12 0.0003 17.4 0.5 137 96-241 179-331 (472)
108 PRK12803 flagellin; Provisiona 37.3 29 0.00074 15.0 4.3 38 224-261 296-333 (335)
109 PRK12807 flagellin; Provisiona 36.6 30 0.00076 14.9 5.4 39 223-261 247-285 (287)
110 PRK12584 flagellin A; Reviewed 35.0 31 0.0008 14.7 4.5 36 225-260 472-507 (510)
111 pfam09695 YtfJ_HI0045 Bacteria 34.2 14 0.00034 17.0 0.4 73 82-162 81-155 (174)
112 PRK13588 flagellin B; Provisio 32.7 34 0.00088 14.5 4.6 42 7-49 84-125 (514)
113 PRK13589 flagellin; Provisiona 32.1 35 0.00089 14.5 4.5 20 8-27 85-104 (573)
114 PRK13506 formate--tetrahydrofo 32.0 35 0.0009 14.4 5.0 21 217-237 429-451 (577)
115 pfam09155 DUF1940 Domain of un 30.8 33 0.00084 14.6 1.9 29 220-248 34-64 (143)
116 PRK03708 ppnK inorganic polyph 29.4 39 0.001 14.2 2.5 23 172-194 246-268 (278)
117 COG3321 Polyketide synthase mo 29.4 4.9 0.00012 19.7 -2.5 11 109-119 207-217 (1061)
118 KOG0404 consensus 28.9 27 0.00069 15.1 1.2 14 168-181 223-236 (322)
119 COG2133 Glucose/sorbosone dehy 27.4 42 0.0011 14.0 6.5 75 90-165 114-197 (399)
120 PRK08411 flagellin; Reviewed 27.1 43 0.0011 13.9 4.4 20 8-27 85-104 (573)
121 PRK12808 flagellin; Provisiona 26.8 43 0.0011 13.9 4.1 36 225-260 422-457 (460)
122 PRK07192 flgL flagellar hook-a 26.8 43 0.0011 13.9 3.6 31 223-253 268-298 (305)
123 COG0595 mRNA degradation ribon 26.1 45 0.0011 13.8 2.6 40 85-126 133-172 (555)
124 PRK07349 amidophosphoribosyltr 25.2 26 0.00067 15.2 0.6 140 96-241 191-347 (495)
125 PRK08026 flagellin; Validated 25.0 47 0.0012 13.7 4.4 33 225-257 527-559 (566)
126 KOG3559 consensus 24.8 47 0.0012 13.7 2.1 15 101-115 89-103 (598)
127 COG3204 Uncharacterized protei 24.5 26 0.00066 15.3 0.4 21 106-127 128-148 (316)
128 PRK06437 hypothetical protein; 24.4 26 0.00066 15.3 0.4 27 119-145 28-55 (67)
129 pfam01287 eIF-5a Eukaryotic el 24.1 49 0.0012 13.6 1.8 17 96-112 10-26 (69)
130 PRK06663 flagellar hook-associ 23.7 50 0.0013 13.5 3.5 29 223-251 382-410 (420)
131 PRK07701 flgL flagellar hook-a 22.9 52 0.0013 13.4 3.7 31 223-253 263-293 (301)
132 PRK08525 amidophosphoribosyltr 22.7 43 0.0011 13.9 1.3 53 188-242 264-316 (445)
133 COG3816 Uncharacterized protei 22.4 22 0.00056 15.7 -0.2 49 92-140 43-99 (205)
134 COG1791 Uncharacterized conser 21.8 54 0.0014 13.3 3.0 27 89-115 93-119 (181)
135 PRK07631 amidophosphoribosyltr 21.7 35 0.0009 14.4 0.7 136 97-241 172-323 (475)
136 KOG1152 consensus 21.5 55 0.0014 13.3 1.7 17 177-193 558-574 (772)
137 pfam08450 SGL SMP-30/Gluconola 20.7 57 0.0015 13.2 4.8 39 91-129 86-126 (246)
No 1
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG; InterPro: IPR012834 This family consists of the FlgG protein of the flagellar apparatus in the proteobacteria and spirochetes. The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod . The rod consists of about 26 subunits of flgG in the distal portion, and flgB, flgC and flgF are thought to build up the proximal portion of the rod with about 6 subunits each.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0009426 flagellin-based flagellum basal body distal rod.
Probab=100.00 E-value=0 Score=613.66 Aligned_cols=259 Identities=49% Similarity=0.833 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 48999999999999659997754217773400002229999987640256766555665456663114420211232233
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY 82 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~ 82 (262)
+||||++||.|||.+||||||||||+||+||||+++.|+|++|+..+..|.+... .....|.+..+|.||++..+.++|
T Consensus 1 aL~tAaTGM~AQQtn~~VIsNNLANVnT~GFKk~RA~FEDL~YQ~~r~pG~q~~~-~~t~~P~G~~~G~GVr~~at~k~~ 79 (263)
T TIGR02488 1 ALWTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDLLYQTVRQPGAQSSE-QQTILPVGVQVGLGVRVVATQKLF 79 (263)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC-CCEECCCCEEECCCEEEEEEEEEE
T ss_conf 9303365588873578887763311023441212367655747731258888777-630034662435850423576664
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCC---CCCCCCCCCCCCCCCCC-CCCCCCCEE
Q ss_conf 57873326521212323775265314898577875212235258834146---67610443101356532-210133125
Q gi|254780378|r 83 TQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTA---DGNTLVPGIVIPEETRE-IKVSRSGQI 158 (262)
Q Consensus 83 ~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~---~G~~vl~~~~~p~~~~~-i~i~~dG~I 158 (262)
+||+++.|||+|||||+|+|||.|+.|||+..|||+|+|++|.||.|||+ +||+|.++|.||.++.. |+|++||.|
T Consensus 80 ~QG~lq~TgN~LDlAI~G~GFFQv~~pDG~~~YTR~G~F~~n~~G~lVt~~aq~Gy~l~P~ItiP~~A~~ni~v~~dG~V 159 (263)
T TIGR02488 80 TQGSLQNTGNDLDLAIEGEGFFQVLLPDGTTAYTRDGAFKLNAEGQLVTSSAQDGYPLQPEITIPENATSNITVGSDGEV 159 (263)
T ss_pred ECCCEECCCCCCCEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCEECCCCCCCCEECCEEECCCCCCEEEEECCCCEE
T ss_conf 16720105876004786483389866998761012467460899527644346896536624718887010698678789
Q ss_pred EECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 52158865432221100000266200100688643346666552000246776206860730010234999999999999
Q gi|254780378|r 159 LAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQ 238 (262)
Q Consensus 159 ~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~q 238 (262)
.+..++..+...+|||.|++|.||.+|+++|.|||+.|++||+|..+.|+.++++.|+||+||.||||+++||||||++|
T Consensus 160 sV~~~~~~~~~~~GQi~la~FiNPAGL~a~G~NLf~eT~ASG~p~~g~Pg~~G~G~l~QG~LE~SNV~vV~EmvdmI~aQ 239 (263)
T TIGR02488 160 SVRQGGQTEPQEVGQITLATFINPAGLEAVGENLFRETPASGDPIVGTPGLDGFGKLKQGFLEASNVNVVQEMVDMITAQ 239 (263)
T ss_pred EEEECCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCHHHHHHHHHHHH
T ss_conf 99837897200010101121015434773456410157886887688888887338881616302674456664233688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999987159
Q gi|254780378|r 239 RAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 239 R~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
||||+|+|+|+++|+||+.++++|
T Consensus 240 RAYE~NSK~i~asD~Mlq~~~~~~ 263 (263)
T TIGR02488 240 RAYEMNSKVIQASDQMLQTVSQLL 263 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 898775388887999999996129
No 2
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]
Probab=100.00 E-value=0 Score=528.95 Aligned_cols=259 Identities=47% Similarity=0.792 Sum_probs=245.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
+||||+|+|||.++|++||+|||||||+||+|||++++.|++++++.....+.+. ......|.+..+|.||++.++++
T Consensus 2 ~r~ly~a~sGM~aqq~kld~IsNNlANvNT~GfK~~~a~F~dll~q~~~~~~~~~--~~~~~~p~~~~vg~Gv~~~~~~~ 79 (265)
T COG4786 2 LRGLYTAASGMMAQQRKLDVISNNLANVNTTGFKRDRAEFEDLLYQTINTAGAPN--SNSTTSPSGGQVGLGVRVNETYT 79 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC--CCCCCCCCCCEECCCEEEEEEEE
T ss_conf 0578898778999998655652120237775504454506999999874268877--66644665525665414424786
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCC
Q ss_conf 33578733265212123237752653148985778752122352588341466761044----31013565322101331
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP----GIVIPEETREIKVSRSG 156 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~----~~~~p~~~~~i~i~~dG 156 (262)
+|+||+|++|++||||||.|+|||.|++|||+++|||+|+|++|++|+|||.+|||||+ +|.+|.+...|+|++||
T Consensus 80 ~~tqGsl~~T~n~lD~AI~g~gfF~I~~~dG~~~YTR~G~F~~d~~G~LVT~~G~~vl~~~G~~i~i~~~~~~i~i~~dG 159 (265)
T COG4786 80 VFTQGSLQKTDNPLDLAITGDGFFQIQTPDGTIAYTRDGSFTVDEEGQLVTSNGYPVLDSGGNPITIPNNAGSITIGKDG 159 (265)
T ss_pred ECCCCCCEECCCCCCEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCCCCCCCCEECCCCCEEEEECCCC
T ss_conf 40446741069854358747826999849987888527744688998788079977457888724528874455532564
Q ss_pred EEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 25521588654322211000002662001006886433466665520002467762068607300102349999999999
Q gi|254780378|r 157 QILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMIS 236 (262)
Q Consensus 157 ~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~ 236 (262)
.+.+...++.+...+++|.|+.|.||..|+|.|++||+.+..+| +....|+..+.+.|+|||||.||||+++|||+||+
T Consensus 160 ~v~~~~~~~~~~~~~g~i~lv~f~n~~gL~k~G~nl~~~t~~sg-~~~~~~~~~~~g~i~QG~lE~SNVn~v~EMt~mI~ 238 (265)
T COG4786 160 TVSVTIRGNTDPVQVGQIGLVNFDNPAGLKKIGNNLYQETAASG-PIVGVPGDNGFGAIRQGFLEASNVNVVEEMTDMIE 238 (265)
T ss_pred EEEEEECCCCCCEEEEEEEEEEECCCHHHHHCCCCCCCCCCCCC-CCCCCCCCCCCCEEEECCCHHCCCCHHHHHHHHHH
T ss_conf 47899658866147536889981380664330775310168877-75467787875527864121205679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999987159
Q gi|254780378|r 237 AQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 237 ~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
+||+||+|+|+|++.|+|++++++++
T Consensus 239 aqRayE~nsK~i~~~D~m~~~~~n~~ 264 (265)
T COG4786 239 AQRAYEANSKVIQTADEMLGKANNLL 264 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999988788665899999998654
No 3
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=0 Score=526.22 Aligned_cols=261 Identities=53% Similarity=0.847 Sum_probs=245.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
||+||+|+|||.+++++|++|||||||+||||||++.+.|++++++.....+.+... .....|.+..+|.||++.++++
T Consensus 1 lr~lyta~SGm~a~~~~ld~iaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~Gv~~~~~~~ 79 (262)
T PRK12691 1 MRALSIAATGMAAQQLNVEVISNNIANMNTTGFKRARAEFQDLLYQQERRVGAQSSD-NGTIVPTGVQLGLGVKTAAVRR 79 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCEEEEEEEE
T ss_conf 931999999999999725788888887775644747463899998774135876666-5643565541035247546887
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 33578733265212123237752653148985778752122352588341466761044310135653221013312552
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILA 160 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~ 160 (262)
||+||++++|||||||||+|+|||.|++++|+++|||+|+|++|++|+|||.+|++|++.+.+|++..++.|++||+|++
T Consensus 80 ~~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl~~i~ip~~~~~i~I~~dG~i~~ 159 (262)
T PRK12691 80 IHTQGTLSQTGNDLDLAIQGRGYFQIQLPDGETAYTRDGAFNRSADGQIVTADGYPVQPGITIPQDATSITINASGQVSV 159 (262)
T ss_pred ECCCCCCEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCEEEE
T ss_conf 51578753068821389848956888558995736544526798996489279989467610589985137878976999
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15886543222110000026620010068864334666655200024677620686073001023499999999999999
Q gi|254780378|r 161 VTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRA 240 (262)
Q Consensus 161 ~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~qR~ 240 (262)
..........+++|.|++|+||..|+++|+++|++++.+|.+....|...+.++|+||+||.||||++.|||+||++||+
T Consensus 160 ~~~g~~~~~~vg~l~l~~f~n~~~L~~~g~~lf~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Em~~mI~~qRa 239 (262)
T PRK12691 160 TLDGQTQPQVLGQITLARFTNEAGLEAIGDNLFRETPASGAPQVGVPGEDGFGTIRQGYLEASNVDVVKEITDLITAQRA 239 (262)
T ss_pred EECCCCCCEEEEEEEEEECCCHHHCEECCCCCEEECCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHHHH
T ss_conf 84688774177789998317847702158861773367788511567888722684385653446599999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999987159
Q gi|254780378|r 241 YEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 241 ye~n~k~i~t~Dem~~~~~~lr 262 (262)
||+|+|+|+++|||+++++||+
T Consensus 240 ye~n~k~i~t~De~~~~a~nll 261 (262)
T PRK12691 240 YEMNSKVISAADEMLQTTSKNL 261 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999866
No 4
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=100.00 E-value=0 Score=518.66 Aligned_cols=259 Identities=44% Similarity=0.787 Sum_probs=241.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
+|+||+|+|||.+++++|++|||||||+||||||++.+.|++++++.....+.+.. .....|.+..+|.|+++.++++
T Consensus 2 ~r~lYta~sGm~a~~~~l~viaNNlANvnT~GfK~~~~~F~~~l~~~~~~~g~~~~--~~~~~p~~~~~g~gv~~~~~~~ 79 (261)
T PRK12693 2 IRALWIAKTGLDAQQTNIDVISNNLANVNTTGFKKSRAVFEDLLYQTIRQPGAQSS--QNTTLPSGLQVGTGVRPVATQK 79 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCC--CCCCCCCCCEECCCEEECCCEE
T ss_conf 65899999999999974578888888777643385747299999876403677666--5555776530023123022212
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 33578733265212123237752653148985778752122352588341466761044310135653221013312552
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILA 160 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~ 160 (262)
+|+||++++|||||||||+|+|||.|++++|+++|||+|+|++|++|+|||.+|++|++.+.+|++..++.|++||+|++
T Consensus 80 ~fsqG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl~~i~ip~~~~~i~i~~dG~i~~ 159 (261)
T PRK12693 80 IFTQGNLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLVTSGGYPLQPEITIPENATSITIGTDGTVSV 159 (261)
T ss_pred ECCCCCEEECCCCEEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCEEEEEEECCCCCCEEEECCCCEEEE
T ss_conf 21577503069820399848807999758984647744436898997589089988665310389984047789987999
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15886543222110000026620010068864334666655200024677620686073001023499999999999999
Q gi|254780378|r 161 VTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRA 240 (262)
Q Consensus 161 ~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~qR~ 240 (262)
....+.....+++|+|++|+||..|++.|+++|+++..+|.+....|+..+.++|+||+||.||||+++|||+||++||+
T Consensus 160 ~~~g~~~~~~ig~l~l~~f~~~~~L~~~G~nlf~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Em~~mI~~qR~ 239 (261)
T PRK12693 160 TQAGQAAPQVVGQITLTDFINPAGLESIGENLYLETAASGAPVEGTPGLNGLGTLRQGFLETSNVNVVEELVNMITGQRA 239 (261)
T ss_pred EECCCCCCEEEEEEEEEEECCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHHHH
T ss_conf 85798762477799999614814533148850653477778533678878722585385654446699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999998715
Q gi|254780378|r 241 YEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 241 ye~n~k~i~t~Dem~~~~~~l 261 (262)
||+|+|+|+++|||+++++||
T Consensus 240 ye~n~K~i~t~De~l~~~~nl 260 (261)
T PRK12693 240 YEMNSKAISTADQMLQYVNQL 260 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999978999999999999862
No 5
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=0 Score=516.13 Aligned_cols=260 Identities=43% Similarity=0.732 Sum_probs=242.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
+||||+|+|||.++|++||+|||||||+||||||++.+.|++++++.....+.+.. .....|.+..+|.|+++.++++
T Consensus 2 ~r~lyta~sGm~a~q~~ldviaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~G~~~~~~~~ 79 (264)
T PRK12816 2 MRSLWTAATGMIAQQYNIDTIANNLANVNTTGFKKIRAEFEDLIYQTQVRAGTPAT--EDTLIPLGVQVGHGVKVAATQR 79 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCEEECCCEE
T ss_conf 54899999999999985788989998776665585747189998876521588765--5554666643244256222135
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEE
Q ss_conf 3357873326521212323775265314898577875212235258834146676104431013565--32210133125
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEET--REIKVSRSGQI 158 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~--~~i~i~~dG~I 158 (262)
+|+||++++|||||||||+|+|||.|++++|+++|||+|+|++|++|+|||.+|++||+++.+|... ..+.|++||.|
T Consensus 80 ~f~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~Vl~~i~~P~~~~~~~i~i~~dG~i 159 (264)
T PRK12816 80 LFEQGSLQATGLKTDVAIEGEGFFKILLPDGTYAYTRDGSFKIDSNRQLVTSNGYLLLPEIIFPEEYILNSIMISEEGIV 159 (264)
T ss_pred ECCCCCCEECCCCEEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCEE
T ss_conf 51688854069820389848948999737995638875547899998889099989278753898755564488789849
Q ss_pred EECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 52158865432221100000266200100688643346666552000246776206860730010234999999999999
Q gi|254780378|r 159 LAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQ 238 (262)
Q Consensus 159 ~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~q 238 (262)
++..+.+.+...+|+|.|+.|.+|..|++.|+++|+.+..+|.+....|...+.++|+||+||.||||+++|||+||++|
T Consensus 160 ~~~~~~~~~~~~vg~l~l~~~~np~~L~~~G~nl~~~~~~~g~~~~~~p~~~~~~~v~qG~LE~SNV~~~~EMv~mI~~q 239 (264)
T PRK12816 160 TVKVGEDIEPIELGQIELYRFVNPAGLQAIGKNLFKETVASGQEIPGTPGSEGMGKVLQGFLEMSNVSIVEEMVTMIVAQ 239 (264)
T ss_pred EEECCCCCCCEEEEEEEEEEECCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHH
T ss_conf 99538987741556778987227044331378520026667775557778787205832847622365999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999987159
Q gi|254780378|r 239 RAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 239 R~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
|+||+|+|+|+++|||++++++||
T Consensus 240 R~fe~~~K~i~t~De~~~~~~nl~ 263 (264)
T PRK12816 240 RAYEINSKAIQTSDNMLGTANNLK 263 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999998626
No 6
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=0 Score=511.84 Aligned_cols=260 Identities=55% Similarity=0.887 Sum_probs=241.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
||+||+|+|||.++|++|++|||||||+||||||++.+.|++++++.....+.+..... ...|.+..+|.|+++.++.+
T Consensus 1 lr~ly~a~sGm~a~q~~ldviaNNlANvnT~GfK~~~~~F~~~l~~~~~~~~~~~~~~~-~~~~~~~~~g~gv~~~~~~~ 79 (262)
T PRK12692 1 MRALAIAATGMSAQQLNVEVIANNIANLNTTGFKRARAEFTDLLYQAERQQGVPNQAGQ-EAVPEGAMLGLGVRAAAIRN 79 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCC-CCCCCCCEECCCEEEEEEEE
T ss_conf 92399999999999971478888998777664585746389999877521477665677-44676653234135535787
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 33578733265212123237752653148985778752122352588341466761044310135653221013312552
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILA 160 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~ 160 (262)
+|+||++++|||||||||+|+|||.|++++|+++|||+|+|++|++|+|||++||+|.+.+.+|.+..++.|++||.|++
T Consensus 80 ~~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~v~~~i~~p~~~~~i~i~~~G~i~~ 159 (262)
T PRK12692 80 LHRQGPLAQTGNPLDLAVNGRGWFQVTGPNGEINYTRAGSFNKNADGQLVTAEGYAVDPAILIPQNTTQVTINESGQVFA 159 (262)
T ss_pred ECCCCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCEEEE
T ss_conf 51578742169810389868967999747995878974537899999988178877477521688851588779855999
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15886543222110000026620010068864334666655200024677620686073001023499999999999999
Q gi|254780378|r 161 VTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRA 240 (262)
Q Consensus 161 ~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~qR~ 240 (262)
........+.+++|.|+.|++|..|+|.|+++|+.+..+|.|....|...+.++|+||+||.||||++.|||+||++||+
T Consensus 160 ~~~g~~~~~~ig~l~l~~f~~~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~EMv~mI~~qRa 239 (262)
T PRK12692 160 KLDGQVTPQLLGQLTLANFANESGLEPLGNGLYRETPASGAPVVGVPGDVGFGKIQQGYLESSNVDPVKEITELISAQRA 239 (262)
T ss_pred ECCCCCCCCEEEEEEEEECCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCHHHHHHHHHHHHHH
T ss_conf 52787675300058899615802032568862014666778544678878745383176103556599999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999998715
Q gi|254780378|r 241 YEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 241 ye~n~k~i~t~Dem~~~~~~l 261 (262)
||+|+|+|+++|||++.+++|
T Consensus 240 fe~n~k~i~~~Dem~~~~~~l 260 (262)
T PRK12692 240 FEMNSKVIQAADEMAGTVSKG 260 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999976
No 7
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=0 Score=511.43 Aligned_cols=259 Identities=43% Similarity=0.744 Sum_probs=240.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
+|+||+|+|||.+++++|++|||||||+||||||++.+.|++++++.....+. ........|.+..+|.|+++..+.+
T Consensus 2 ~~~lY~a~sgm~a~~~~ldviaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~g~~~~~~~~ 79 (260)
T PRK12694 2 NRSLWIAKTGLNAQQAQMDVISNNLANVSTNGFKRSRAVFEDLLYQTIRQPGA--QSTQQTELPSGLQLGTGVRQVATER 79 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCC--CCCCCCCCCCCCEECCCEEEEEEEE
T ss_conf 25899999999999984889988898777765564723099998876315676--6565555776520034216667887
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 33578733265212123237752653148985778752122352588341466761044310135653221013312552
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILA 160 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~ 160 (262)
+|+||++++||+||||||+|+|||.|++++|+++|||+|+|++|++|+|||.+|++||+++.+|++..++.|++||.|++
T Consensus 80 ~~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl~~i~ip~~~~~i~i~~dG~i~~ 159 (260)
T PRK12694 80 LFTQGNLQQTGNSKDVAINGQGFFQVLMPDGTTAYTRDGSFQTNAQGQLVTSSGYPLQPAITIPQNATSLTIGKDGTVSV 159 (260)
T ss_pred ECCCCCCEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEECCCCCEEECCCCCCCCCCEEEECCCCEEEE
T ss_conf 51678713169831289858957888558995748876646899999888289988740553488860578757860888
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15886543222110000026620010068864334666655200024677620686073001023499999999999999
Q gi|254780378|r 161 VTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRA 240 (262)
Q Consensus 161 ~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~qR~ 240 (262)
..........+++|.|+.|.||..|++.|+++|+.++.+|.+....|...+.++|+||+||.||||+++|||+||++||+
T Consensus 160 ~~~g~~~~~~vg~l~l~~f~n~~~L~~~G~~l~~~~~~~g~~~~~~p~~~~~~~v~qG~LE~SNVd~~~Emv~mI~~qRa 239 (260)
T PRK12694 160 TQPGSSNAVQIGQLQLATFINPAGLQAKGENLFAETTSSGAPNVSQPGLNGAGTLKQGYVEASNVNVVEELVNMIQTQRA 239 (260)
T ss_pred ECCCCCCCEEEEEEEEEEECCCHHHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHHHH
T ss_conf 51798653144689998503716642058973120367788754667878731684486752146399999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999998715
Q gi|254780378|r 241 YEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 241 ye~n~k~i~t~Dem~~~~~~l 261 (262)
||+|+|+|+++|||++++++|
T Consensus 240 ye~~~k~i~t~De~l~~~~ql 260 (260)
T PRK12694 240 YEINSKAVTTSDQMLQRLTQM 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 999988999999999998668
No 8
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional
Probab=100.00 E-value=0 Score=504.57 Aligned_cols=257 Identities=36% Similarity=0.608 Sum_probs=233.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
+|+||+|+|||.+++++||+|||||||+||||||++.+.|++++++.......+... ........+|.|+.+..+.+
T Consensus 2 ~r~lYta~sgm~a~~~~ldviaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~---~~~~~~~~~g~g~~~~~~~~ 78 (263)
T PRK12636 2 LRSMYSGISGMKNFQTKLDVIGNNIANVNTVGYKKSRVTFKDMVSQTISGASGPTAN---RGGVNSKQVGLGSTLGSIDT 78 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCCC---CCCCCCCEEECCEEEEEEEE
T ss_conf 658999999999999978899899987776544847231899988763146776656---67766512302125424675
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCC
Q ss_conf 33578733265212123237752653148985778752122352588341466761044----31013565322101331
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP----GIVIPEETREIKVSRSG 156 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~----~~~~p~~~~~i~i~~dG 156 (262)
+|+||++++||+||||||+|+|||+|++++| ++|||+|+|++|++|+|||++|++||+ +|.+|++...++|++||
T Consensus 79 ~~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~Vl~~~g~pI~ip~~~~~~~I~~dG 157 (263)
T PRK12636 79 IHTQGSLQTTGRPLDLAISGDGYFRVGSGDE-TYYTRAGNFYLDNEGNLVNADGLYLLGMNGGRINIPTDAQSFSIGPDG 157 (263)
T ss_pred ECCCCCEEECCCCCEEEECCCCEEEECCCCC-EEEEEECCEEECCCCCEECCCCCEEECCCCCCCCCCCCCCEEEECCCC
T ss_conf 4278771436982118985887788749997-479970458898998888699998068999876468887258875885
Q ss_pred EEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 25521588654322211000002662001006886433466665520002467762068607300102349999999999
Q gi|254780378|r 157 QILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMIS 236 (262)
Q Consensus 157 ~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~ 236 (262)
+|++.+.. ++.+.+++|+|+.|++|..|+|.|+++|+++..+|.+....|.+.+.++|+||+||.||||+++|||+||+
T Consensus 158 ~i~~~~~~-g~~~~vg~l~l~~f~~~~~L~~~G~~lf~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVn~~~Emv~mI~ 236 (263)
T PRK12636 158 TVSYVDAN-GENQTAGQIGLATFANPSGLEKAGNNLYRETLNSGAPQVVVPGEGGTGKIQSGALEMSNVDLSEEFTEMIV 236 (263)
T ss_pred EEEEECCC-CCCEEEEEEEEEECCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCEECCCCCHHHHHHHHHH
T ss_conf 28896079-95036789899951686873005896375136677755467787876416038476134759999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999987159
Q gi|254780378|r 237 AQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 237 ~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
+||+||+|+|+|+++|||+++++|||
T Consensus 237 ~qRaye~n~K~i~~~De~~~~~~nl~ 262 (263)
T PRK12636 237 AQRGFQANTRIITTSDEILQELVNLK 262 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999889999999999999745
No 9
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=0 Score=482.81 Aligned_cols=249 Identities=39% Similarity=0.557 Sum_probs=218.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
+||||+|+|||.+++++||+|||||||+||||||++.+.|++++++.....+.+... ......|.|+++.++++
T Consensus 2 ~rglYta~sgm~a~q~~ldvisNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~------~~~~~~g~gv~~~~~~~ 75 (261)
T PRK12817 2 LRALWNSKSGMNAQQEKLDSISNNLANVNTTGYKREDVSFQDLVQETLDRKGYPVND------RKNIITGTGVKATNWIR 75 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCCC------CCCCCCCCEEEEEEEEE
T ss_conf 568999999999999867899888987777443747112899998762246766567------87640033387402476
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC----------CCCCCCCCCCC
Q ss_conf 33578733265212123237752653148985778752122352588341466761044----------31013565322
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP----------GIVIPEETREI 150 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~----------~~~~p~~~~~i 150 (262)
||+||++++|||||||||+|+|||.|++++|+++|||+|+|++|++|+|||.+|++|+. ++.+|....++
T Consensus 76 ~~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~v~~~~~~~~~~~~~~~~~~~~~~i 155 (261)
T PRK12817 76 DNQQGNLLTTGNKTDLAIDGEGFFRVIMPDGTYAYTRAGNFNIDSNGMLVDENGNRLEIQYQPEGVGILNRNGGFDSNNI 155 (261)
T ss_pred ECCCCCEEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 54887835369842389858847999838996768868864799999989899988214566766666777777777628
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 10133125521588654322211000002662001006886433466665520002467762068607300102349999
Q gi|254780378|r 151 KVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKE 230 (262)
Q Consensus 151 ~i~~dG~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~E 230 (262)
+|++||.|++.... +....+++|.|+.|.+|..|++.|+++|++++.... .....++|+||+||.||||+++|
T Consensus 156 ~i~~dG~i~~~~~~-~~~~~vg~l~l~~~~~~~~L~~~G~~l~~~~~~~~~------~~~~~~~v~qG~LE~SNV~~~~E 228 (261)
T PRK12817 156 NIAEDGSISVKDVD-GQNKKVGKINIYNAVGDDAFISIGDNLYVPSDGAQV------FLNNDVSILQGYLENSNVDLGKE 228 (261)
T ss_pred EECCCCEEEEECCC-CCEEEEEEEEEECCCCCHHCEECCCCEEEECCCCCC------CCCCCCEEECCCEEHHCCCHHHH
T ss_conf 98999669982389-861787888886137805436758955870788877------76888618648521121739999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999999999987159
Q gi|254780378|r 231 ISEMISAQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 231 mv~lI~~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
||+||++||+||+|+|+|+++|||++.+++||
T Consensus 229 Mv~li~~qRaye~n~k~i~t~Dem~~~~nnlr 260 (261)
T PRK12817 229 MTDMIITQRAFQLSSKGIKTADEMWGIINNMR 260 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999899999999999998617
No 10
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=100.00 E-value=0 Score=473.16 Aligned_cols=242 Identities=30% Similarity=0.458 Sum_probs=210.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
+|+||+|+|||.++|++||+|||||||++|+|||++.+.|++++.........+. ......++....+++
T Consensus 2 ~~~lYta~Sgm~a~q~~ldviaNNlANvnT~GfK~~~~~F~~~l~~~~~~~~~~~----------~~~~~~~v~~~~~~~ 71 (253)
T PRK12689 2 QNALLVGLSRQMALERQLDVVANNVANVNTNGFKADRSLFQEYLMPGAHEDNFVG----------PDRRVSYVQDRGTYL 71 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCCCCCCC----------CCCCEEEEEECEEEE
T ss_conf 0289999999999997127887889867765437361127998621256667667----------776314688420475
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCE
Q ss_conf 33578733265212123237752653148985778752122352588341466761044---310135653221013312
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP---GIVIPEETREIKVSRSGQ 157 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~---~~~~p~~~~~i~i~~dG~ 157 (262)
||+||++++|||||||||+|+|||.|++++|+ +|||+|+|++|++|+|||.+|++||+ +|.+|++..+++|++||+
T Consensus 72 d~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~g~-~yTR~G~F~~d~~G~Lvt~~G~~Vl~~~gpi~~~p~~~~i~I~~dG~ 150 (253)
T PRK12689 72 DFSQGPLEQTKNPLDVAIDGDAFLAVQTPQGE-RYTRDGALEINAQGQLVTSSGYPVLGTGGPIVFQPTDTDINISPDGT 150 (253)
T ss_pred ECCCCCEEECCCCCEEEECCCCEEEEECCCCC-CEEECCCEEECCCCCEEECCCCEEECCCCCEEECCCCCCEEECCCCC
T ss_conf 52787813259830399879817999727875-06754616798998689089988167999726089886337768970
Q ss_pred EEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 55215886543222110000026620010068864334666655200024677620686073001023499999999999
Q gi|254780378|r 158 ILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISA 237 (262)
Q Consensus 158 I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~ 237 (262)
|++..+.......+|+|.|+.|++|..|++.|+++|+++...+.+ ...++|+||+||.||||+++|||+||++
T Consensus 151 i~~~~~~~~~~~~~g~l~l~~~~~~~~L~~~G~~l~~~~~~~~~~-------~~~~~v~qG~LE~SNVd~~~EM~~mI~~ 223 (253)
T PRK12689 151 VSVLEGTATTDSIRGKLRLVTFANPQQLTKEGANLYAAGAPARAP-------DTKARVEQGYIEKSNVNAVLEMTRMMEV 223 (253)
T ss_pred EEECCCCCCCCCEEEEEEEEECCCHHHHEECCCCEEECCCCCCCC-------CCCCEEECCCEECCCCCHHHHHHHHHHH
T ss_conf 897048876631345789982388677001589558578887788-------8886160273220236499999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999871
Q gi|254780378|r 238 QRAYEMNSKVIEAADEMSSLITK 260 (262)
Q Consensus 238 qR~ye~n~k~i~t~Dem~~~~~~ 260 (262)
||+||+|+|+|+++|||++++++
T Consensus 224 qRafe~n~k~i~~~Dem~~~ai~ 246 (253)
T PRK12689 224 TRTYTQVSSMLQQQSDLRKTAIE 246 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999
No 11
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=0 Score=456.57 Aligned_cols=242 Identities=30% Similarity=0.457 Sum_probs=202.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
+|+||+|+|||.+++++|++|||||||+||||||++.+.|.+|..........+. ...........++.|+++.++++
T Consensus 2 ~~~ly~a~sgm~a~~~~ldviaNNlAN~nT~GfK~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~ 79 (255)
T PRK12818 2 IRGLYTAVSGMITLEAKQDVITNNLANVNTVGYKSDNLAFKSFEDVLIENYDKKV--GNKNIKNIIGGLSMGSKIDEVNT 79 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 6689999999999998778998999877756448585006568999864104446--78666664454145226435676
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCC
Q ss_conf 335787332652121232377526531489857787521223525883414667610443-------1013565322101
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPG-------IVIPEETREIKVS 153 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~-------~~~p~~~~~i~i~ 153 (262)
+|+||++++||+||||||+|+|||+|++ +|+++|||+|+|++|++|+|||++|++||+. ++++.+...|.|+
T Consensus 80 ~~~qG~l~~Tg~~lDlAI~G~GfF~V~~-~g~~~yTR~G~f~vd~~G~Lvt~~G~~vLg~~~~~~~~~pi~~~~~~i~i~ 158 (255)
T PRK12818 80 LFTQGIIKSTDKPTDFAIQGRGFFTVER-NGRNYYTRDGHFHVDTQGYLVNDSGYYVMGINNATGAREPIYVGNKKFSTD 158 (255)
T ss_pred ECCCCCEEECCCCCEEEECCCCEEEEEC-CCCEEEEECCCEEECCCCCEECCCCCEEECCCCCCCCCCCEECCCCCEEEC
T ss_conf 4278784545981049986985899955-996589975657798997689289989207888877756651489808988
Q ss_pred CCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 33125521588654322211000002662001006886433466665520002467762068607300102349999999
Q gi|254780378|r 154 RSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISE 233 (262)
Q Consensus 154 ~dG~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~ 233 (262)
+||+|++ +...+++|.++.|.+|..|++.|+++|+.. .|.....++|+||+||.||||+++|||+
T Consensus 159 ~dG~i~~------~~~~~~~l~~~~~~~~~~L~~~G~~lf~~~---------~~~~~~~~~v~qG~LE~SNVn~~~EM~~ 223 (255)
T PRK12818 159 ASGNISL------DGVPSYKFQVADFNDYNSLKKIGDNLYSGN---------NPINNNGAIVRQNSLEKSNVNVTNEMVN 223 (255)
T ss_pred CCCEEEE------CCCCCEEEEEEECCCHHHCEECCCCCCCCC---------CCCCCCCCEEEECCEECCCCCHHHHHHH
T ss_conf 9825985------575412689981488043637688751379---------8775777338726410012689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999871
Q gi|254780378|r 234 MISAQRAYEMNSKVIEAADEMSSLITK 260 (262)
Q Consensus 234 lI~~qR~ye~n~k~i~t~Dem~~~~~~ 260 (262)
||++||+||+|+|+|+++|||+++++|
T Consensus 224 mI~~qRafe~~~k~i~t~De~~~~a~n 250 (255)
T PRK12818 224 MMTTMRSFETNQKIVQSIDETLGKAVN 250 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999
No 12
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=100.00 E-value=0 Score=455.51 Aligned_cols=237 Identities=31% Similarity=0.444 Sum_probs=200.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
+|+||+|+|||.+++++||+|||||||+||||||++...|+++.... .+. ....++....+.+
T Consensus 2 ~r~ly~a~sgm~a~q~~ldvisNNlANvnT~GfK~~~~~~~~~~~~~---~~~--------------~~~~~~~~~~~~~ 64 (246)
T PRK12640 2 DKALYTAMSGASQNLNQQAVHANNLANASTPGFRADLAQARAVPVFG---EGL--------------PTRVFALASTPGA 64 (246)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHCCC---CCC--------------CCCEEEEECCCCE
T ss_conf 14899999999999985788988888677776601456454002248---777--------------7303675034411
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCE
Q ss_conf 33578733265212123237752653148985778752122352588341466761044---310135653221013312
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP---GIVIPEETREIKVSRSGQ 157 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~---~~~~p~~~~~i~i~~dG~ 157 (262)
||+||++++||+||||||+|+|||.|++++|.++|||+|+|++|++|+|||.+|++||+ +|.+|+. ..+.|++||+
T Consensus 65 d~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~Vl~~~gpI~ip~~-~~~~I~~dG~ 143 (246)
T PRK12640 65 DFTPGPIQTTGRPLDVALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLVTANGLPVLGDGGPIAVPPG-AKITIGADGT 143 (246)
T ss_pred EECCCCEEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCEEECCCCCEECCCC-CCEEECCCCE
T ss_conf 417887355698330887699579998799854257756289999998892789896579996345898-7347757865
Q ss_pred EEECCCCC--CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 55215886--5432221100000266200100688643346666552000246776206860730010234999999999
Q gi|254780378|r 158 ILAVTGKN--SDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMI 235 (262)
Q Consensus 158 I~~~~~~~--~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI 235 (262)
|++..... .....+++|.++.+ ++..|.|.++++|+.......+ .....+|+||+||.||||+++|||+||
T Consensus 144 i~~~~~g~~~~~~~~vg~l~lv~~-~~~~l~k~~~~l~~~~~~~~~~------~~~~~~v~qG~LE~SNV~~~~Em~~mI 216 (246)
T PRK12640 144 ISILPQGDPPNTVAEVGRIKLVNP-PANQLTRGDDGLFRLKSGAPAP------ADPNVRVVSGALEGSNVNAVEEMVSMI 216 (246)
T ss_pred EEEEECCCCCCCCEEEEEEEEECC-CHHHCEECCCCCEECCCCCCCC------CCCCCEEEECCEECCCCCHHHHHHHHH
T ss_conf 999637987442124426899538-7355011489737647888777------788742764515323567999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999999987159
Q gi|254780378|r 236 SAQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 236 ~~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
++||+||+|+|+|+++|||++++++|+
T Consensus 217 ~~qRaye~n~k~i~~~Dem~~~an~l~ 243 (246)
T PRK12640 217 ALARQFEMQVKMMKTADDNAQAANQLL 243 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998999999999874
No 13
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=100.00 E-value=0 Score=452.40 Aligned_cols=228 Identities=34% Similarity=0.512 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
+|+||+|+|||.+++++|++|||||||+||||||++.+.|++++..... .+.. . ........+
T Consensus 2 ~~~~Yta~sg~~a~~~~ldviaNNlANvnT~GfK~~~~~f~~~~~~~~~---~~~~-----------~---~~~~~~~~~ 64 (237)
T PRK12690 2 DAAGYTTLTRQSGLMREMQVVANNIANSSTTGFRREGLVFSEYVKSTGG---EASL-----------S---MASAGARQT 64 (237)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCCC---CCCC-----------C---CCCCCCEEE
T ss_conf 1689999999999998678898899877774327263448999862478---8763-----------3---134663465
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCC
Q ss_conf 33578733265212123237752653148985778752122352588341466761044----31013565322101331
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP----GIVIPEETREIKVSRSG 156 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~----~~~~p~~~~~i~i~~dG 156 (262)
||+||++++||+||||||+|+|||.|++++|+ +|||+|+|++|++|+|||.+|++||+ +|.+|++..++.|++||
T Consensus 65 d~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~g~-~yTR~G~F~~d~~G~Lvt~~G~~VL~~~g~pI~ip~~~~~~~I~~dG 143 (237)
T PRK12690 65 SLEQGGLTQTGGQFDLAIEGEGFFMVETPQGE-RLTRAGAFTPNAEGELVTPDGYRLLDAGGAPIFIPPDARSVAVGADG 143 (237)
T ss_pred ECCCCCEEECCCCCEEEECCCCEEEEEECCCC-EEEECCCEEECCCCCEECCCCCEEECCCCCCEEECCCCCEEEECCCC
T ss_conf 41776845569821599858957999807983-69973627898998889389989157999834837998537998997
Q ss_pred EEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 25521588654322211000002662001006886433466665520002467762068607300102349999999999
Q gi|254780378|r 157 QILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMIS 236 (262)
Q Consensus 157 ~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~ 236 (262)
+|+. +.+++++|+|+.|++|..|++.|+++|++.... .|. ..++|+||+||.||||+++|||+||+
T Consensus 144 ~i~~------~~~~vg~l~l~~~~~~~~L~~~g~~~~~~~~~~------~~~--~~~~v~qG~LE~SNVn~~~EMv~mI~ 209 (237)
T PRK12690 144 TISA------DGQPLGQVGLFQPDDPLGLRREGGTRFRAEGGV------EPA--EGASLLQGFLEGSNVNPILEIARMIE 209 (237)
T ss_pred EEEE------CCEEEEEEEEEECCCHHHHEECCCCEECCCCCC------CCC--CCCEEEECCEECCCCCHHHHHHHHHH
T ss_conf 0965------886878888981278377057789457278887------877--78748735210122689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999871
Q gi|254780378|r 237 AQRAYEMNSKVIEAADEMSSLITK 260 (262)
Q Consensus 237 ~qR~ye~n~k~i~t~Dem~~~~~~ 260 (262)
+||+||+|+|+|+++|||++++++
T Consensus 210 ~qR~fe~~~k~i~~~De~~~~ain 233 (237)
T PRK12690 210 VQRAYELGQSFLDAEDDRIRQTIR 233 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998999999999999999
No 14
>PRK05682 flgE flagellar hook protein FlgE; Validated
Probab=100.00 E-value=0 Score=451.31 Aligned_cols=245 Identities=38% Similarity=0.673 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 48999999999999659997754217773400002229999987640256766555665456663114420211232233
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY 82 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~ 82 (262)
+||+++|||.+++++|++|||||||+||+|||++++.|++++++..... ...++|.||++..++.+|
T Consensus 2 sl~tgvSGl~a~~~~l~visnNiAN~nT~GyK~~~~~F~~~~~~~~~~~-------------~~~~~g~Gv~~~~~~~~~ 68 (414)
T PRK05682 2 SFNTGVSGLNAASNDLDVIGNNIANANTTGFKESRAEFADLYANSSSSN-------------SGSQVGLGVKTAGVAQQF 68 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCC-------------CCCCCCCCEEEEEEEEEC
T ss_conf 5889999999998601677677876775300877551678652125678-------------887434417851588763
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC-------------------CCCC
Q ss_conf 578733265212123237752653148985778752122352588341466761044-------------------3101
Q gi|254780378|r 83 TQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP-------------------GIVI 143 (262)
Q Consensus 83 ~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~-------------------~~~~ 143 (262)
+||+++.|+++||+||+|+|||.|++ +|+++|||+|+|++|++|+||+.+|++|++ +|.+
T Consensus 69 ~qG~~~~T~~~~D~ai~G~GfF~v~~-~~~~~yTR~G~F~~d~~G~Lv~~~G~~l~G~~~d~~~~~~~~~~~~~l~~I~i 147 (414)
T PRK05682 69 TQGTITSTGNSLDLAISGNGFFVVSS-NGSVFYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPNGVQNANLVPLQI 147 (414)
T ss_pred CCCCEEECCCCCEEEECCCCEEEECC-CCCEEEEECCCEEECCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCEEC
T ss_conf 77785777983217873774388648-99568885561888558819859999887045047887544334577443460
Q ss_pred CCC-----------------------------------------------------------------------------
Q ss_conf 356-----------------------------------------------------------------------------
Q gi|254780378|r 144 PEE----------------------------------------------------------------------------- 146 (262)
Q Consensus 144 p~~----------------------------------------------------------------------------- 146 (262)
|..
T Consensus 148 ~~~~~~~~~Tt~~~~~~NL~~~~~~~~~~~~~~~~~~~~~~~t~~~vyDs~G~~~~l~~~f~k~~~n~w~~~~~~~~~~~ 227 (414)
T PRK05682 148 PTTALAPKATTTVTFQGNLNSTAPVPAVTPFDPTDADTYNKSTSVTVYDSLGNSHTLDVYFVKTGDNTWQVYVYDDGKAV 227 (414)
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCCC
T ss_conf 47667864310576630147777566666667778765320345998868997489999999658980689997478765
Q ss_pred ------------------------------------------------------------------------CCCCCCCC
Q ss_conf ------------------------------------------------------------------------53221013
Q gi|254780378|r 147 ------------------------------------------------------------------------TREIKVSR 154 (262)
Q Consensus 147 ------------------------------------------------------------------------~~~i~i~~ 154 (262)
...+.|++
T Consensus 228 ~~~~~~~~~~~~~~~~~l~F~~~G~l~~~~~~~~~~~~~~~~i~ld~~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~ 307 (414)
T PRK05682 228 DGPTTPTGTAGTTTAGTLTFDSNGALTSFTIAINGGATPAGTLTLDLSGSTQQGTGFFNVSATTQDGYAPGTLTGVSIDD 307 (414)
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 66655455556565421687688724246665556778774068724564022146654221135772223046678889
Q ss_pred CCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 31255215886543222110000026620010068864334666655200024677620686073001023499999999
Q gi|254780378|r 155 SGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEM 234 (262)
Q Consensus 155 dG~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~l 234 (262)
||.|.+.+.+ +....++||+|++|.||+.|+++|+++|+++..+|++..+.|+..+.++|.+|+||.||||+.+||++|
T Consensus 308 dG~i~a~~sN-G~~~~l~qi~la~F~N~~gL~~~g~n~y~~t~~SG~~~~g~~g~~g~G~i~~g~LE~SNVDla~E~t~m 386 (414)
T PRK05682 308 DGTVVATYSN-GQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGAAGSGGFGTIQSGALESSNVDLTTELVDM 386 (414)
T ss_pred CCEEEEEECC-CCEEEEEEEEEEEECCHHHHHHHCCCEEECCCCCCCCEECCCCCCCCEEEEECCEEHHCCCHHHHHHHH
T ss_conf 9679999779-957787688788626978977524971764111587533689988712485364050017799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999987159
Q gi|254780378|r 235 ISAQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 235 I~~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
|.+||+||+|+|+|++.|||++.++|||
T Consensus 387 I~~QRaYqANskvItTsDemLq~linlK 414 (414)
T PRK05682 387 IVAQRNYQANAKTIKTQDQLLQTLVNLR 414 (414)
T ss_pred HHHHHHHHHHHEEEEEHHHHHHHHHHCC
T ss_conf 9998774674034561999999997259
No 15
>TIGR02490 flgF flagellar basal-body rod protein FlgF; InterPro: IPR012836 Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. This entry contains proteins only from the proteobacteria, and not in the epsilon subdivision (where the architecture of the related FlgE protein differs substantially from other lineages).; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00 E-value=0 Score=450.02 Aligned_cols=241 Identities=29% Similarity=0.445 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 489999999999996599977542177734000022299999-8764025676655566545666311442021123223
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFL-YQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNV 81 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~ 81 (262)
-||||+||+...++++.++||||||+||+|||+|...|+++. . ...+.|+ ...|....+-.|
T Consensus 1 llYtAMsGA~~~l~qQ~~~ANNLAN~~T~GFradl~~~ra~~Mv---~G~G~pt--------------R~~v~~~~~G~D 63 (254)
T TIGR02490 1 LLYTAMSGAKRTLEQQAVHANNLANASTTGFRADLEAARAVPMV---DGDGLPT--------------RTFVLASTPGAD 63 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC---CCCCCCH--------------HHHHHCCCCCCC
T ss_conf 90013668999999999998654225706789999886630000---2798405--------------664221353678
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCE
Q ss_conf 3578733265212123237752653148985778752122352588341466761044----310135653221013312
Q gi|254780378|r 82 YTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP----GIVIPEETREIKVSRSGQ 157 (262)
Q Consensus 82 ~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~----~~~~p~~~~~i~i~~dG~ 157 (262)
|++|++++|||||||||.|+|||+|+++||+++|||+|+|+||.+|.|+|.+|+|||+ +|.||++..+|+|++||+
T Consensus 64 ~~~G~~~~TGR~LDvA~~G~Gw~AVq~pdG~EAYTR~G~l~~da~G~L~t~~G~PVlG~gGgPI~~P~P~~~~~Ig~DGT 143 (254)
T TIGR02490 64 FSPGSLQTTGRDLDVALQGDGWIAVQAPDGSEAYTRAGNLQVDANGTLQTASGHPVLGEGGGPITIPPPYSKIEIGADGT 143 (254)
T ss_pred CCCCCCEECCCCCCEEECCCCEEEEECCCCCEECEECCCEEECCCCCEEECCCCCEEECCCCEEEECCCCCEEEECCCCE
T ss_conf 88886023487300446488528987799586111427610165541311178737507986145368876488717761
Q ss_pred EEECCCCC--CCCCCCCCCCEEECCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 55215886--54322211000002662---00100688643346666552000246776206860730010234999999
Q gi|254780378|r 158 ILAVTGKN--SDFQPVGQLLIANFINE---AGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEIS 232 (262)
Q Consensus 158 I~~~~~~~--~~~~~i~~i~l~~f~n~---~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv 232 (262)
|++...+. ...+.|+||+||+ +++ +.|.|-.|+|||..+..+...-.....+...+|..|+||+||||++.|||
T Consensus 144 is~~p~G~~~~~~~~vgrlKLV~-P~~qPR~~l~kg~DGLfR~~~~~~~~pG~~~~aD~~v~v~~g~LEgSNVnav~emv 222 (254)
T TIGR02490 144 ISVIPPGDPPNAVQEVGRLKLVK-PDPQPRNQLQKGEDGLFRVKDQAGTDPGGPAAADESVRVVSGALEGSNVNAVEEMV 222 (254)
T ss_pred EEEECCCCCCCCHHHCCCCCCCC-CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHH
T ss_conf 88865888975232403223458-78773552425888423336877778898656688634506855477752889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999998715
Q gi|254780378|r 233 EMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 233 ~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
+||..+|.||++.|||+++|++.+.+++|
T Consensus 223 ~mI~l~RqFE~Q~Kmm~tA~~na~aan~L 251 (254)
T TIGR02490 223 SMISLSRQFEMQVKMMKTAEDNAQAANRL 251 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987534677889998787889999884
No 16
>PRK08425 flgE flagellar hook protein FlgE; Validated
Probab=100.00 E-value=0 Score=452.60 Aligned_cols=136 Identities=36% Similarity=0.617 Sum_probs=120.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
||+||+++|||.+++.+|+||+|||||+||+|||+.++.|++++++.......|... .......++|.||++.++..
T Consensus 2 ~rSlytGvSGL~a~~~~mdVigNNIANvNTvGfK~sr~~F~dl~sqt~~~a~~p~~~---~gg~n~~QvG~Gv~v~si~~ 78 (716)
T PRK08425 2 LRSLWSGVSGLQAHQIAMDVEGNNIANVNTTGFKYSRASFVDMLSQTKKIATAPQGG---LGGQNPFQIGLGVSVSSTTK 78 (716)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC---CCCCCCCEEECCEEEEEEEE
T ss_conf 067777888898753000000141220564230555551888775543024566667---68867752604476667774
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCE-EEEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 335787332652121232377526531489857-78752122352588341466761044
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTV-MYTRAGSFNIDSKGQLVTADGNTLVP 139 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~-~yTR~G~f~~d~~G~Lvt~~G~~vl~ 139 (262)
+|+||+++.|++++||||+|+|||+|++++|+. +|||+|+|++|.+||||+++|++|++
T Consensus 79 ~f~QGsl~~T~~~tDlAI~G~GFFvV~~~~g~~~~YTRaG~F~~D~~G~LVn~~G~~vqG 138 (716)
T PRK08425 79 IFSQGSVQNTDKNTDLAIQGDGFFIVSPDGGITRYYTRDGDFKFDAQGNFVNNAGFVVQG 138 (716)
T ss_pred ECCCCCCEECCCCCEEEECCCEEEEEECCCCCCEEEECCCCCCCCCCCCEECCCCCEEEE
T ss_conf 325767155698411898275489983289861157037664488998678899988870
No 17
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=0 Score=442.52 Aligned_cols=244 Identities=24% Similarity=0.323 Sum_probs=203.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
|||||+|+|||.++|++||+|||||||+||+|||++.+.|+++..+.......+. ......++.|+++.++++
T Consensus 1 lrglY~a~sGm~a~q~~ldviaNNlANvnT~GfK~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~gv~~~~~~~ 73 (257)
T PRK12819 1 MNGLYIGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGA-------VTNIGSVDYAVVPAATHV 73 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCEEECCEEE
T ss_conf 9289999999999998788998999877773218352368888866530158876-------665543234136210154
Q ss_pred CCCCCCCCCCCCEEEEEEC----CCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC----CCCCCCCCCCCC
Q ss_conf 3357873326521212323----77526531489857787521223525883414667610443----101356532210
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALV----GRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPG----IVIPEETREIKV 152 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~----G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~----~~~p~~~~~i~i 152 (262)
+|+||++++|+|||||||+ |.|||.|+.++|+++|||+|+|++|++|+|||.+|++||+. |.+|.. .++.|
T Consensus 74 ~~~qG~l~~Tg~~lDlAi~~~~~g~g~F~v~~~~g~~~yTR~G~F~~d~~G~Lvt~~G~~Vl~~~g~~I~ip~~-~~i~I 152 (257)
T PRK12819 74 NLVQGNIQMTNSDTDFFLDDGPAGTSSFFVTSKNGETFLTRDGSFTLNSDRYLQTSSGAFVMGENNERIRIPEG-AKVAV 152 (257)
T ss_pred ECCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCCCCCCCCEECCCC-CEEEE
T ss_conf 03566520268863204451356785589983899678986665689899878918999831799981461899-70898
Q ss_pred CCCCEEEECCCCCCCCCCCCCC--CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 1331255215886543222110--00002662001006886433466665520002467762068607300102349999
Q gi|254780378|r 153 SRSGQILAVTGKNSDFQPVGQL--LIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKE 230 (262)
Q Consensus 153 ~~dG~I~~~~~~~~~~~~i~~i--~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~E 230 (262)
++||.|+..... ..++++ .++.+.++..|.+.|+++|.+...... +.+.+.+.|+||+||.||||++.|
T Consensus 153 ~~dG~i~~~~~~----~~~~~~~~~~v~~~~~~~l~~~g~~~~~~~~~~~~-----~~~~~~~~i~qG~LE~SNV~~~~E 223 (257)
T PRK12819 153 QADGTLYDAVTQ----NNIARLQTKTVSAEQNDRLVQRENKSFTLAEGNIA-----NLPNGTGIVKNGMLENSNVDMTKE 223 (257)
T ss_pred ECCCEEEECCCC----CEEEEEEEEEECCCCHHHHHCCCCCCEEECCCCCC-----CCCCCCCEEECCCEECCCCCHHHH
T ss_conf 259748514587----34457777775366335665057862440688766-----788876438506510003669999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHC
Q ss_conf 999999999999999999999999999-8715
Q gi|254780378|r 231 ISEMISAQRAYEMNSKVIEAADEMSSL-ITKM 261 (262)
Q Consensus 231 mv~lI~~qR~ye~n~k~i~t~Dem~~~-~~~l 261 (262)
|++||++||+||+|+|+|+++|||+++ +++|
T Consensus 224 m~~mI~~qRafe~~~K~i~t~Dem~~ka~n~l 255 (257)
T PRK12819 224 MADLMTNQRMIQASQRVMTSFDKIYEKEANEI 255 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999899899999999998975
No 18
>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=100.00 E-value=0 Score=443.89 Aligned_cols=230 Identities=28% Similarity=0.446 Sum_probs=198.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
+|+||+|+|||.+++++||+|||||||+||||||++.+.|.+++.+..... . ..+.....++
T Consensus 2 ~~~lY~a~sgm~a~~~~ldviaNNlANvnT~GfK~~~~~F~~~l~~~~~~~----------~--------~~~~~~~~~~ 63 (241)
T PRK12642 2 QSGLYVALSSQMALEKRLDTIADNVANANTVGFRAEEVKFDTIVSNKASTD----------V--------SFASAGKSYI 63 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHCCCCCC----------C--------CCCCCCCCEE
T ss_conf 058999999999999846889888987776533736244688860347787----------4--------2014774122
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCC
Q ss_conf 33578733265212123237752653148985778752122352588341466761044----31013565322101331
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP----GIVIPEETREIKVSRSG 156 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~----~~~~p~~~~~i~i~~dG 156 (262)
+++||++++|||||||||+|+|||+|++++| ++|||+|+|++|++|+|||.+|++||+ +|.+|++...+.|++||
T Consensus 64 ~~~qG~l~~Tg~~lD~AI~G~GFF~V~~~~g-~~yTR~G~F~~~~~G~Lvt~~G~~vL~~~g~pI~v~p~~~~~~I~~dG 142 (241)
T PRK12642 64 STEAGPLTKTGNPLDVAVKGDAWFSFDTPAG-QVYTRDGRFTMLETGELVSVTGYPVLDAGGAPIQLNPGGGPPRIGADG 142 (241)
T ss_pred CCCCCCEEECCCCCEEEECCCCEEEEECCCC-CEEEECCCEEECCCCCEECCCCCEEECCCCCCEEECCCCCEEEECCCC
T ss_conf 1588784666983139984883699965998-578861648898999889589989147999855978998518983796
Q ss_pred EEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 25521588654322211000002662001006886433466665520002467762068607300102349999999999
Q gi|254780378|r 157 QILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMIS 236 (262)
Q Consensus 157 ~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~ 236 (262)
.|+. ....+++|.|+.|+++..|++.|+++|++..... +... ...+.|+||+||.||||+++|||+||+
T Consensus 143 ~i~~------~~~~vg~i~l~~~~~~~~l~~~g~~~~~~~~~~~-~~~~----~~~~~v~qG~LE~SNVd~~~EM~~lI~ 211 (241)
T PRK12642 143 AIYQ------NGVQVGALGLFEIPADAGLARYGNSGVIPDKPAQ-PVVD----RNSVGVVQGYLEGSNVNAMTEMTRLIS 211 (241)
T ss_pred EEEE------CCEEEEEEEEEECCCCCCCEECCCCCEEECCCCC-CCCC----CCCCCEECCCCHHHCCCHHHHHHHHHH
T ss_conf 1953------8878888899943795003264787535078887-6657----888717757410330629999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999871
Q gi|254780378|r 237 AQRAYEMNSKVIEAADEMSSLITK 260 (262)
Q Consensus 237 ~qR~ye~n~k~i~t~Dem~~~~~~ 260 (262)
+||+||+|+|+|+++|+|++++++
T Consensus 212 ~qRafe~~~k~i~~~D~~l~~ai~ 235 (241)
T PRK12642 212 VSRAFESVSSLMRDSESSVSEAIK 235 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 19
>TIGR03506 FlgEFG_subfam fagellar hook-basal body proteins. This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog HMMs, TIGR02489, TIGR02490 and TIGR00488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.
Probab=100.00 E-value=0 Score=440.76 Aligned_cols=227 Identities=47% Similarity=0.719 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 04899999999999965999775421777340000222999998764025676655566545666311442021123223
Q gi|254780378|r 2 KAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNV 81 (262)
Q Consensus 2 r~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~ 81 (262)
.+||+|+|||.+++++|++|||||||+||||||++.+.|++++++.. ......+.|+++..++++
T Consensus 1 ~sly~a~sgm~a~~~~l~visnNlAN~nT~GfK~~~~~F~~~~~~~~---------------~~~~~~~~gv~~~~~~~~ 65 (231)
T TIGR03506 1 MALYTALSGLNAQSKALDVIANNIANANTTGFKASRAEFSDLLAQSG---------------SGSGQVGGGVRAAAVGTD 65 (231)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHCCC---------------CCCCCCCCCEEEEEEEEE
T ss_conf 94899999999999867888888887776443547241788752347---------------887755545784156876
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCE
Q ss_conf 3578733265212123237752653148985778752122352588341466761044----310135653221013312
Q gi|254780378|r 82 YTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP----GIVIPEETREIKVSRSGQ 157 (262)
Q Consensus 82 ~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~----~~~~p~~~~~i~i~~dG~ 157 (262)
|+||++++|+++|||||+|+|||+|++++|+++|||+|+|++|++|+|||.+|++||+ ++.+|+...++.|++||.
T Consensus 66 ~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lv~~~G~~vlg~~g~~~~~~~~~~~~~i~~dG~ 145 (231)
T TIGR03506 66 FSQGSLQTTGNPLDLAINGDGFFAVQTPDGSEAYTRAGSFQLDANGYLVTADGYPLLGWGGGPITIPPDAAGVEIGEDGT 145 (231)
T ss_pred CCCCCEEECCCCCEEEECCCEEEEEECCCCCEEEEECCCEEECCCCCEECCCCCEEECCCCCCCCCCCCCCEEEECCCCE
T ss_conf 38888256688321898696389998899978487645378989998887899880777888764577774169878953
Q ss_pred EEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 55215886543222110000026620010068864334666655200024677620686073001023499999999999
Q gi|254780378|r 158 ILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISA 237 (262)
Q Consensus 158 I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~ 237 (262)
|++.+.. +...++++|+|+.|++|+.|++.|+++|++++.++.+....+.....++|+||+||.||||++.||++||++
T Consensus 146 i~~~~~~-~~~~~v~~i~l~~~~~~~~L~~~g~~~~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~em~~mi~~ 224 (231)
T TIGR03506 146 VSATYSN-GQTQEVGQLALVNFPNPNGLQKEGGNLFRATDGSGAPLVGAPGTGGLGSLVQGALEGSNVDAVAEMVDMISA 224 (231)
T ss_pred EEEECCC-CCCEEEEEEEEEECCCHHHCEECCCCEEEECCCCCCCCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHH
T ss_conf 9985079-971587899999506868815858967984477777523567888823697073262026599999999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780378|r 238 QRAYEMN 244 (262)
Q Consensus 238 qR~ye~n 244 (262)
||+||+|
T Consensus 225 qR~fe~N 231 (231)
T TIGR03506 225 QRAYEAN 231 (231)
T ss_pred HHHHCCC
T ss_conf 7756089
No 20
>PRK06803 flgE flagellar hook protein FlgE; Validated
Probab=100.00 E-value=0 Score=441.19 Aligned_cols=237 Identities=34% Similarity=0.545 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 48999999999999659997754217773400002229999987640256766555665456663114420211232233
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY 82 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~ 82 (262)
+||+++|||.+++.+|+||+|||||+||+|||+.++.|++++.+. ...|+++..+..+|
T Consensus 2 S~~~gvSGl~a~~~~ldvIsNNIANvnT~GfK~s~~~F~dl~~~~---------------------~~gGv~~~~~~~~~ 60 (398)
T PRK06803 2 SFNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFASIYNGG---------------------QAGGVEVSSVSQNF 60 (398)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHCCCHHCCCCCCCHHHHHCCC---------------------CCCCEEEEEEEEEE
T ss_conf 689999999998856436635777578531075620546754766---------------------77854876777776
Q ss_pred CC-CCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCC---------------CCC--
Q ss_conf 57-873326521212323775265314898577875212235258834146676104431---------------013--
Q gi|254780378|r 83 TQ-GEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGI---------------VIP-- 144 (262)
Q Consensus 83 ~q-G~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~---------------~~p-- 144 (262)
+| |+++.|++++||||+|+|||+|++++|+.+|||+|+|++|.+|+||++.|++|+++. .+|
T Consensus 61 ~~~G~l~~T~~~~DlAI~G~GFF~V~~~~g~~~YTRaG~F~~D~~G~Lv~~~G~~l~G~~~d~~g~~~~~~~~~i~i~~~ 140 (398)
T PRK06803 61 SKGGSLTYTGRGLDLAISGGGFFVLKGSDGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAGNIQTGNVSDLQVQTA 140 (398)
T ss_pred ECCCCEEECCCCEEEEECCCCEEEEECCCCCEEEECCCEEEEEECCEEEECCCCEEECEEECCCCCCCCCCCCCEEECCC
T ss_conf 06887566698026998168679997699856675274189933787990899867453606888510266320340157
Q ss_pred -----------------------C--------------------------------------------------------
Q ss_conf -----------------------5--------------------------------------------------------
Q gi|254780378|r 145 -----------------------E-------------------------------------------------------- 145 (262)
Q Consensus 145 -----------------------~-------------------------------------------------------- 145 (262)
.
T Consensus 141 ~~~~~aTt~~~~~~nl~a~~~~~~~~~~~~~~~~~~~~~~~~~vyDs~G~~~~v~~~f~kt~~n~w~~~~~~~~~~~~~~ 220 (398)
T PRK06803 141 SLPAKATDQLDFVANLDASVTDPSVSPFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVKTATNEWAVHYTVDGGDVTPP 220 (398)
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCC
T ss_conf 66864322067886247766667656568887763001112899846897257899999658971689997578755774
Q ss_pred --------------------------------------------------------------CCCCCCCCCCCEEEECCC
Q ss_conf --------------------------------------------------------------653221013312552158
Q gi|254780378|r 146 --------------------------------------------------------------ETREIKVSRSGQILAVTG 163 (262)
Q Consensus 146 --------------------------------------------------------------~~~~i~i~~dG~I~~~~~ 163 (262)
....+.|++||.|.+.+.
T Consensus 221 ~~l~F~~~G~l~~~~~~~~~~~~~~~~~g~~~~~i~l~~~~~tq~~~~~~~~~~~qdG~~~G~l~~~~I~~dG~I~~~ys 300 (398)
T PRK06803 221 LTLQFDDTGALIPGKGSTINLHDTFNPAGASDYDIDIDYTGSTQYAADFNNSRNKSDGYTSGELNGVRIEDNGMVYATYT 300 (398)
T ss_pred EEEEECCCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCEEECCCCCCEECCCCCEEEEEEEEEEECCCCEEEEEEC
T ss_conf 47898788846457764200144457787664358864776357436654100146875543232379888986999954
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86543222110000026620010068864334666655200024677620686073001023499999999999999999
Q gi|254780378|r 164 KNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRAYEM 243 (262)
Q Consensus 164 ~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~qR~ye~ 243 (262)
++..++++||+|++|.||+.|+++|+++|+++..+|+|..+.|+..+.++|.+|+||.||||+++||++||.+||+||+
T Consensus 301 -NG~~~~lgqIala~F~Np~gL~~~G~n~f~~T~~SG~~~~g~~g~~g~G~i~~gaLE~SNVDla~Eft~mI~tQR~yqA 379 (398)
T PRK06803 301 -NGQEQLQGQVVLANFANPNGLVTVSNTAWSASNKSGQAILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQRNYQA 379 (398)
T ss_pred -CCCEEEEEEEEEEEECCHHHCCCCCCCEEECCCCCCCCEECCCCCCCCCEEEECCEEHHHCHHHHHHHHHHHHHHHHHH
T ss_conf -8743677689899733836550047945864346788676579988851283274631314099999999999876356
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999998715
Q gi|254780378|r 244 NSKVIEAADEMSSLITKM 261 (262)
Q Consensus 244 n~k~i~t~Dem~~~~~~l 261 (262)
|+|+|++.|||++.++||
T Consensus 380 NskvItT~DemlqelvN~ 397 (398)
T PRK06803 380 NAKVISTNDTMQQALFNA 397 (398)
T ss_pred HCEEEEEHHHHHHHHHHH
T ss_conf 424887489999999740
No 21
>PRK12637 flgE flagellar hook protein FlgE; Provisional
Probab=100.00 E-value=0 Score=434.91 Aligned_cols=239 Identities=35% Similarity=0.596 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 48999999999999659997754217773400002229999987640256766555665456663114420211232233
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY 82 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~ 82 (262)
|||+++|||.+++.+|++|+|||||+||+|||+..+.|++++.+ .++|.|+++..+..+|
T Consensus 2 ~~~~GvsGl~a~~~~l~vi~nNiAN~~T~gfK~~~~~F~~~~~~--------------------~~~g~g~~~~~~~~~~ 61 (473)
T PRK12637 2 GFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYAS--------------------SRVGLGVKVSAINQRF 61 (473)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHCC--------------------CCCCCCEEEEEEEEEE
T ss_conf 37789999999885532551476737760008566716675455--------------------8766734764789882
Q ss_pred CCCCCCCCCCEEEEEEC-CCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC-----------CCCCCC----
Q ss_conf 57873326521212323-77526531489857787521223525883414667610443-----------101356----
Q gi|254780378|r 83 TQGEVVHTGNNLDLALV-GRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPG-----------IVIPEE---- 146 (262)
Q Consensus 83 ~qG~l~~Tg~~lD~Ai~-G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~-----------~~~p~~---- 146 (262)
+||+++.|++++|+||+ |+|||.|.+++|+.+|||+|+|++|++||||+.+|++|+++ +.+|..
T Consensus 62 ~~G~~~~t~~~~d~ai~~g~GfF~v~~~~~~~~yTR~G~F~~d~~g~lv~~~G~~lqG~~~~~~g~~~~~i~l~~~~~~p 141 (473)
T PRK12637 62 TVGNISTTGGEYDMAIDGGKGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRLTGYPAGGVGAQPVDLQLPQGNIAP 141 (473)
T ss_pred CCCCEEECCCCCEEEEECCCEEEEEECCCCCEEEECCCCEEECCCCEEECCCCCEEECCCCCCCCCCEEEEECCCCCCCC
T ss_conf 56780667983438894697079997389966774364266879970985899887764467788740113546777587
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780378|r 147 -------------------------------------------------------------------------------- 146 (262)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (262)
T Consensus 142 ~aTt~~~~~~NL~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~~ 221 (473)
T PRK12637 142 QATSTAGLQTNLNANAKVIDPNDTPAVDGTVELDGTTYRFTNAGGTFAWVAPAPLDGTYNGGDIVIAGGAVTGDLASQPG 221 (473)
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCC
T ss_conf 43205878884067764447766645465010145125762367602220123335643455202205520133235666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780378|r 147 -------------------------------------------------------------------------------- 146 (262)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (262)
T Consensus 222 ~~~~~~~~~~~~~d~t~~~~~~~~~~~~v~ds~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~tl~fd~ 301 (473)
T PRK12637 222 YQPYKPLVAGIPFDPTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYVLDGQPMQVNGGASQTLNFDT 301 (473)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECC
T ss_conf 54433212356568777753134430698826898257899986146778774368999537873123577630588658
Q ss_pred ---------------------------------------------------------CCCCCCCCCCEEEECCCCCCCCC
Q ss_conf ---------------------------------------------------------53221013312552158865432
Q gi|254780378|r 147 ---------------------------------------------------------TREIKVSRSGQILAVTGKNSDFQ 169 (262)
Q Consensus 147 ---------------------------------------------------------~~~i~i~~dG~I~~~~~~~~~~~ 169 (262)
...+.|++||.|...+. |+..+
T Consensus 302 ~g~l~~~~~~~~~t~~~~~~~~~~~~~~~it~~~~g~Tq~~s~~~~~~~qdG~~~G~L~~~~Id~dG~I~g~yS-NG~t~ 380 (473)
T PRK12637 302 AGNLLNQPPTAQVTFANPGGNAAPADPLAITVSYNGVTQYGSDFAPKVVQNGYSSGEFMGLSVGKDGSLVAKYT-NGETQ 380 (473)
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEECCCCCCEECCCCCCCCEEEEEEECCCCEEEEEEC-CCCEE
T ss_conf 88514788742157625787767677604887266516754666512302784454156889899948999987-99598
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22110000026620010068864334666655200024677620686073001023499999999999999999999999
Q gi|254780378|r 170 PVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIE 249 (262)
Q Consensus 170 ~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~ 249 (262)
.++||+|++|.||++|+++|+++|+.+.+||++..+.|+..+.++|.+|+||.||||+.+||++||.+||+||||+|+|+
T Consensus 381 ~l~qIaLA~F~Np~GL~~~G~n~y~~T~~SG~~~~g~ag~gg~G~I~~gaLE~SNVDLa~Eft~mIvtQR~yQANSKvIt 460 (473)
T PRK12637 381 TIGTLVLANFNNVQGLQPVGNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIK 460 (473)
T ss_pred EEEEEEEEEECCHHHCEECCCCEEECCCCCCCCEECCCCCCCCCEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHCEEEE
T ss_conf 98899999616958660137963872013788557579988862172175402440799999999998765014325887
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999987159
Q gi|254780378|r 250 AADEMSSLITKMR 262 (262)
Q Consensus 250 t~Dem~~~~~~lr 262 (262)
+.|||+++++|||
T Consensus 461 TsDemLqelinLK 473 (473)
T PRK12637 461 TQDEVMQVLMNMR 473 (473)
T ss_pred EHHHHHHHHHHCC
T ss_conf 5899999997059
No 22
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=100.00 E-value=0 Score=427.25 Aligned_cols=239 Identities=23% Similarity=0.313 Sum_probs=191.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
+|++|+|+|||.+++++||+|||||||++|||||++...|......... . .........++
T Consensus 2 ~r~lY~a~sgm~a~q~~ldvisNNLANvnT~GfK~~~~~~~~~~~~~~~-----~--------------~~~~~~~~~~~ 62 (252)
T PRK12641 2 ESIIYASMTAANKLLEKQARIANNLANISTPGFKEEFELKILLPNQKNL-----N--------------SQEDNFLKEYY 62 (252)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC-----C--------------CCCCCCCCCEE
T ss_conf 3589999999999999889999999878776550638988764421345-----6--------------66653243212
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCE
Q ss_conf 33578733265212123237752653148985778752122352588341466761044---310135653221013312
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP---GIVIPEETREIKVSRSGQ 157 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~---~~~~p~~~~~i~i~~dG~ 157 (262)
+|+||++++||||||+||+|+|||.|++++|+++|||+|+|++|++|+|++. |++||+ +|.+|.+ ..+.|++||.
T Consensus 63 ~~~qG~l~~Tg~~lDlAI~G~GfF~v~~~~G~~~YTR~G~F~ld~~G~L~~~-~~~vl~~~g~i~~p~~-~~~~i~~dG~ 140 (252)
T PRK12641 63 NKNPGTLRRTNRNLDLIIKKNGWLVIKDDNGQEAYTKNGHFKINSNRKLTVQ-NHEVIGNNGNIFIPKN-ENLKISSNGY 140 (252)
T ss_pred ECCCCCEECCCCCEEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEEC-CCEEECCCCCEECCCC-CCEEECCCCE
T ss_conf 1487461016981028985897699977999678997254789899988979-9715178987027999-7268889955
Q ss_pred EEECCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 552158865--43222110000026620010068864334666655--20002467762068607300102349999999
Q gi|254780378|r 158 ILAVTGKNS--DFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGD--PIISNPDDIGFAHVKQGYLEASNVDAVKEISE 233 (262)
Q Consensus 158 I~~~~~~~~--~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~--~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~ 233 (262)
|.+...... ....+++|.++.|+++..+++.+ ++|........ +....+.....++|+|||||.||||++.|||+
T Consensus 141 i~~~~~~~~~~~~~~vg~l~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~v~qG~LE~SNVd~~~EM~~ 219 (252)
T PRK12641 141 INIIKNNHKHILEHKIGSLKLVNLDINDLIQKEN-GLFYLKKNNKLNHTNHKNIKHSSNIRLQSGMLEDSNVNLEKNMIE 219 (252)
T ss_pred EEEECCCCCCCCCEEEEEEEEEECCCHHHHHCCC-CCEECCCCCCCCCCCCCCCCCCCCCEEEECCEECCCCCHHHHHHH
T ss_conf 9994079875432155369997047533321578-832415776556666777777877248626400244669999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999999998715
Q gi|254780378|r 234 MISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 234 lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
||++||+||+|+|+|+++|||++++++|
T Consensus 220 lI~~qRaye~n~K~i~~~Dem~~~an~L 247 (252)
T PRK12641 220 MISNARQFEMQMKIISMCDQNTEYANQL 247 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999987
No 23
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=100.00 E-value=0 Score=427.01 Aligned_cols=253 Identities=29% Similarity=0.488 Sum_probs=212.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
|++||+++|||.+++.+|+||+|||||+||+|||+.++.|++++++.......+. +...+++.|+.+..+..
T Consensus 2 ~~SlysGVSGL~a~~~~ldvIgNNIANvnT~GfK~sr~~F~dl~sq~~~~~~~~~--------~~~~~~g~Gv~~~~~~~ 73 (605)
T PRK05841 2 NDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKS--------VVANDRNYGVTGSGNVL 73 (605)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCC--------CCCCCCCCCEEEEEEEE
T ss_conf 1788899999999875442330243416762115553537876654304466777--------65675356658777788
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEC-CCC-------------CEEEEEEEEEEECCCCCCCCCCCCCCCCC------
Q ss_conf 3357873326521212323775265314-898-------------57787521223525883414667610443------
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVET-PDK-------------TVMYTRAGSFNIDSKGQLVTADGNTLVPG------ 140 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~-~~G-------------~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~------ 140 (262)
+|+||+++.|++++||||+|+|||+|.. ..| +.+|||+|+|++|.+||||+++|++|++.
T Consensus 74 ~~~qGsl~~T~~~tDlAI~G~GFF~V~~~~~g~~~~~~~g~~~~~~~~YTRaG~F~~D~~G~LV~~~G~~vqG~~~~~~~ 153 (605)
T PRK05841 74 SNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEFTINKDGFSKKQDNFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIK 153 (605)
T ss_pred ECCCCCEEECCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCEEECCCCCCCC
T ss_conf 70466647569840489817717986227887411146655655662472377753899997887998879773046566
Q ss_pred -----------------------CCCCCC---------------------------------------------------
Q ss_conf -----------------------101356---------------------------------------------------
Q gi|254780378|r 141 -----------------------IVIPEE--------------------------------------------------- 146 (262)
Q Consensus 141 -----------------------~~~p~~--------------------------------------------------- 146 (262)
+.+|.+
T Consensus 154 ~g~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~p~~Tt~v~~~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (605)
T PRK05841 154 DGTLNSTARDEDIEKLHGNTLSPLQIPQDLTYQPVLSTKVGISVNLNPKDHLKGVQDFFLNDKGEIIKERFLNQDINALA 233 (605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77434556665432113675343154654545873431786867527765566553100257664222221244543223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780378|r 147 -------------------------------------------------------------------------------- 146 (262)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (262)
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 313 (605)
T PRK05841 234 NDDNEPIDAITNRKLNISIQKENGKKEDFVFTYGDAEKGENQFKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIA 313 (605)
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEECCHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEC
T ss_conf 56777556644430568885158872027998336656766303202100000135564101211467777663257503
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780378|r 147 -------------------------------------------------------------------------------- 146 (262)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (262)
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (605)
T PRK05841 314 NPSQTPITFSLSGGIADKLGLNANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKR 393 (605)
T ss_pred CCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCC
T ss_conf 78754136750453100013356653235565445433234432243377516887046546788703688676664334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780378|r 147 -------------------------------------------------------------------------------- 146 (262)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (262)
T Consensus 394 ~~~~~~~~s~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~qdG 473 (605)
T PRK05841 394 KNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHDSSDLSYQDSKLLEASQDG 473 (605)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCEEECCCCEEEECCCC
T ss_conf 55410343332067775334676301343057777666775355047871465145454555531440232014533688
Q ss_pred -----CCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCC
Q ss_conf -----5322101331255215886543222110000026620010068864334666---------65520002467762
Q gi|254780378|r 147 -----TREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSV---------SGDPIISNPDDIGF 212 (262)
Q Consensus 147 -----~~~i~i~~dG~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~---------~g~~~~~~~~~~~~ 212 (262)
...+.|++||.|...+ .|+..+.++||+|+.|.||++|+++|+++|+.+.. +|.|..+.++....
T Consensus 474 ~~~G~L~~~~Id~dG~I~g~y-sNG~~~~l~qIalA~F~N~~GL~~~G~n~y~~T~~s~~~~~~~~SG~~~~g~~g~G~~ 552 (605)
T PRK05841 474 KPRGIFRDMRIEENGVISLAF-SNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKL 552 (605)
T ss_pred CCEEEEEEEEECCCCEEEEEE-CCCCEEEEEEEEEEEECCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 003677778989994899998-6996878899989853685772322695565212554566656778734335777887
Q ss_pred --EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf --06860730010234999999999999999999999999999999987159
Q gi|254780378|r 213 --AHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 213 --~~v~qG~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
++|+.|+||.||||+.+|||+||.+||+||||+|+|+|.|||++.++|||
T Consensus 553 ~~GsI~~~aLE~SNVDLa~Eft~mIvtQR~yQANsKvITTsD~mLqelinLK 604 (605)
T PRK05841 553 KFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLK 604 (605)
T ss_pred CCCEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHCEEEEEHHHHHHHHHHHC
T ss_conf 6431624762013305899999999987652054127876899999998625
No 24
>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion]
Probab=100.00 E-value=0 Score=410.76 Aligned_cols=247 Identities=41% Similarity=0.649 Sum_probs=219.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
||+||+++|||.|++.+||+|+|||||+||+|||+.++.|++++++.......+.. .|+.++.+..
T Consensus 2 ~~s~~~gvSGm~a~q~~LdvisnNIANanT~GfK~s~~~F~dm~s~s~~g~~~~~~--------------~Gv~~s~i~~ 67 (423)
T COG1749 2 LRSFYNGVSGMNAHQFALDVISNNIANANTTGFKRSRAEFSDMFSQSLVGASTYTA--------------LGVGVSSISQ 67 (423)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC--------------CCCEEEEEEE
T ss_conf 16776666667776640332023413454521132675066320100045544676--------------6714664588
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEC-CCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC-----------------CC
Q ss_conf 3357873326521212323775265314-89857787521223525883414667610443-----------------10
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVET-PDKTVMYTRAGSFNIDSKGQLVTADGNTLVPG-----------------IV 142 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~-~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~-----------------~~ 142 (262)
+|+||+++.|++++|+||+|+|||.|.. ..+..+|||+|+|++|.+||||+..|++|++. +.
T Consensus 68 i~~qG~~~~T~~~~DlAI~G~GFF~v~~~~~~~~~yTRaG~F~~D~~g~LVn~~G~~l~G~~~~~~~~~~~~~~~~~~i~ 147 (423)
T COG1749 68 IFTQGSFQSTGSNLDLAISGNGFFIVQDDSGGTNFYTRAGSFRLDKNGYLVNPAGLYLQGYPANGVTGGINGGTTLLNIQ 147 (423)
T ss_pred ECCCCCEEECCCCCCEEEECCEEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCEE
T ss_conf 51588547647863579916717999716898458886675017678867768873797312468887511455533213
Q ss_pred CCCC----------------------------------------------------------------------------
Q ss_conf 1356----------------------------------------------------------------------------
Q gi|254780378|r 143 IPEE---------------------------------------------------------------------------- 146 (262)
Q Consensus 143 ~p~~---------------------------------------------------------------------------- 146 (262)
+|..
T Consensus 148 i~~~~~~~a~~tt~~~~~~NL~~~~~~~~~~~~~n~~~~~~~~~~~s~~~yDs~G~~~~~~~~f~k~~~~tw~v~~~~~~ 227 (423)
T COG1749 148 IPNNNGLPAKATTNVSFSANLNSGAIVPSITAPFNPTDTATYNYKTSLTVYDSLGNKHTLDVYFVKTGTNTWQVYVLVKS 227 (423)
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEECC
T ss_conf 34566767643206522101487775653467878765321145315999926895123567999447871269999435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780378|r 147 -------------------------------------------------------------------------------- 146 (262)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (262)
T Consensus 228 ~~~~p~g~a~~~~~~~l~Fd~~G~L~s~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~s~~~~~~~~~~~~~~qdGy~~G~ 307 (423)
T COG1749 228 QTGDPDGTADTGTTFTLEFDPAGALTSGEPGPTEIVGPNVAVNGATLAQGISLDLTGSTQQSTGFSLTVASTQDGYAPGN 307 (423)
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCEEEEEECCCCCCEE
T ss_conf 66688876666642578877988601278886434466656576300220453257754885130013456336755305
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf 53221013312552158865432221100000266200100688643346666552000246776206860730010234
Q gi|254780378|r 147 TREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVD 226 (262)
Q Consensus 147 ~~~i~i~~dG~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd 226 (262)
...+.|++||.|++.+. ++..++++||+|+.|.||++|+++|+|+|.++..||.+..+.|+..+++.|..|+||.||||
T Consensus 308 l~~~~I~~dG~I~~~ys-NG~~~~~gqIaLa~F~N~~GL~~~ggN~~~~t~~SG~~~~g~~g~g~~G~i~~gaLE~SNVD 386 (423)
T COG1749 308 LKDYRIDEDGVIVGVYS-NGVTQPLGQIALANFANPQGLVKEGGNVYAATNNSGAASLGAAGVGGFGKISSGALEMSNVD 386 (423)
T ss_pred EEEEEECCCCEEEEEEE-CCCEEEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCEEECCCCCEECCCH
T ss_conf 77899779978999971-88264666788773048010621589578511567861444688787302501633211211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999999999999999987159
Q gi|254780378|r 227 AVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 227 ~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
+.+|+|+||.+||.||+|+|+|+|.|+|++.++|||
T Consensus 387 ls~EltnmIvaQR~YqANsK~i~T~D~mlq~lvnLk 422 (423)
T COG1749 387 LAKELTNLIVAQRGYQANAKVITTSDQMLQTLVNLK 422 (423)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHC
T ss_conf 899999988866504445506860589999998622
No 25
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=100.00 E-value=0 Score=354.56 Aligned_cols=240 Identities=28% Similarity=0.420 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 04899999999999965999775421777340000222999998764025676655566545666311442021123223
Q gi|254780378|r 2 KAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNV 81 (262)
Q Consensus 2 r~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~ 81 (262)
|.+|+|++|......++.++||||||++|||||++...+.++. ..+ ........+..+.+..|
T Consensus 3 ~aiy~aM~aA~Q~l~~qa~~ANNLAN~STtGFraql~a~rav~-----v~g------------~~~ptrt~~~~s~pg~d 65 (251)
T COG4787 3 HAIYTAMGAASQLLEQQAVTANNLANASTTGFRAQLNAARAVQ-----VHG------------DSLPTRTFVMASTPGTD 65 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC-----CCC------------CCCCHHEEEECCCCCCC
T ss_conf 3789887888888998887751421356631789998863012-----468------------87520103541467656
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCEE
Q ss_conf 3578733265212123237752653148985778752122352588341466761044---3101356532210133125
Q gi|254780378|r 82 YTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP---GIVIPEETREIKVSRSGQI 158 (262)
Q Consensus 82 ~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~---~~~~p~~~~~i~i~~dG~I 158 (262)
|+||++..|||+||+||+|+|||+|+++||.++|||+|+|++|+.| +.|.+|+||++ +|.+|+. ..++|..||+|
T Consensus 66 ~spG~l~~TgR~LDvaiq~DGwlaVq~~dG~EaYTRnG~~qI~a~g-~lTiqg~pViG~ggpI~vPp~-~~v~I~~DGtI 143 (251)
T COG4787 66 MSPGSLDYTGRPLDVAIQGDGWLAVQDADGSEAYTRNGNIQIDATG-QLTIQGHPVIGEGGPITVPPG-AKVTIAADGTI 143 (251)
T ss_pred CCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHEECCCEEECCCC-CEECCCCEEECCCCCCCCCCC-CEEEEECCCEE
T ss_conf 7886101368853079736856999868875011115746787654-151279711158985326998-65898038558
Q ss_pred EECCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 52158865--4322211000002662001006886433466665520002467762068607300102349999999999
Q gi|254780378|r 159 LAVTGKNS--DFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMIS 236 (262)
Q Consensus 159 ~~~~~~~~--~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~ 236 (262)
++...... ...++|+|+|+. .+++.+.+-.||||+.+.+..++....+..+...+|.+|+||.||||+++||++||.
T Consensus 144 sa~~~g~~~~~va~vgrlKLV~-~~~~~~~~g~dGLF~l~~e~~q~~~~~~~~d~~vrV~sG~LE~SNVnav~~Mt~mI~ 222 (251)
T COG4787 144 SALNPGDPANTVAVVGRLKLVQ-ATGQEVQRGDDGLFRLTAETQQPRGQVLKADPSVRVMSGALEGSNVNAVEEMTDMIS 222 (251)
T ss_pred EECCCCCCCCCEEECCEEEEEE-CCHHHHHCCCCCEEEECHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 7316899998410103068960-686885148885078235334877664567973465114134565337999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999998715
Q gi|254780378|r 237 AQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 237 ~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
.+|.||+..|||+++|++.+.+++|
T Consensus 223 ~aRqfEmqmKmist~d~na~~anqL 247 (251)
T COG4787 223 LARQFEMQMKMISTADDNAGAANQL 247 (251)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 8888898898875421006889878
No 26
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00 E-value=0 Score=351.28 Aligned_cols=142 Identities=37% Similarity=0.601 Sum_probs=128.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
|||||.+++||.|||-.|||=+||||||||+|||.+++.|.+||+|..++...|...+... ...+++|+||-+.++..
T Consensus 2 lRSLWSGVsgmQAHQvAlDVEgNNIaNVNTtGFKYSRA~F~dMlSQ~~~IATsPy~nGlGG--QNd~~iGLGvsi~sTTk 79 (877)
T TIGR02489 2 LRSLWSGVSGMQAHQVALDVEGNNIANVNTTGFKYSRADFGDMLSQVKKIATSPYDNGLGG--QNDLSIGLGVSIDSTTK 79 (877)
T ss_pred CCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHEEEECCCCCCCCC--CCCCEECCEECCCCCEE
T ss_conf 5101113101102013331044640331345500430431124244000230757877878--77530012100044214
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCE-EEEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 335787332652121232377526531489857-7875212235258834146676104431013
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTV-MYTRAGSFNIDSKGQLVTADGNTLVPGIVIP 144 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~-~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p 144 (262)
.|+||+++.|.+.+||||+|+|||.|....|.. +|||+|.|.+|+.|.||+-.||-|.++.+.|
T Consensus 80 ifsQGs~Q~T~~ktDvAI~GDGFFivS~dgG~Tn~yTRdGaF~fDA~GN~Vnn~GyiVQGW~rP~ 144 (877)
T TIGR02489 80 IFSQGSVQDTNSKTDVAIEGDGFFIVSDDGGLTNAYTRDGAFKFDAAGNLVNNSGYIVQGWVRPD 144 (877)
T ss_pred EEECCCEECCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEECCCCCC
T ss_conf 85348530367751078868355998088884255322773002445540303742787751687
No 27
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=100.00 E-value=0 Score=319.10 Aligned_cols=200 Identities=25% Similarity=0.347 Sum_probs=162.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
.|+||+|+|||.++++++++|||||||+||+|||++...|+++.... + .......+.......
T Consensus 2 dr~iYtA~sg~~~~~~~~~viaNNLANvnT~GFK~~~~~~~~~~~~g------~-----------~~~~~~~~~~~~~~~ 64 (209)
T PRK12643 2 DHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDG------P-----------SLATRTMVTTSTPGV 64 (209)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCCCCC------C-----------CCCCCCEEEECCCCE
T ss_conf 26899999999999998889988877478764431045342312247------7-----------765331133046504
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCE
Q ss_conf 33578733265212123237752653148985778752122352588341466761044---310135653221013312
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP---GIVIPEETREIKVSRSGQ 157 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~---~~~~p~~~~~i~i~~dG~ 157 (262)
||+||++++|||+|||||+|+|||.|++++|+++|||+|+|++|++|+| |.+|++||+ +|.+|+.. .|+|++||+
T Consensus 65 d~~qG~l~~Tg~~LDlAI~G~GfF~V~~~~G~~aYTR~G~f~vd~~G~L-t~~G~~Vlg~~GpI~iP~~~-~i~I~~DGt 142 (209)
T PRK12643 65 DISQGTMNFSGRPLDVALQQDGYLAVQLPDGSEAYTRNGNIQISANGQM-TVQGYPLMGDNGPIDVPPQA-AVTIAADGT 142 (209)
T ss_pred ECCCCCEEECCCCEEEEEECCCEEEEECCCCCEEEEECCCEEECCCCCE-EECCCEEECCCCCEECCCCC-EEEECCCCE
T ss_conf 6167573515983039980895899985899567887887159999879-76985821699885749998-389868977
Q ss_pred EEECCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHH
Q ss_conf 552158865--43222110000026620010068864334666655200024677620686073001
Q gi|254780378|r 158 ILAVTGKNS--DFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEA 222 (262)
Q Consensus 158 I~~~~~~~~--~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~ 222 (262)
|++...... ....|+||+++. ++...|.|..|+||+.++.++.+.-...... ..|++|+||+
T Consensus 143 Vsv~~~g~~~~~~~~vgql~lv~-~~~~~l~k~~dGLF~~t~~~~~a~g~~~p~~--p~v~~g~~e~ 206 (209)
T PRK12643 143 ISALNAGDSPNTIAQLGQIKRVQ-ATAGEMMHGDDGLFHLTPETQQARGAQLPND--PLVKPGEREH 206 (209)
T ss_pred EEEECCCCCCCCCEECCEEEEEC-CCHHHCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCC
T ss_conf 99970899965001403678617-9978850468888783576556668989989--8325651234
No 28
>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=99.80 E-value=2.3e-19 Score=137.21 Aligned_cols=45 Identities=40% Similarity=0.623 Sum_probs=42.7
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 073001023499999999999999999999999999999998715
Q gi|254780378|r 217 QGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 217 qG~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
.||++.||||++.||++||.+||+||+|.++|++.|+|.+++..|
T Consensus 92 ~GyV~~pNVd~~~Emvdm~~A~R~YeAN~~~~~~~k~m~~~~L~i 136 (139)
T PRK05681 92 KGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTI 136 (139)
T ss_pred CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 671542898889999999999999999999999999999999987
No 29
>PRK12632 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.80 E-value=3.6e-19 Score=135.97 Aligned_cols=45 Identities=42% Similarity=0.642 Sum_probs=42.5
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 073001023499999999999999999999999999999998715
Q gi|254780378|r 217 QGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 217 qG~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
.||++.+|||+++||++||+++|+||+|.++|++.++|.+++..|
T Consensus 83 ~GyV~~pnVd~~~EMvdm~~AsRsYeANv~v~~t~k~M~~~~L~i 127 (130)
T PRK12632 83 TGYYDGSNVDLVIEIADAREAQRSYEANLRMFDQARQMSSSLLDL 127 (130)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 677368997889999999999999999999999999999999998
No 30
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=99.77 E-value=2.6e-19 Score=136.86 Aligned_cols=70 Identities=30% Similarity=0.395 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 4899999999999965999775421777340000222999998764025676655566545666311442021123223
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNV 81 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~ 81 (262)
+|+||.|||.++|++|+|++|||||+|||||+|+++.|.+...... ..........++|.||.+.++.+.
T Consensus 7 ~Lnia~SGL~a~Q~~l~vt~~NIANanT~GYsRq~v~~~~~~~~~~---------~g~~~~~~~gq~G~GV~v~~V~R~ 76 (500)
T PRK07739 7 GLETARRGLFAQQAALYVTGHNIANANTPGYTRQRVNLAATPPYPT---------VSRNDPKGPGQMGTGVEAGSIERI 76 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC---------CCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 5999999999999999999775732799980520567643467556---------665566677754367687458883
No 31
>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.76 E-value=7.6e-18 Score=127.93 Aligned_cols=45 Identities=27% Similarity=0.585 Sum_probs=42.9
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 073001023499999999999999999999999999999998715
Q gi|254780378|r 217 QGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 217 qG~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
+||+..+|||++.||++||+++|+||+|..++++.++|..++..|
T Consensus 94 ~GyV~~pnVn~~~EMvdm~~AsRsYEANv~v~~~aK~M~~~aL~I 138 (140)
T PRK12628 94 DGFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQL 138 (140)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 986734898889999999999999999999999999999999861
No 32
>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.76 E-value=1.1e-17 Score=126.91 Aligned_cols=45 Identities=29% Similarity=0.578 Sum_probs=42.4
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 073001023499999999999999999999999999999998715
Q gi|254780378|r 217 QGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 217 qG~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
.||+..+|||++.||++||+++|+||+|..++.+.++|..++..|
T Consensus 97 ~GyV~~PnVd~~~EMvdm~~AsRsYEANv~v~~~aK~m~~~tL~i 141 (143)
T PRK12630 97 EGYVSMPNVNVLNEMADMMASTRSYEANVTAMNAEKSMFSKALEI 141 (143)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988846898889999999999999999999999999999999985
No 33
>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=99.75 E-value=1.6e-17 Score=126.00 Aligned_cols=45 Identities=33% Similarity=0.616 Sum_probs=42.9
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 073001023499999999999999999999999999999998715
Q gi|254780378|r 217 QGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 217 qG~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
.||+..+|||++.||++||+++|+||+|..+|.+.++|..++..|
T Consensus 94 ~GyV~~PnVn~~~EMvdm~~AsRsYeANv~~~~~aK~m~~~aL~I 138 (141)
T PRK06802 94 QGYVFYPDVNVVSEMADMMSASRSFETNVEVLNSVKSMQQSLLKL 138 (141)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988846898989999999999999999999999999999999986
No 34
>TIGR01395 FlgC flagellar basal-body rod protein FlgC; InterPro: IPR006299 These sequences represent FlgC, one of several components of bacterial flagella. FlgC is part of the basal body. ; GO: 0019861 flagellum.
Probab=99.74 E-value=1.5e-17 Score=126.06 Aligned_cols=45 Identities=36% Similarity=0.603 Sum_probs=42.6
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 073001023499999999999999999999999999999998715
Q gi|254780378|r 217 QGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 217 qG~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
-||++..|||+++|||+||+++|+||+|.++|++.++|..++..|
T Consensus 101 ~GYV~~PNVn~~~EMVdmi~A~RsYeANv~v~~~~K~m~~~tL~~ 145 (147)
T TIGR01395 101 EGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMLLRTLEI 145 (147)
T ss_pred CCCEECCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 784705855854323211200247889999999999999999997
No 35
>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.73 E-value=3.3e-17 Score=124.03 Aligned_cols=45 Identities=31% Similarity=0.558 Sum_probs=42.6
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 073001023499999999999999999999999999999998715
Q gi|254780378|r 217 QGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 217 qG~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
.||++.+|||++.||++||+++|+||+|..++.+.++|..++..|
T Consensus 89 ~GyV~~pnVn~~~EMvdm~~AsRsYEANv~~~~~aK~m~~~aL~i 133 (135)
T PRK12629 89 DGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLTM 133 (135)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988846898889999999999999999999999999999999985
No 36
>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=99.73 E-value=2.8e-17 Score=124.49 Aligned_cols=45 Identities=36% Similarity=0.603 Sum_probs=42.3
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 073001023499999999999999999999999999999998715
Q gi|254780378|r 217 QGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 217 qG~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
.||+..+|||++.||++||.++|+||+|..+|++.++|..++..|
T Consensus 91 ~GyV~~pnVn~~~EMvdm~~AsRsYeANv~v~~tak~m~~~tL~i 135 (138)
T PRK12782 91 NGYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVSMTIDL 135 (138)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 788546898889999999999999999999999999999999998
No 37
>PRK12631 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.71 E-value=1.1e-16 Score=120.90 Aligned_cols=45 Identities=40% Similarity=0.663 Sum_probs=42.7
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 073001023499999999999999999999999999999998715
Q gi|254780378|r 217 QGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 217 qG~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
+||+..+|||++.||++||+++|+||+|.+++++.++|..++..|
T Consensus 92 ~GyV~~pNVd~~~EMvdm~~A~RsYeANv~~~~~ak~m~~~aL~I 136 (138)
T PRK12631 92 DGFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLRM 136 (138)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888844898889999999999999999999999999999999974
No 38
>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion]
Probab=99.67 E-value=1.9e-16 Score=119.41 Aligned_cols=46 Identities=37% Similarity=0.611 Sum_probs=43.1
Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6073001023499999999999999999999999999999998715
Q gi|254780378|r 216 KQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 216 ~qG~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
..||++..|||++.||++||+++|+||+|..++++.++|.+++..|
T Consensus 90 ~~GYV~~PNVn~v~EM~dmisAsRsYeANv~v~~~~K~m~~~tL~i 135 (137)
T COG1558 90 AKGYVKMPNVNVVIEMVDMISASRSYEANVEVLNTAKSMMQKTLEL 135 (137)
T ss_pred CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3675565876589999999999998999999999999999999975
No 39
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=99.60 E-value=1.3e-15 Score=114.27 Aligned_cols=66 Identities=32% Similarity=0.457 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
|.-|.||.|||.+.|+.+++++|||||+|||||.|+++.|.+... ....+..+|.||.+.++.+
T Consensus 1 m~~ln~a~SgL~a~q~al~vts~NIANanT~GYsRq~v~~~~~~~----------------~~~~~~~~G~GV~v~~I~R 64 (456)
T PRK07191 1 MNFIRTAFSGMQAAQAHLNATSMNIANMHTPGYSRQGVEQSAIGA----------------DGQGGVNAGNGVNVDGIRR 64 (456)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC----------------CCCCCCCCCCCEEEEEEEE
T ss_conf 975789999999999999999885743899891503667642357----------------7778875567779837887
Q ss_pred CC
Q ss_conf 33
Q gi|254780378|r 81 VY 82 (262)
Q Consensus 81 ~~ 82 (262)
.+
T Consensus 65 ~~ 66 (456)
T PRK07191 65 LS 66 (456)
T ss_pred HH
T ss_conf 05
No 40
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=99.56 E-value=8.1e-15 Score=109.53 Aligned_cols=67 Identities=27% Similarity=0.360 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 04899999999999965999775421777340000222999998764025676655566545666311442021123223
Q gi|254780378|r 2 KAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNV 81 (262)
Q Consensus 2 r~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~ 81 (262)
=+|.||.|||.++|..|+|++|||||++||||.|+.+.+.+... .. ....+..+|.||++.++.+.
T Consensus 4 S~~n~a~SGl~A~q~al~vts~NIANanT~GYsRq~v~~~~~~~-------------~~-~~~~~~~~G~GV~v~~v~R~ 69 (431)
T PRK06799 4 SDYNTPLSGMLAAQMGLQTTQQNLSNIHTPGYVRQMVNYGSVGA-------------SG-GLLPEQRIGYGVQTLGVDRI 69 (431)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC-------------CC-CCCCCCCCCCCEEEEEEEEH
T ss_conf 24569999999999999988785740799890614722013467-------------87-77777755578898068871
Q ss_pred C
Q ss_conf 3
Q gi|254780378|r 82 Y 82 (262)
Q Consensus 82 ~ 82 (262)
+
T Consensus 70 ~ 70 (431)
T PRK06799 70 T 70 (431)
T ss_pred H
T ss_conf 5
No 41
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=99.52 E-value=2.1e-14 Score=106.96 Aligned_cols=41 Identities=32% Similarity=0.504 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 04899999999999965999775421777340000222999
Q gi|254780378|r 2 KAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFAD 42 (262)
Q Consensus 2 r~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~ 42 (262)
-+|+||.+||.+.|..|+|++|||||++||||.|+++.|.+
T Consensus 5 s~lnia~sgL~a~Q~al~vtg~NIANanT~GYsRQ~v~~~~ 45 (482)
T PRK07521 5 SALNTAQSGLTATSRQTSVVSRNIANALTPGYSRRTASLVS 45 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 89999999999999999988563530799882413778774
No 42
>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=99.14 E-value=8.1e-10 Score=79.14 Aligned_cols=41 Identities=39% Similarity=0.523 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-HHHHH
Q ss_conf 899999999999965999775421777340000222-99999
Q gi|254780378|r 4 FMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAE-FADFL 44 (262)
Q Consensus 4 ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~-f~~~~ 44 (262)
|-.+..-|..+..|+.+||+||||++|||||++.+. |++++
T Consensus 7 f~la~~~~~~~~~Rq~viA~NIANadTPgYkarDv~~Fe~~l 48 (126)
T PRK06003 7 FDLASRQAQWLSVRQATVAGNIANANTPGYRARDVEPFADVL 48 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 999999989999999999972202799998612253799998
No 43
>PRK12624 flgB flagellar basal body rod protein FlgB; Provisional
Probab=99.14 E-value=1.4e-10 Score=83.72 Aligned_cols=48 Identities=25% Similarity=0.400 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 048999999999999659997754217773400002229999987640
Q gi|254780378|r 2 KAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEK 49 (262)
Q Consensus 2 r~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~ 49 (262)
+.+.+...+|.+...|.++|||||||++|||||+..+.|++.|.+.+.
T Consensus 9 kT~~lL~kaLd~~~~Rq~vIa~NIAN~dTPgYK~~dv~Fe~~L~~al~ 56 (143)
T PRK12624 9 KTQDLLERGMNNSIQKRKVISDNIANADVPHFKRSEVIFESMIKRAIE 56 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 699999999999999999998601126899976320629999999986
No 44
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=99.08 E-value=8.9e-11 Score=84.96 Aligned_cols=71 Identities=24% Similarity=0.339 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 48999999999999659997754217773400002229999987640256766555665456663114420211232233
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY 82 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~ 82 (262)
+|.|+.+||.+.|..|+|++|||||+|||||-|+++.+++.. |...+..........+|.||.+.++.+.+
T Consensus 7 ~L~ig~sgL~a~Q~aL~ttg~NIANvnT~GYsRQ~v~~~a~~---------p~~~~~~~~~~~~G~~G~GV~v~~I~R~~ 77 (628)
T PRK06665 7 GIEIGKRSLFAHKQAMQTTGHNISNASKPGYSRQRVTMKTED---------PLYAPQLNRANKPGQIGQGVTIQSIERVR 77 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC---------CCCCCCCCCCCCCCCCCCCEEEEEEEEHH
T ss_conf 699999999999999998857664179988052176641236---------64456545455678767888972798715
No 45
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=99.02 E-value=2.4e-10 Score=82.30 Aligned_cols=42 Identities=24% Similarity=0.423 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 010234999999999999999999999999999999987159
Q gi|254780378|r 221 EASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 221 E~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
+.|-||+-+||++||..|++|+|++|+|++.|||++.+++||
T Consensus 570 svSGVnlDEE~~nLik~QqaY~AsArvista~em~dtLL~i~ 611 (612)
T PRK08471 570 SISGVSTDEELTNLIKFQSSYGAAAKIITTVDQMLDTLLGIK 611 (612)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 510603999999999999999999999999999999998244
No 46
>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=99.01 E-value=1.1e-09 Score=78.22 Aligned_cols=46 Identities=35% Similarity=0.499 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4899999999999965999775421777340000222999998764
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAE 48 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~ 48 (262)
.|-+.-.+|.....|+.+||+||||++|||||+..+.|++.|....
T Consensus 8 ~~~~l~~aLd~~~~Rq~via~NIANadTPgYKa~dv~Fe~~L~~a~ 53 (137)
T PRK05680 8 ALGFQQEALNLRAQRQEVIANNIANADTPGYKARDIDFESVLAKAM 53 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999999999999999860202689998866277999999998
No 47
>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.98 E-value=1.9e-09 Score=76.89 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 04899999999999965999775421777340000222999998764
Q gi|254780378|r 2 KAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAE 48 (262)
Q Consensus 2 r~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~ 48 (262)
+.+-+...+|.+...|+++||+||||++|||||++.+.|++.|....
T Consensus 6 ~ti~ll~kaLd~~~~Rq~via~NIANadTPgYK~~dv~Fe~~L~~Al 52 (135)
T PRK12622 6 RSVDLSHRYLDVLSLRQSVIADNIANVDTPNFKRSKVTFESELERAI 52 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 89999999988999999999850102789997524076999999998
No 48
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.95 E-value=8e-10 Score=79.16 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 010234999999999999999999999999999999987159
Q gi|254780378|r 221 EASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 221 E~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
+.|-||+-+||++||..|++|+|++|+|++.|||++.+++||
T Consensus 585 svSGVnlDEEl~nLikyQqaY~AaArvItt~demldtLlnik 626 (626)
T PRK08871 585 SISGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILQLR 626 (626)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 011503999999999999999999999999999999987759
No 49
>PRK12626 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.93 E-value=2.1e-08 Score=70.47 Aligned_cols=46 Identities=30% Similarity=0.511 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8999999999999659997754217773400002229999987640
Q gi|254780378|r 4 FMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEK 49 (262)
Q Consensus 4 ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~ 49 (262)
|-+--.+|....+|+++||+||||++|||||++.+.|++.|...+.
T Consensus 9 ~~~~~~AL~lR~~RqevlAsNIANadTPgYKArDldFe~~L~~al~ 54 (162)
T PRK12626 9 FAFGRQALDVRAYRQELLSSNIANADTPGYRARDVDFASTLARALK 54 (162)
T ss_pred HCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 3610999999999999998500137899986435879999999986
No 50
>PRK12619 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.92 E-value=4.4e-09 Score=74.66 Aligned_cols=46 Identities=33% Similarity=0.491 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4899999999999965999775421777340000222999998764
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAE 48 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~ 48 (262)
.|-+...+|....+|+++||+||||++|||||++.+.|++.+....
T Consensus 8 ~~gi~~~aL~~r~~Rq~via~NIANadTPgYKakdv~Fe~~L~~a~ 53 (130)
T PRK12619 8 YFGIHAKALIARDQRASVLANNIANVNTPNFKARDVDFNEVLTATM 53 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 8667799999999999999862321689998644488999999987
No 51
>PRK12621 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.91 E-value=4.8e-09 Score=74.46 Aligned_cols=45 Identities=31% Similarity=0.406 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 899999999999965999775421777340000222999998764
Q gi|254780378|r 4 FMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAE 48 (262)
Q Consensus 4 ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~ 48 (262)
|-+...+|.+...|+++||+||||++|||||++.+.|++.|....
T Consensus 9 i~ll~~aLd~~~~Rq~via~NIANadTPgYKardv~Fe~~L~~a~ 53 (136)
T PRK12621 9 VNLVGKVMDMQLQRQNVVMSNIANVRTPGYKPRELEFEKQLQSAL 53 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999999999999999971320589998744187899999987
No 52
>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=98.90 E-value=2.3e-09 Score=76.42 Aligned_cols=39 Identities=54% Similarity=0.755 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 023499999999999999999999999999999998715
Q gi|254780378|r 223 SNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 223 SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
||||++.||++||++||+||+++|+|++.|+|+++++++
T Consensus 1 SnV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~~ 39 (39)
T pfam06429 1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL 39 (39)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988789999999999999899999998899999998763
No 53
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=98.90 E-value=1e-09 Score=78.48 Aligned_cols=66 Identities=35% Similarity=0.513 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
|--|.||.|||.++|..|+|++|||||+|||||-|+++.|.+.. |.. .....+|.||.+.++.+
T Consensus 1 msll~ig~sgL~a~Q~al~vt~~NIAN~nT~GYsRq~v~~~~~~---------~~~-------~~~~~~G~Gv~v~~i~R 64 (624)
T PRK12714 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRT---------PTD-------MGYAFVGNGAKITDVGR 64 (624)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC---------CCC-------CCCCCCCCCEEEEEEEE
T ss_conf 97178999999999999998847565168998031277875136---------755-------67864105789737998
Q ss_pred CC
Q ss_conf 33
Q gi|254780378|r 81 VY 82 (262)
Q Consensus 81 ~~ 82 (262)
.+
T Consensus 65 ~~ 66 (624)
T PRK12714 65 VA 66 (624)
T ss_pred HH
T ss_conf 26
No 54
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=98.89 E-value=6.2e-10 Score=79.83 Aligned_cols=67 Identities=36% Similarity=0.500 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
|--|.|+.+||.+.|..|+|++|||||+|||||-|+++.+.+... ....+..+|.||.+.++.+
T Consensus 1 ~sllnig~sgL~a~Q~al~vt~~NIAN~nT~GYsRq~v~~~~~~~----------------~~~~~~~~G~Gv~v~~i~R 64 (649)
T PRK12715 1 MSILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIAS----------------NRYAGSYIGAGVSVSSIYR 64 (649)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC----------------CCCCCCCCCCCEEEEEEEE
T ss_conf 976889999999999999887052552689980414666422467----------------6667873106889757998
Q ss_pred CCC
Q ss_conf 335
Q gi|254780378|r 81 VYT 83 (262)
Q Consensus 81 ~~~ 83 (262)
.+.
T Consensus 65 ~~d 67 (649)
T PRK12715 65 NVD 67 (649)
T ss_pred HHH
T ss_conf 463
No 55
>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion]
Probab=98.88 E-value=4.3e-09 Score=74.75 Aligned_cols=47 Identities=36% Similarity=0.548 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 04899999999999965999775421777340000222999998764
Q gi|254780378|r 2 KAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAE 48 (262)
Q Consensus 2 r~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~ 48 (262)
|.+.....+|.....|.++||+||||++|||||+..+.|++.|....
T Consensus 6 ~~~~l~~~al~~~~~Rq~via~NIANadTP~yKa~dv~Fe~~L~~~~ 52 (133)
T COG1815 6 RAFGLLQKALDVRSLRQEVIANNIANADTPGYKAKDVDFESVLKKAL 52 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999988999999999853102799998744475899999987
No 56
>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.88 E-value=4.7e-09 Score=74.48 Aligned_cols=43 Identities=35% Similarity=0.542 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8999999999999659997754217773400002229999987
Q gi|254780378|r 4 FMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQ 46 (262)
Q Consensus 4 ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~ 46 (262)
+-....+|.....|+.+||+||||++|||||+..+.|++.|..
T Consensus 13 f~ll~~aLd~~~~Rq~vIa~NIANadTPgYKa~dv~Fe~~L~~ 55 (131)
T PRK12623 13 YDLLKKGLDASSYRGKVISNNIANVNTKDYKRHYVTFEETLKD 55 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 9999999999999999998603216899987655869999987
No 57
>PRK12620 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.87 E-value=3.4e-09 Score=75.31 Aligned_cols=45 Identities=24% Similarity=0.476 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 489999999999996599977542177734000022299999876
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQA 47 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~ 47 (262)
.|-+...+|....+|+++||+||||++|||||++.+.|++.|...
T Consensus 8 ~~~~~~~aL~lr~~Rq~viasNIANadTPgYKardv~Fe~~L~~a 52 (132)
T PRK12620 8 FLGVHGDALTLREQRMKLIASNLSNVDTPGYKAKDLNFEAALKSA 52 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 862889999999999999986022168999876658789999998
No 58
>PRK06797 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=98.87 E-value=3.4e-09 Score=75.38 Aligned_cols=39 Identities=33% Similarity=0.439 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999996599977542177734000022299999876
Q gi|254780378|r 9 AGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQA 47 (262)
Q Consensus 9 sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~ 47 (262)
.-|.-...|++|||+||||++|||||++.+.|++.+.+.
T Consensus 10 ~~Ld~r~~Rq~viAsNIANadTPgYKarDv~Fe~~L~~a 48 (135)
T PRK06797 10 HYMNYLVTKRNTVSSNIANANTPGYKAQDVTFAEQMNKS 48 (135)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 998899999999986102478999864338799999998
No 59
>PRK12625 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.85 E-value=9.3e-09 Score=72.70 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 48999999999999659997754217773400002229999987
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQ 46 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~ 46 (262)
.|-+...+|....+|+.+||+||||++|||||++.+.|++.+..
T Consensus 8 ~~~~~~~aL~~~~~Rq~via~NIANadTPgYKa~dl~Fe~~L~~ 51 (132)
T PRK12625 8 ALGVHQYTLGIRAQRAEVISSNIANADTPHYKARDVDFSAAMQA 51 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 86178999999999999998714306899988653889999999
No 60
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.83 E-value=2.6e-09 Score=76.08 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 102349999999999999999999999999999999871
Q gi|254780378|r 222 ASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITK 260 (262)
Q Consensus 222 ~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~ 260 (262)
-|-||+-+||++||..|++|+|++|+|++.|||++.++|
T Consensus 636 vSGVnlDEE~anLikfQqaY~AaArvItt~deMlDtLln 674 (676)
T PRK05683 636 LSGVSLDEEAANLIKFQQYYTASSQIIKAAQETFDTLIN 674 (676)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 625039999999999999999999999999999999973
No 61
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.83 E-value=3.8e-09 Score=75.02 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 01023499999999999999999999999999999998715
Q gi|254780378|r 221 EASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 221 E~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
..|-||+-+||++||..|++|+|++|+|++.|||++.+++|
T Consensus 608 SvSGVnlDEEl~nLikyQqaY~AaArvItt~deMldtLl~i 648 (649)
T PRK06945 608 SVSGVNLDEEAANLLQYQQLYQANAKVIQTASTLFDTLLGI 648 (649)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44061399999999999999999999999999999999953
No 62
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway . The amino acid sequences of the hook protein and of the three hook-associated proteins of Salmonella typhimurium have been deduced from the DNA sequences of their structural genes (flgE, flgK, flgL and fliD respectively). These sequences have been compared with each other and with those for the filament protein (flagellin) and four rod proteins. The hook protein was found to be most similar to the distal rod protein (FlgG) and the proximal hook-associated protein (HAP1), which are thought to be attached to the proximal and distal ends of the hook, the similarities being most pronounced near the N- and C-termini. It is thought that the axial proteins may adopt amphipathic alpha-helical conformations at their N- and C-termini. These regions of the filament and hook are believed to be responsible for quaternary interactions between subunits. Interaction between N- and C-terminal alpha-helices may be important in the formation of the axial structures of the flagellum. Although consensus sequences have been noted, no consensus extends to the entire set of axial proteins. Thus the basis for recognition of a protein for export by the flagellum-specific pathway remains to be identified.; GO: 0005198 structural molecule activity, 0009296 flagellum biogenesis, 0009424 flagellin-based flagellum hook.
Probab=98.80 E-value=2.6e-09 Score=76.05 Aligned_cols=76 Identities=37% Similarity=0.489 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 48999999999999659997754217773400002229999987640256766555665456663114420211232233
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY 82 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~ 82 (262)
.|+||.+||.|.|..|+|+++||||++||||=|+++.+..... ..... .....+..+|.||++.++.+-.
T Consensus 2 ~l~~a~~gL~a~q~al~~~~~NIANant~GY~Rq~a~~~~~~~---------~~~~~-~~~~~~~~~G~GV~v~~i~R~~ 71 (495)
T TIGR02492 2 LLNIAKSGLSASQIALSVTSNNIANANTPGYSRQRAELTASPA---------GGQGL-NATEGGLQIGTGVKVTSIRRIQ 71 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCC---------CCCCC-CCCCCCCCCCCCEEEEEEEEHH
T ss_conf 4789999999999999987436224679896046677503334---------32111-0001466555646986554415
Q ss_pred CCCCCC
Q ss_conf 578733
Q gi|254780378|r 83 TQGEVV 88 (262)
Q Consensus 83 ~qG~l~ 88 (262)
.+--..
T Consensus 72 d~~l~~ 77 (495)
T TIGR02492 72 DQFLDN 77 (495)
T ss_pred HHHHHH
T ss_conf 489999
No 63
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.78 E-value=5.2e-09 Score=74.23 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0010234999999999999999999999999999999987159
Q gi|254780378|r 220 LEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 220 LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
...|-||+-+||++||..||+|+|++|+|++.|||++.+++||
T Consensus 505 ~svSGVnlDEE~~nLi~~Q~aY~AsArvist~demldtLlni~ 547 (547)
T PRK08147 505 QSVSGVNLDEEYGNLQRFQQYYLANAQVLQTASTLFDALLNIR 547 (547)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8431766999999999999999999999999999999987759
No 64
>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=98.76 E-value=1.2e-08 Score=71.93 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 023499999999999999999999999999999998715
Q gi|254780378|r 223 SNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 223 SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
-|||+-.||++|.+.+..||+...+++..=.++..++.=
T Consensus 87 N~Vdle~Em~~~aen~~~Y~~~~~~~~~~~~~l~~AIg~ 125 (126)
T PRK06004 87 NAVNLEDEMLKVSDNQMDYAAATSLYQKSLGLLKTAIGK 125 (126)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 814699999999999999999999999999999999756
No 65
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.75 E-value=1.6e-08 Score=71.26 Aligned_cols=64 Identities=34% Similarity=0.531 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 48999999999999659997754217773400002229999987640256766555665456663114420211232233
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY 82 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~ 82 (262)
.|-||.+||.+.|..+++++|||||++||||-|+++.+.+. .+ .......+|.||++.++.+.+
T Consensus 4 ~l~ia~sgL~a~Q~al~vt~~NIaNanT~GYsRq~v~~~~~---------~~-------~~~~~g~~G~GV~v~~I~R~~ 67 (547)
T PRK08147 4 LINTAMSGLNAAQAALNTVSNNISNYNVAGYTRQTTILAQA---------GS-------TLTAGGWIGNGVYVSGVQREY 67 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC---------CC-------CCCCCCCCCCCEEEEEEEECH
T ss_conf 89999999999999999997756338999806305775224---------66-------556787425787980698815
No 66
>PRK12685 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=98.74 E-value=2.4e-08 Score=70.22 Aligned_cols=43 Identities=23% Similarity=0.405 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 4899999999999965999775421777340000222999998
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLY 45 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~ 45 (262)
.|-+.-.+|.....|+.+||+||||++|||||+..+.|++.+.
T Consensus 8 ~~~~~~~aLd~~~~Rq~via~NIANadTPgYKakdl~F~~~l~ 50 (116)
T PRK12685 8 ALGVHPQTLDFRVERSKVLASNLANAETPGYKARDLDFKAVMS 50 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 8657899999999999999860331689998766588999999
No 67
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.73 E-value=1.9e-08 Score=70.74 Aligned_cols=65 Identities=26% Similarity=0.423 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 48999999999999659997754217773400002229999987640256766555665456663114420211232233
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY 82 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~ 82 (262)
-|+||.+|+.+.|..|+|++|||||+|||||.|+++.+.+- .| ....+..+|.||.+.++.+.+
T Consensus 5 ll~ig~sgL~a~Q~al~vtg~NIANanT~GYsRq~v~~~~~---------~~-------~~~~~~~~G~GV~v~~I~R~~ 68 (626)
T PRK08871 5 LLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTN---------DP-------RQFGGSTYGMGVHVENVRRSW 68 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC---------CC-------CCCCCCCCCCCEEEEEEEECH
T ss_conf 89999999999999999874766516998805105654045---------76-------234787203678983799815
Q ss_pred C
Q ss_conf 5
Q gi|254780378|r 83 T 83 (262)
Q Consensus 83 ~ 83 (262)
.
T Consensus 69 D 69 (626)
T PRK08871 69 D 69 (626)
T ss_pred H
T ss_conf 2
No 68
>PRK07182 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=98.71 E-value=3.8e-08 Score=68.96 Aligned_cols=46 Identities=26% Similarity=0.431 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4899999999999965999775421777340000222999998764
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAE 48 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~ 48 (262)
.|-+--.+|....+|+++||+||||++|||||++.+.|++.|.+..
T Consensus 8 ~lg~~~~aL~lR~~RqevlAsNIANaDTPgYKArDidF~~~L~~A~ 53 (148)
T PRK07182 8 ALGVHPMAMQLRLTRAELLSANLANVNTPNFQAKDIDFAAEMQRAK 53 (148)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 7370599999999999999861221689998663788899999987
No 69
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.69 E-value=3e-08 Score=69.61 Aligned_cols=64 Identities=22% Similarity=0.328 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 48999999999999659997754217773400002229999987640256766555665456663114420211232233
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY 82 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~ 82 (262)
+|.||.|||.+.|+.|++++|||||+|||||.|+++.+.+... .......+|.||.+.++.+.+
T Consensus 7 ~Lnia~sGL~a~Q~aL~vtg~NIANanT~GYsRQ~v~~~~~~~----------------~~~~~g~~G~GV~v~~I~R~~ 70 (612)
T PRK08471 7 SLNTGYTGLQAHQVQVSVTGNNISNASSEFYTRQRVVQTAQTA----------------LNTGPGNVGTGTQIETIVRIH 70 (612)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC----------------CCCCCCCCCCCEEEEEEEECH
T ss_conf 8999999999999999998676740789981501677404466----------------125788655677976698703
No 70
>pfam00460 Flg_bb_rod Flagella basal body rod protein.
Probab=98.65 E-value=1.3e-08 Score=71.78 Aligned_cols=31 Identities=58% Similarity=0.812 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8999999999999659997754217773400
Q gi|254780378|r 4 FMIAAAGMSAQQTNLEIIANNIANINTTGYK 34 (262)
Q Consensus 4 ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK 34 (262)
||++.|+|.+++.++++|||||||++|+|||
T Consensus 1 l~~a~sal~a~~~~l~vianNiAN~nT~G~k 31 (31)
T pfam00460 1 LYTAVSALNAQQIALDVIANNIANANTTGYK 31 (31)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9138876508999999998610245576789
No 71
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway . The amino acid sequences of the hook protein and of the three hook-associated proteins of Salmonella typhimurium have been deduced from the DNA sequences of their structural genes (flgE, flgK, flgL and fliD respectively). These sequences have been compared with each other and with those for the filament protein (flagellin) and four rod proteins. The hook protein was found to be most similar to the distal rod protein (FlgG) and the proximal hook-associated protein (HAP1), which are thought to be attached to the proximal and distal ends of the hook, the similarities being most pronounced near the N- and C-termini. It is thought that the axial proteins may adopt amphipathic alpha-helical conformations at their N- and C-termini. These regions of the filament and hook are believed to be responsible for quaternary interactions between subunits. Interaction between N- and C-terminal alpha-helices may be important in the formation of the axial structures of the flagellum. Although consensus sequences have been noted, no consensus extends to the entire set of axial proteins. Thus the basis for recognition of a protein for export by the flagellum-specific pathway remains to be identified.; GO: 0005198 structural molecule activity, 0009296 flagellum biogenesis, 0009424 flagellin-based flagellum hook.
Probab=98.62 E-value=6.1e-08 Score=67.71 Aligned_cols=48 Identities=27% Similarity=0.437 Sum_probs=43.2
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 686073001023499999999999999999999999999999998715
Q gi|254780378|r 214 HVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 214 ~v~qG~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
++.+-....|-||+-+||++||..||+|+||+|||++.|+|++.+.++
T Consensus 448 ~~~~~~~s~sGVs~DEE~~~l~~~Q~~Y~A~ak~i~t~d~m~d~LL~~ 495 (495)
T TIGR02492 448 QLQEARSSISGVSLDEEMANLIQYQKAYQASAKVISTVDEMLDSLLNL 495 (495)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999988764166799999999999988999999999999999999639
No 72
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=98.62 E-value=2.9e-08 Score=69.64 Aligned_cols=64 Identities=30% Similarity=0.551 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 04899999999999965999775421777340000222999998764025676655566545666311442021123223
Q gi|254780378|r 2 KAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNV 81 (262)
Q Consensus 2 r~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~ 81 (262)
-+|.||.+||.+++..++|++|||||++||||-|+++.+.+.. +....+...|.||.+.++.+.
T Consensus 5 s~lnta~sgl~a~q~~l~vtg~NIsNant~gYsRQrv~~~~~~----------------~~~~~~~~~G~Gv~V~sI~R~ 68 (552)
T COG1256 5 SLLNTALSGLNAAQAALDVTGHNISNANTPGYSRQRVIQTTNI----------------PYLGGGLNVGTGVNVVSIQRL 68 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHCCC----------------CCCCCCCCCCCCEEEEEEEEH
T ss_conf 7799999999999999987561335689998630210432356----------------643576666676488863116
No 73
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.58 E-value=9.3e-08 Score=66.60 Aligned_cols=64 Identities=33% Similarity=0.460 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 89999999999996599977542177734000022299999876402567665556654566631144202112322335
Q gi|254780378|r 4 FMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVYT 83 (262)
Q Consensus 4 ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~~ 83 (262)
|.||.+||.++|..|+|++|||||+||+||-|+++.+.+. .+ .......+|.||.+.++.+.+.
T Consensus 5 l~ig~sgL~a~Q~~l~vtg~NIaN~nT~GYsRq~v~~~~~---------~~-------~~~~~g~~G~Gv~v~~I~R~~D 68 (649)
T PRK06945 5 FNIGVSGLNAAQWGLTTTGHNISNAATPGYSRQRPVQAEA---------SG-------QYTGSGYLGQGVNTVTVKRQYN 68 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC---------CC-------CCCCCCCCCCCEEEEEEEEHHH
T ss_conf 8999999999999999885756517898804016663045---------77-------4557875457779836998042
No 74
>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.58 E-value=1.6e-07 Score=65.19 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10234999999999999999999999999999999987
Q gi|254780378|r 222 ASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLIT 259 (262)
Q Consensus 222 ~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~ 259 (262)
+-+||+-+||+++-+.+..||+...+++..=.|+..++
T Consensus 88 GN~V~le~Em~~~aen~~~Y~~~~~~~~~~~~~lrtAi 125 (128)
T PRK12627 88 GNSVSLEEEMLRSAEAKRQHDRALAIYKSSMSLLRTSL 125 (128)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88355999999999999999999999999999999986
No 75
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.50 E-value=2.2e-07 Score=64.31 Aligned_cols=64 Identities=34% Similarity=0.517 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 48999999999999659997754217773400002229999987640256766555665456663114420211232233
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY 82 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~ 82 (262)
-|.+|.+||.+.|..|+|++|||||+|||||.|+++.+++.. + .......+|.||.+.++.+.+
T Consensus 3 ll~ig~sgL~a~q~al~vt~~NIaN~nT~GYsRq~v~~~~~~---------~-------~~~~~~~~G~Gv~v~~i~R~~ 66 (676)
T PRK05683 3 LISIGLSGLGASQTALATTGNNIANVDTAGYSRQQAVQTTKA---------S-------QFSGAGYIGTGTTLADVRRIY 66 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC---------C-------CCCCCCCEECCEEEEEEEEHH
T ss_conf 789999999999999998736664179988140166631346---------7-------556785031588973598816
No 76
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=98.48 E-value=2.5e-07 Score=63.96 Aligned_cols=43 Identities=28% Similarity=0.343 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3001023499999999999999999999999999999998715
Q gi|254780378|r 219 YLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 219 ~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
...-|-||+-+||++||..|++|+|++|+|++.|||++.++++
T Consensus 580 r~SvSGVnlDEE~anLikfQqaY~AaArvIttadem~dtLL~~ 622 (624)
T PRK12714 580 RDSISGVNLDEEAADMLKLQQAYQAAAQMISTADTMFQAILGA 622 (624)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8703061689999999999999999999999999999999985
No 77
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.47 E-value=2.8e-07 Score=63.69 Aligned_cols=40 Identities=28% Similarity=0.464 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0102349999999999999999999999999999999871
Q gi|254780378|r 221 EASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITK 260 (262)
Q Consensus 221 E~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~ 260 (262)
..|-||+-+||++||..|++|+|++|+|++.|||++.+++
T Consensus 585 svSGVnlDEE~anLikfQqaY~AsArvIst~dem~dtLln 624 (628)
T PRK06665 585 SVSGVNKDEELANMIEFQQSYNASAKFINVSNELLDTIIN 624 (628)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7636029999999999999999999999999999999987
No 78
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=98.47 E-value=2.7e-07 Score=63.78 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 1023499999999999999999999999999999998715
Q gi|254780378|r 222 ASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 222 ~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
.|-||+-+||++||..|++|+|++|+|+++|+|++.+.++
T Consensus 608 vSGVNLDEE~aNLi~fQqaY~AsArvIsta~emfDtLLn~ 647 (649)
T PRK12715 608 KSGVNLDEEGANLLVFQQAYQAAGKLMEISNQIMNLLFDI 647 (649)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3151688999999999999999999999999999999985
No 79
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=98.33 E-value=9.2e-07 Score=60.56 Aligned_cols=48 Identities=27% Similarity=0.406 Sum_probs=41.8
Q ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 860730010234999999999999999999999999999999987159
Q gi|254780378|r 215 VKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 215 v~qG~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
+..-..+.|-||+-+||++||+.|++|+|++|+|++.|+|+..+++++
T Consensus 504 ~~~~~~S~SGVnlDEE~anLi~~Qq~Y~AsAKvI~tvd~m~dtLln~~ 551 (552)
T COG1256 504 LTSERQSISGVNLDEEMANLIQFQQAYQASAKVIQTVDEMLDTLLNIV 551 (552)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999986013778779999999999999999999999999999998642
No 80
>TIGR01396 FlgB flagellar basal-body rod protein FlgB; InterPro: IPR006300 Many bacterial species swim actively by means of flagella. The flagella organelle is made of three parts: the basal body, the hook and the filament. The basal body consists of four rings (L,P,S, and M) mounted on a central rod . In Salmonella typhimurium and related organisms the rod has been shown to consist of four different, yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB, flgC, and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. These sequences represent FlgB, one of several components of bacterial flagella. FlgB is part of the basal body.; GO: 0019861 flagellum.
Probab=96.66 E-value=0.002 Score=40.31 Aligned_cols=45 Identities=33% Similarity=0.454 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 489999999999996599977542177734000022299999876
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQA 47 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~ 47 (262)
.+.....++.....+.+++++|+||++|||||+....|++.+...
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~~~l~~~ 48 (134)
T TIGR01396 4 ALGLLQKALDLRSLRQEVLANNIANADTPGYKAKDLSFEAELKKA 48 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHH
T ss_conf 044677776577776666654310035665310110278888887
No 81
>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional
Probab=93.95 E-value=0.15 Score=28.88 Aligned_cols=42 Identities=31% Similarity=0.461 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHH
Q ss_conf 89999999999996599977542177734000022-2999998
Q gi|254780378|r 4 FMIAAAGMSAQQTNLEIIANNIANINTTGYKRARA-EFADFLY 45 (262)
Q Consensus 4 ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~-~f~~~~~ 45 (262)
|-.+..-|.-+..|+.|||+||||++|||||++.+ .|++.+.
T Consensus 8 f~l~~~~~~~la~Rq~ViA~NIANADTPgYkarDl~~F~~~l~ 50 (128)
T PRK12627 8 FRMASAMARHAGERQAVIAQNVANADTPGYRARDLADFAETYA 50 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHH
T ss_conf 9999999999999999999741037999985000041999998
No 82
>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion]
Probab=93.26 E-value=0.23 Score=27.69 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0010234999999999999999999999999999999987
Q gi|254780378|r 220 LEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLIT 259 (262)
Q Consensus 220 LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~ 259 (262)
.-+=|||+-.||+++.+.++.||++..++...-.|+..++
T Consensus 91 ~dGNtVdld~E~~~~~kN~~~Yq~~~~~l~~~~~~~~~vl 130 (133)
T COG1815 91 NDGNTVDLDREMTEFAKNQLMYQALLSFLKSQIKMLNSVL 130 (133)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8887043899999999999999999999999999999997
No 83
>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=92.83 E-value=0.32 Score=26.86 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH---HHHHHHHHH
Q ss_conf 9999999996599977542177734000022---299999876
Q gi|254780378|r 8 AAGMSAQQTNLEIIANNIANINTTGYKRARA---EFADFLYQA 47 (262)
Q Consensus 8 ~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~---~f~~~~~~~ 47 (262)
...|.....|++|||+||||++|||||++.+ .|++.+...
T Consensus 3 ~~~m~~~~~Rq~via~NIANadTPgYkarDl~~~~F~~~l~~~ 45 (126)
T PRK06004 3 RTRMQWHQERQKVLAENVANSDTPGFRPRDLVEPKFDATGQLA 45 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 8888799999999997244068999883236525199999998
No 84
>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=92.20 E-value=0.4 Score=26.28 Aligned_cols=41 Identities=12% Similarity=0.061 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00102349999999999999999999999999999999871
Q gi|254780378|r 220 LEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITK 260 (262)
Q Consensus 220 LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~ 260 (262)
.-+-|||+-+||++|.+.+-.||+...++...=.++..+++
T Consensus 94 ~DGN~Vdle~Em~~~a~N~l~Y~a~~~~l~~~~~~l~~aI~ 134 (137)
T PRK05680 94 NDGNTVDMDVERTEFAKNSLMYQALLTALNGKFKGLMSVLQ 134 (137)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89986087999999999999999999999999999999986
No 85
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase; InterPro: IPR010141 This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis, which represent a second clade of the enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP..
Probab=79.03 E-value=3.2 Score=20.76 Aligned_cols=80 Identities=23% Similarity=0.382 Sum_probs=48.9
Q ss_pred CCCCCEEEEEEC-CCCEEEEEC-------CCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 326521212323-775265314-------898577875212235258834146676104431013565322101331255
Q gi|254780378|r 88 VHTGNNLDLALV-GRGWFQVET-------PDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQIL 159 (262)
Q Consensus 88 ~~Tg~~lD~Ai~-G~Gff~V~~-------~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~ 159 (262)
.+-|--.+++|+ |+|=|.+.+ .+|+++ -|-|+-+|.+=+ ++.+.++|+++
T Consensus 1176 ~~vGdih~ipvSHGEGrFva~~~~l~~L~~NGQIa------------tQYVD~~G~~~m----------~~~yNPNGS~~ 1233 (1279)
T TIGR01857 1176 VSVGDIHAIPVSHGEGRFVASDEVLKELRENGQIA------------TQYVDFEGKPAM----------DLKYNPNGSSL 1233 (1279)
T ss_pred EEECCEEEEEEECCCCCEECCHHHHHHHHHCCCEE------------EEEECCCCCCCC----------CCCCCCCCCCE
T ss_conf 03242775334448983230778998986379637------------898726786357----------88669785302
Q ss_pred ECCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 215886-54322211000002662001006886433466
Q gi|254780378|r 160 AVTGKN-SDFQPVGQLLIANFINEAGLRNIGDNLLARTS 197 (262)
Q Consensus 160 ~~~~~~-~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~ 197 (262)
+.-|-- .+++.+|+.+=. +|.+++||.--+
T Consensus 1234 AIEGI~S~dG~i~GKMGHS--------ER~~~~lf~Nip 1264 (1279)
T TIGR01857 1234 AIEGIISPDGRIFGKMGHS--------ERYGDGLFKNIP 1264 (1279)
T ss_pred EECCEECCCCEEEEECCCE--------EECCCCCEECCC
T ss_conf 4634456897275204520--------244788546078
No 86
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=75.66 E-value=5.9 Score=19.16 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 010234999999999999999999999999999999987
Q gi|254780378|r 221 EASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLIT 259 (262)
Q Consensus 221 E~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~ 259 (262)
.--.||+.+||++|...|-.+|+..+++....++-....
T Consensus 318 ~i~D~D~aee~t~l~~~q~~~Qas~~~laqan~~s~~~l 356 (360)
T COG1344 318 RIVDVDMAEESTELTKLQILQQASLQALAQANQLSLLVL 356 (360)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 400776999999999999999999999999986028889
No 87
>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional
Probab=58.71 E-value=13 Score=17.04 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 349999999999999999999999999
Q gi|254780378|r 225 VDAVKEISEMISAQRAYEMNSKVIEAA 251 (262)
Q Consensus 225 Vd~~~Emv~lI~~qR~ye~n~k~i~t~ 251 (262)
+|+++||++|-..|-.||+.++++...
T Consensus 488 ~D~Ae~~t~lt~~qil~qAa~s~~aqi 514 (523)
T PRK12717 488 SDPAEATTRLTLQQTMLEASQQAFVKI 514 (523)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 039999999999999999999999998
No 88
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=57.87 E-value=13 Score=16.98 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=5.7
Q ss_pred CCCCCCCCEEEECCC
Q ss_conf 221013312552158
Q gi|254780378|r 149 EIKVSRSGQILAVTG 163 (262)
Q Consensus 149 ~i~i~~dG~I~~~~~ 163 (262)
.+.+++||.++..++
T Consensus 150 Ri~F~pDG~Ly~stG 164 (454)
T TIGR03606 150 RLVFGPDGKIYYTIG 164 (454)
T ss_pred EEEECCCCCEEEEEC
T ss_conf 277878997899965
No 89
>PRK12804 flagellin; Provisional
Probab=57.15 E-value=14 Score=16.88 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 023499999999999999999999999999999998715
Q gi|254780378|r 223 SNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 223 SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
--||+++|+++|-..|=.||+...|+..+.++-+.+.+|
T Consensus 267 ~DaD~A~e~~~l~~~qi~~Qaa~a~laqAN~~~q~~L~L 305 (307)
T PRK12804 267 RDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQL 305 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 600699999999999999999999999982668999985
No 90
>pfam12396 DUF3659 Protein of unknown function (DUF3659). This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=55.56 E-value=7.7 Score=18.45 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=34.0
Q ss_pred EEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEE
Q ss_conf 23525883414667610443-1013565322101331255215886543222110000
Q gi|254780378|r 121 FNIDSKGQLVTADGNTLVPG-IVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIA 177 (262)
Q Consensus 121 f~~d~~G~Lvt~~G~~vl~~-~~~p~~~~~i~i~~dG~I~~~~~~~~~~~~i~~i~l~ 177 (262)
++++.+|.+++.+|.+|--- -.-|.....-.|+++|.|.. ..+..+|+..+.
T Consensus 7 l~V~k~G~V~d~~G~~vGrvveGd~~~L~G~~vd~~G~I~d-----~~G~viGrae~~ 59 (64)
T pfam12396 7 LTVNKDGNVVDKDGNVVGRVVEGDPKKLAGRKVDEDGDILD-----KDGNVIGRAELI 59 (64)
T ss_pred CEECCCCEEECCCCCEEEEEECCCHHHCCCCCCCCCCCEEC-----CCCCEEEEEEEC
T ss_conf 88788860989999898898148989905975999997988-----999997888767
No 91
>pfam04525 DUF567 Protein of unknown function (DUF567). Family of uncharacterized proteins. This family contains both plant and bacterial members.
Probab=51.72 E-value=17 Score=16.41 Aligned_cols=43 Identities=19% Similarity=0.401 Sum_probs=31.3
Q ss_pred EEECCCCEEEEECCCCCEEEEEEEEE-EECCCCCCCCCCCCCCCC
Q ss_conf 23237752653148985778752122-352588341466761044
Q gi|254780378|r 96 LALVGRGWFQVETPDKTVMYTRAGSF-NIDSKGQLVTADGNTLVP 139 (262)
Q Consensus 96 ~Ai~G~Gff~V~~~~G~~~yTR~G~f-~~d~~G~Lvt~~G~~vl~ 139 (262)
+-++|+||= |-+.+|++.|-=+|-. ....+-+|.+..|.+||.
T Consensus 23 l~~~g~gft-V~D~~G~lvfRVD~y~~~~~~~~~LmD~~G~~Llt 66 (187)
T pfam04525 23 LVFNGDGFT-VYDSKGNLVFRVDGYAFSLSDERVLMDSSGKPLLT 66 (187)
T ss_pred EEECCCCEE-EEECCCCEEEEEECCCCCCCCEEEEECCCCCEEEE
T ss_conf 787299809-99199999999948676678869999799999899
No 92
>TIGR02034 CysN sulfate adenylyltransferase, large subunit; InterPro: IPR011779 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulphation of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS) . In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids . Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules . With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulphurase) and cysC (APS kinase) , .; GO: 0016772 transferase activity transferring phosphorus-containing groups.
Probab=48.16 E-value=8.6 Score=18.16 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=9.2
Q ss_pred EEEEECCCCCEEEEEEE
Q ss_conf 26531489857787521
Q gi|254780378|r 103 WFQVETPDKTVMYTRAG 119 (262)
Q Consensus 103 ff~V~~~~G~~~yTR~G 119 (262)
|. |.+..|.+-||||=
T Consensus 82 FI-vADTPGHEQYTRNM 97 (411)
T TIGR02034 82 FI-VADTPGHEQYTRNM 97 (411)
T ss_pred EE-EECCCCCCCCCCCC
T ss_conf 78-84085594154430
No 93
>PRK12802 flagellin; Provisional
Probab=48.11 E-value=20 Score=15.99 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 1023499999999999999999999999999999998715
Q gi|254780378|r 222 ASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 222 ~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
--.||+++|+++|-..|=.||+...++..+.++-+.+.+|
T Consensus 241 i~DaD~A~e~~~l~~~qi~~Qaa~a~laqANq~~q~vl~L 280 (282)
T PRK12802 241 VQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKL 280 (282)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6600599999999999999999999999996768999985
No 94
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=47.94 E-value=6.8 Score=18.81 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=28.2
Q ss_pred EECCCCEEEEECCCCCE--EEEEEEEEEECCCCCCCCCCCCCC--CCC--CCCCCCCCCCCCCCCCE
Q ss_conf 32377526531489857--787521223525883414667610--443--10135653221013312
Q gi|254780378|r 97 ALVGRGWFQVETPDKTV--MYTRAGSFNIDSKGQLVTADGNTL--VPG--IVIPEETREIKVSRSGQ 157 (262)
Q Consensus 97 Ai~G~Gff~V~~~~G~~--~yTR~G~f~~d~~G~Lvt~~G~~v--l~~--~~~p~~~~~i~i~~dG~ 157 (262)
.|.+++.|++++|.|-. .|-|. .+++.+.++--.+ ++. +.--.+++-+.|+++|.
T Consensus 172 il~~~~l~a~RDp~GiRPL~lGk~------~~~~vvASEs~Al~~lg~~~irdv~PGEiv~I~~~g~ 232 (471)
T PRK06781 172 LLTGNEMIVALDPNGFRPLSIGKM------GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGI 232 (471)
T ss_pred EEECCEEEEEECCCCCCCEEEEEE------CCEEEEEECCHHHHCCCCEEEEECCCCEEEEEECCCE
T ss_conf 998997999989887751499970------9989999651354223976998169965999948957
No 95
>PRK12805 flagellin; Provisional
Probab=47.26 E-value=20 Score=15.91 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 023499999999999999999999999999999998715
Q gi|254780378|r 223 SNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 223 SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
-.||+++|+++|...|=.+|+...|+..+.++-+.+.+|
T Consensus 246 ~DaD~A~e~~~l~k~qil~Qaa~amlaQAN~~pq~vL~L 284 (287)
T PRK12805 246 EDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQL 284 (287)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 722199999999999999999999999983277999987
No 96
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.65 E-value=21 Score=15.85 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=33.1
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCC
Q ss_conf 3326521212323775265314898577875212235258834
Q gi|254780378|r 87 VVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQL 129 (262)
Q Consensus 87 l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~L 129 (262)
-..|.+.+-|-++|+|-|.+- +|+..+-+.|+|-+.+.+.-
T Consensus 108 HrHsqsAlRFvveG~Ga~T~V--dGer~~M~~GDfilTP~w~w 148 (351)
T COG3435 108 HRHNQSALRFVVEGKGAYTVV--DGERTPMEAGDFILTPAWTW 148 (351)
T ss_pred CCCCCCCEEEEEECCCEEEEE--CCCEEECCCCCEEECCCCEE
T ss_conf 555601058999434105864--58031013798897168344
No 97
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=46.51 E-value=4.8 Score=19.69 Aligned_cols=58 Identities=10% Similarity=0.136 Sum_probs=27.7
Q ss_pred EECCCCEEEEECCCCCE--EEEE--EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 32377526531489857--7875--2122352588341466761044310135653221013312
Q gi|254780378|r 97 ALVGRGWFQVETPDKTV--MYTR--AGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQ 157 (262)
Q Consensus 97 Ai~G~Gff~V~~~~G~~--~yTR--~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~ 157 (262)
.+.+++.|++++|.|-. .|-+ +|.+-+.+|---...-|... +.--.+++-+.|+++|.
T Consensus 173 il~~~~l~a~RDp~GiRPL~~Gk~~~g~yvvASEs~Al~~ig~~~---irdv~PGEiv~i~~~g~ 234 (484)
T PRK07272 173 LLTEDKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEF---VRDVQPGEVVVIDDDGI 234 (484)
T ss_pred EEECCEEEEEECCCCCCCEEEEEECCCEEEEEECHHHHHCCCCEE---EEECCCCEEEEEECCCE
T ss_conf 985992999989988764289995797299996625642469769---98438976999957965
No 98
>PRK06819 flagellin; Validated
Probab=45.82 E-value=21 Score=15.78 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23499999999999999999999999999999998715
Q gi|254780378|r 224 NVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 224 NVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
.+|.++||++|-..|=..|+...|+..+.++-+.+.+|
T Consensus 332 DaD~A~E~t~l~k~qil~Qa~~amLaqANq~~q~vL~L 369 (371)
T PRK06819 332 DADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSL 369 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 30399999999999999999999999977077899985
No 99
>PRK08869 flagellin; Reviewed
Probab=45.09 E-value=22 Score=15.71 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 023499999999999999999999999999999998715
Q gi|254780378|r 223 SNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 223 SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
-.||.++||++|-..|=..|+.+.|+..+.+.-+.+.+|
T Consensus 337 ~DaD~A~E~t~l~k~qil~Qa~~amLaqANq~~q~vL~L 375 (377)
T PRK08869 337 KDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSL 375 (377)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 513199999999999999999999999973176799984
No 100
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=43.55 E-value=21 Score=15.76 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=8.8
Q ss_pred CCCCCEEEEEEC
Q ss_conf 326521212323
Q gi|254780378|r 88 VHTGNNLDLALV 99 (262)
Q Consensus 88 ~~Tg~~lD~Ai~ 99 (262)
+.-|+++|+.|+
T Consensus 31 ~~~~~~~df~i~ 42 (290)
T PRK10572 31 IEAGGYLDFFID 42 (290)
T ss_pred ECCCCCCEEEEE
T ss_conf 225971303451
No 101
>PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=43.42 E-value=23 Score=15.55 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2349999999999999999999999999999
Q gi|254780378|r 224 NVDAVKEISEMISAQRAYEMNSKVIEAADEM 254 (262)
Q Consensus 224 NVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem 254 (262)
.+|+++|+++|-..|-.||+..+++...-+|
T Consensus 367 DaD~ae~~t~l~~~q~~~qAa~~~~aqi~q~ 397 (403)
T PRK08870 367 DLDYASAISEFEKQQAALQAAQQAFSKVQSL 397 (403)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5479999999999999999999999988345
No 102
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily; InterPro: IPR004799 Periplasmic protein thiol:disulphide oxidoreductase is involved in the biogenesis of c-type cytochromes as well as in disulphide bond formation in some periplasmic proteins. This group defines the DsbE subfamily.; GO: 0015036 disulfide oxidoreductase activity, 0017004 cytochrome complex assembly, 0030288 outer membrane-bounded periplasmic space.
Probab=42.27 E-value=24 Score=15.44 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=15.2
Q ss_pred CCCCCC---CCCCCCCCEEEEEE-CCCCEEEE
Q ss_conf 223357---87332652121232-37752653
Q gi|254780378|r 79 RNVYTQ---GEVVHTGNNLDLAL-VGRGWFQV 106 (262)
Q Consensus 79 ~~~~~q---G~l~~Tg~~lD~Ai-~G~Gff~V 106 (262)
|.|-+| +=|+.-|||+.+-+ +++|-+.+
T Consensus 102 YKD~~~~Al~~LkelGNPy~~~~~D~~G~~gl 133 (175)
T TIGR00385 102 YKDQSQNALKFLKELGNPYQLILADPKGKLGL 133 (175)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEEECCCCCEEE
T ss_conf 47884578888764489066888789984653
No 103
>KOG2096 consensus
Probab=42.01 E-value=22 Score=15.71 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=33.8
Q ss_pred CCEEEEEECCCCEEEEE---CCC---CCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 52121232377526531---489---8577875212235258834146676104431013565322101331255
Q gi|254780378|r 91 GNNLDLALVGRGWFQVE---TPD---KTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQIL 159 (262)
Q Consensus 91 g~~lD~Ai~G~Gff~V~---~~~---G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~ 159 (262)
-+.+|-|++-+|-|... +|| =|+-|||+|.|+--.--+-.-+.--.|+..---|....-++++.||.+.
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr 303 (420)
T KOG2096 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR 303 (420)
T ss_pred CCCCCEEECCCCCEEEEECCCCCCEEEEEEECCCCCHHHHHHHHEECCCHHHEEEEEECCCCCEEEEEECCCCEE
T ss_conf 346431357998479873278873689877656760653231320146245402232179861458970488279
No 104
>pfam00700 Flagellin_C Bacterial flagellin C-terminal helical region. Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.
Probab=40.75 E-value=26 Score=15.30 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02349999999999999999999999999999
Q gi|254780378|r 223 SNVDAVKEISEMISAQRAYEMNSKVIEAADEM 254 (262)
Q Consensus 223 SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem 254 (262)
-.||+++|+++|...|=.+|+...++.-..++
T Consensus 47 ~D~D~Aee~t~l~~~qil~qas~a~~aqanql 78 (84)
T pfam00700 47 EDVDPAEASTRVTKLQILLQASYALTAQANQL 78 (84)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66509999999999999999999999998678
No 105
>PRK08412 flgL flagellar hook-associated protein FlgL; Validated
Probab=38.81 E-value=27 Score=15.11 Aligned_cols=28 Identities=11% Similarity=0.338 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2349999999999999999999999999999
Q gi|254780378|r 224 NVDAVKEISEMISAQRAYEMNSKVIEAADEM 254 (262)
Q Consensus 224 NVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem 254 (262)
..|+++||.+++..|-+||| |+++.-++
T Consensus 741 D~D~AE~mm~ft~l~~~yQA---mLas~~kI 768 (777)
T PRK08412 741 GTDMAETYNKFSNLTNNYNA---VLASTNKI 768 (777)
T ss_pred CCHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_conf 60799999999999999999---99985311
No 106
>PRK12806 flagellin; Provisional
Probab=38.42 E-value=28 Score=15.07 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 349999999999999999999999999999999871
Q gi|254780378|r 225 VDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITK 260 (262)
Q Consensus 225 Vd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~ 260 (262)
+|+++||++|-..|=.=|+.+-|+..+.++-+.+.+
T Consensus 436 aDmA~E~s~ltk~qILqQA~~amLAQANq~pQ~VL~ 471 (475)
T PRK12806 436 ADYAAEMASLTKNQILQQAGTAMLAQANSLPQSVLS 471 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 229999999999999999999999996507689998
No 107
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=37.42 E-value=12 Score=17.37 Aligned_cols=137 Identities=15% Similarity=0.176 Sum_probs=59.8
Q ss_pred EEECCCCEEEEECCCCCE--EEEEEEEEEECCCCCCCCCCCCCC--CCC--CCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 232377526531489857--787521223525883414667610--443--10135653221013312552158865432
Q gi|254780378|r 96 LALVGRGWFQVETPDKTV--MYTRAGSFNIDSKGQLVTADGNTL--VPG--IVIPEETREIKVSRSGQILAVTGKNSDFQ 169 (262)
Q Consensus 96 ~Ai~G~Gff~V~~~~G~~--~yTR~G~f~~d~~G~Lvt~~G~~v--l~~--~~~p~~~~~i~i~~dG~I~~~~~~~~~~~ 169 (262)
+++..+++|++++|.|-. .|-|. .+++.+.++--.+ ++. +.--.+++-+.|+++|.............
T Consensus 179 vil~~~~l~a~RDp~GiRPL~~G~~------~~~~vvASEs~Al~~lg~~~irdv~PGEiv~I~~~g~~s~~~~~~~~~~ 252 (472)
T PRK05793 179 VILTEDKLIGVRDPHGIRPLCLGKI------EDGYILSSESCALDTIGAEFVRDIEPGEIVIIDEDGIKSIKFSEKTKCQ 252 (472)
T ss_pred EEEECCEEEEEECCCCCCCEEEEEE------CCEEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCC
T ss_conf 9987997999978888762599872------7689998443000143866998169974999958970798405888776
Q ss_pred CCCCCCEEECCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2211000002662001----------006886433466665520002467762068607300102349999999999999
Q gi|254780378|r 170 PVGQLLIANFINEAGL----------RNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQR 239 (262)
Q Consensus 170 ~i~~i~l~~f~n~~~L----------~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~qR 239 (262)
.-----+.|..|+.. ++.|..|....+...+...+.|+.... ---||-|.|++....-+++==-.-|
T Consensus 253 -~C~FE~IYFaRpdS~i~g~~Vy~~R~~lG~~LA~e~~~~~DvV~~VPdSg~~--aA~gya~~sgip~~~glikn~yvgR 329 (472)
T PRK05793 253 -TCAFEYIYFARPDSVIDGISVYESRVRAGEQLYKEYPVDADIVIGVPDSGIP--AAIGYAKASGIPYGIGFIKNKYVGR 329 (472)
T ss_pred -CCEEEEEECCCCCCEECCEEHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHH--HHHHHHHHCCCCHHHHHHHCCCCCC
T ss_conf -6537652013897304770899999999999873578888879817997599--9999998619943440122052155
Q ss_pred HH
Q ss_conf 99
Q gi|254780378|r 240 AY 241 (262)
Q Consensus 240 ~y 241 (262)
.|
T Consensus 330 TF 331 (472)
T PRK05793 330 TF 331 (472)
T ss_pred CC
T ss_conf 57
No 108
>PRK12803 flagellin; Provisional
Probab=37.35 E-value=29 Score=14.97 Aligned_cols=38 Identities=8% Similarity=0.164 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23499999999999999999999999999999998715
Q gi|254780378|r 224 NVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 224 NVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
.+|.++||++|...|=..|+...|+..+.++-+.+.+|
T Consensus 296 DaD~A~E~~~ltk~qil~Qa~~amLaQAN~~pq~vL~L 333 (335)
T PRK12803 296 DATMTDEVVASTTNSILTQSAMAMIAQANQVPQYVLSL 333 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 30599999999999999999999999976176899984
No 109
>PRK12807 flagellin; Provisional
Probab=36.56 E-value=30 Score=14.89 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 023499999999999999999999999999999998715
Q gi|254780378|r 223 SNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 223 SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
-.+|+++|+++|...|=.||+...|+..+.++-+.+.+|
T Consensus 247 ~DaD~A~e~~~l~~~qil~Qaa~a~lsqAN~~~q~vL~L 285 (287)
T PRK12807 247 EDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKL 285 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 710499999999999999999999999984678999985
No 110
>PRK12584 flagellin A; Reviewed
Probab=35.02 E-value=31 Score=14.74 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 349999999999999999999999999999999871
Q gi|254780378|r 225 VDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITK 260 (262)
Q Consensus 225 Vd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~ 260 (262)
+|+++||++|-..|=.=|+.+-|+..+.++-+.+.+
T Consensus 472 aD~A~Ema~~tk~qIL~QAgtamLAQANq~pQ~VL~ 507 (510)
T PRK12584 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILR 507 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 308999999999999999999999986176688986
No 111
>pfam09695 YtfJ_HI0045 Bacterial protein of unknown function (YtfJ_HI0045). These are sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=34.21 E-value=14 Score=16.98 Aligned_cols=73 Identities=26% Similarity=0.330 Sum_probs=41.5
Q ss_pred CCCCCCCCC-CCEEEEEECCCCEEEEEC-CCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 357873326-521212323775265314-898577875212235258834146676104431013565322101331255
Q gi|254780378|r 82 YTQGEVVHT-GNNLDLALVGRGWFQVET-PDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQIL 159 (262)
Q Consensus 82 ~~qG~l~~T-g~~lD~Ai~G~Gff~V~~-~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~ 159 (262)
|-....+.| =-++|-||=|.|+|+-.. .+....|.+ ..|.+|.+|.++..=+.. +....-+-+|.+|.|.
T Consensus 81 fp~~~YqtttIIN~ddAiwgtg~fV~ss~e~~Kk~fP~-S~~VlD~~G~v~~aW~L~-------~~sSaIiVlDk~G~V~ 152 (174)
T pfam09695 81 FPRDKYQTTTIINLDDAIWGTGSFVKSSAEDSKKEFPW-SQFVLDSNGVVQKAWDLQ-------EESSAIIVLDKQGKVL 152 (174)
T ss_pred CCHHHCCEEEEEECCCCEECCHHHHHHHHHHCCCCCCC-CEEEEECCCCHHHCCCCC-------CCCCEEEEECCCCCEE
T ss_conf 98100420789836765322448875567651331887-269991787153402689-------7786599995888789
Q ss_pred ECC
Q ss_conf 215
Q gi|254780378|r 160 AVT 162 (262)
Q Consensus 160 ~~~ 162 (262)
..-
T Consensus 153 f~k 155 (174)
T pfam09695 153 FVK 155 (174)
T ss_pred EEE
T ss_conf 987
No 112
>PRK13588 flagellin B; Provisional
Probab=32.66 E-value=34 Score=14.51 Aligned_cols=42 Identities=5% Similarity=0.050 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999659997754217773400002229999987640
Q gi|254780378|r 7 AAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEK 49 (262)
Q Consensus 7 a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~ 49 (262)
-++.|+..+|.|.|-|-|=.|-+.- =++-+..|..+..+-.+
T Consensus 84 Ev~~iLqRmRELAVQAAN~t~s~~d-R~alQ~Ei~qL~~EIdr 125 (514)
T PRK13588 84 EQIKILDTIKTKAVQAAQDGQTLES-RRALQSDIQRLLEELDN 125 (514)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHH
T ss_conf 9999999999999987037898889-99999999999999987
No 113
>PRK13589 flagellin; Provisional
Probab=32.14 E-value=35 Score=14.46 Aligned_cols=20 Identities=5% Similarity=-0.132 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999965999775421
Q gi|254780378|r 8 AAGMSAQQTNLEIIANNIAN 27 (262)
Q Consensus 8 ~sgm~a~~~~l~~isnNlAN 27 (262)
++.++..+|.|.|-|-|=.|
T Consensus 85 v~~iLqRmRELAVQAAN~tn 104 (573)
T PRK13589 85 QLKILDTIKTKATQAAQDGQ 104 (573)
T ss_pred HHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999704689
No 114
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=32.02 E-value=35 Score=14.44 Aligned_cols=21 Identities=0% Similarity=0.132 Sum_probs=9.2
Q ss_pred ECCHHHH--HHHHHHHHHHHHHH
Q ss_conf 0730010--23499999999999
Q gi|254780378|r 217 QGYLEAS--NVDAVKEISEMISA 237 (262)
Q Consensus 217 qG~LE~S--NVd~~~Emv~lI~~ 237 (262)
..|-+++ -+++++..+++.+.
T Consensus 429 ~~wa~GG~Ga~eLA~~Vv~~~e~ 451 (577)
T PRK13506 429 EAFSQGGEGATALAQTVVRACEQ 451 (577)
T ss_pred CHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 13404663699999999999608
No 115
>pfam09155 DUF1940 Domain of unknown function (DUF1940). Members of this family adopt a secondary structure consisting of six alpha helices, with four long helices (alpha1, alpha2, alpha5, alpha6) form a left-handed, antiparallel alpha helical bundle. The function of this family of Archaeal hypothetical proteins has not, as yet, been defined.
Probab=30.78 E-value=33 Score=14.64 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_conf 001023499999999999--99999999999
Q gi|254780378|r 220 LEASNVDAVKEISEMISA--QRAYEMNSKVI 248 (262)
Q Consensus 220 LE~SNVd~~~Emv~lI~~--qR~ye~n~k~i 248 (262)
-|+|+|.-++||.+++++ |-.|.-.++.-
T Consensus 34 SEg~kV~e~re~lDilDt~~~~LyD~es~L~ 64 (143)
T pfam09155 34 SEGSKVPETRECLDILDTVYNSLYDKESKLN 64 (143)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 6125757899999999999985357066876
No 116
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.37 E-value=39 Score=14.17 Aligned_cols=23 Identities=4% Similarity=0.108 Sum_probs=11.4
Q ss_pred CCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 11000002662001006886433
Q gi|254780378|r 172 GQLLIANFINEAGLRNIGDNLLA 194 (262)
Q Consensus 172 ~~i~l~~f~n~~~L~~~g~~l~~ 194 (262)
.+|.+..-+.+-.|.+..++.|.
T Consensus 246 d~v~I~~s~~~~~lir~~~~~y~ 268 (278)
T PRK03708 246 TEITIVKSPRKTKFVRFTKEIYP 268 (278)
T ss_pred CEEEEEECCCEEEEEEECCCCHH
T ss_conf 99999988974899997897558
No 117
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.36 E-value=4.9 Score=19.67 Aligned_cols=11 Identities=18% Similarity=0.809 Sum_probs=3.9
Q ss_pred CCCCEEEEEEE
Q ss_conf 89857787521
Q gi|254780378|r 109 PDKTVMYTRAG 119 (262)
Q Consensus 109 ~~G~~~yTR~G 119 (262)
+.....|.+.|
T Consensus 207 p~~~~~~~~~g 217 (1061)
T COG3321 207 PESSYLFSAGG 217 (1061)
T ss_pred CCHHHHHHHHC
T ss_conf 60444344303
No 118
>KOG0404 consensus
Probab=28.92 E-value=27 Score=15.13 Aligned_cols=14 Identities=21% Similarity=0.071 Sum_probs=6.9
Q ss_pred CCCCCCCCEEECCC
Q ss_conf 32221100000266
Q gi|254780378|r 168 FQPVGQLLIANFIN 181 (262)
Q Consensus 168 ~~~i~~i~l~~f~n 181 (262)
+..+..|.+.+...
T Consensus 223 ~~~l~~l~ikn~~t 236 (322)
T KOG0404 223 GKLLNGLRIKNVKT 236 (322)
T ss_pred CCCCCCEEEEECCC
T ss_conf 14024369874144
No 119
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=27.37 E-value=42 Score=13.95 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=44.4
Q ss_pred CCCEEEEEE------CCCCEEEEECCCCC-EEEEEEEEEEECCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCEEEE
Q ss_conf 652121232------37752653148985-7787521223525883414667610443101--35653221013312552
Q gi|254780378|r 90 TGNNLDLAL------VGRGWFQVETPDKT-VMYTRAGSFNIDSKGQLVTADGNTLVPGIVI--PEETREIKVSRSGQILA 160 (262)
Q Consensus 90 Tg~~lD~Ai------~G~Gff~V~~~~G~-~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~--p~~~~~i~i~~dG~I~~ 160 (262)
.+..+|+|+ ...-||.+....+. -.-+|.+...++ .|...-.+-..++..+.- -.....|.+++||.+|+
T Consensus 114 ~~Gll~~al~~~fa~~~~~~~~~a~~~~~~~~~n~~~~~~~~-~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyv 192 (399)
T COG2133 114 QGGLLDIALSPDFAQGRLVYFGISEPGGGLYVANRVAIGRLP-GGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYV 192 (399)
T ss_pred CCCCCCEEECCCCCCCCEEEEEEEEECCCCEEEEEEEEEECC-CCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCEEE
T ss_conf 887433084244014660456999616970477778999717-9865335640785048887776763078889983899
Q ss_pred CCCCC
Q ss_conf 15886
Q gi|254780378|r 161 VTGKN 165 (262)
Q Consensus 161 ~~~~~ 165 (262)
..+++
T Consensus 193 s~G~~ 197 (399)
T COG2133 193 TTGSN 197 (399)
T ss_pred EECCC
T ss_conf 94788
No 120
>PRK08411 flagellin; Reviewed
Probab=27.10 E-value=43 Score=13.92 Aligned_cols=20 Identities=5% Similarity=-0.132 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999965999775421
Q gi|254780378|r 8 AAGMSAQQTNLEIIANNIAN 27 (262)
Q Consensus 8 ~sgm~a~~~~l~~isnNlAN 27 (262)
++.++..+|.|.|-|-|=.|
T Consensus 85 v~~iLqRmRELAVQAAN~tn 104 (573)
T PRK08411 85 QLKILDTIKTKATQAAQDGQ 104 (573)
T ss_pred HHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999614689
No 121
>PRK12808 flagellin; Provisional
Probab=26.79 E-value=43 Score=13.89 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 349999999999999999999999999999999871
Q gi|254780378|r 225 VDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITK 260 (262)
Q Consensus 225 Vd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~ 260 (262)
+|+++||++|-..|=.=|+..-|+..+.++-+.+.+
T Consensus 422 aDmA~E~a~ltk~qILqQAgtamLAQANq~pq~vL~ 457 (460)
T PRK12808 422 ADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSK 457 (460)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 659999999999999999999999996517478998
No 122
>PRK07192 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=26.78 E-value=43 Score=13.89 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0234999999999999999999999999999
Q gi|254780378|r 223 SNVDAVKEISEMISAQRAYEMNSKVIEAADE 253 (262)
Q Consensus 223 SNVd~~~Emv~lI~~qR~ye~n~k~i~t~De 253 (262)
-.||+++++++|-..|-+||+..++....-+
T Consensus 268 ~d~D~a~a~t~l~~~q~~~qAs~~~~a~i~~ 298 (305)
T PRK07192 268 QDLDYAEAYTDLSNQMAALEATQKTFVKVNS 298 (305)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4557999999999999999999999998816
No 123
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=26.06 E-value=45 Score=13.81 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=23.3
Q ss_pred CCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCC
Q ss_conf 873326521212323775265314898577875212235258
Q gi|254780378|r 85 GEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSK 126 (262)
Q Consensus 85 G~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~ 126 (262)
|.+.-+==+.+=.|-+.-=+++.++.|.+.|| |+|++|.+
T Consensus 133 ~~~~v~f~~vtHSIPds~g~~i~Tp~G~Iv~T--GDFk~d~~ 172 (555)
T COG0595 133 GSFEVEFFPVTHSIPDSLGIVIKTPEGNIVYT--GDFKFDPT 172 (555)
T ss_pred CCEEEEEEEECCCCCCCEEEEEECCCCCEEEE--CCEEECCC
T ss_conf 76799999603557451689998798438996--87785588
No 124
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=25.17 E-value=26 Score=15.23 Aligned_cols=140 Identities=13% Similarity=0.150 Sum_probs=55.6
Q ss_pred EEECCCCEEEEECCCCCE--EEEEEEEEEECCC-CCCCCCCCCCC--CCC--CCCCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 232377526531489857--7875212235258-83414667610--443--1013565322101331255215886543
Q gi|254780378|r 96 LALVGRGWFQVETPDKTV--MYTRAGSFNIDSK-GQLVTADGNTL--VPG--IVIPEETREIKVSRSGQILAVTGKNSDF 168 (262)
Q Consensus 96 ~Ai~G~Gff~V~~~~G~~--~yTR~G~f~~d~~-G~Lvt~~G~~v--l~~--~~~p~~~~~i~i~~dG~I~~~~~~~~~~ 168 (262)
+.+.+++.+++++|.|-. .|-|.++ +.. .|.+.++--.+ ++. +.--.+++-+.|+.+|.-+.........
T Consensus 191 vilt~~~lia~RDP~GiRPL~lG~~~~---~~~~~yvvASEs~Ald~lg~e~iRdv~PGEiv~I~~~g~~s~~~~~~~~~ 267 (495)
T PRK07349 191 VIGTPEGLMGVRDPNGIRPLVIGTLEE---NGPGRYVLASETCALDIIGADYLRDVEPGELVWITEGGLESFRWAEKPQR 267 (495)
T ss_pred EEEECCEEEEEECCCCCCCEEEEEECC---CCCCEEEEEECHHHHHCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCC
T ss_conf 997498699998988875238999548---88857999987464204496588638998599981796368861588876
Q ss_pred CCCCCCCEEECCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 22211000002662001----------00688643346666552000246776206860730010234999999999999
Q gi|254780378|r 169 QPVGQLLIANFINEAGL----------RNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQ 238 (262)
Q Consensus 169 ~~i~~i~l~~f~n~~~L----------~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~q 238 (262)
.. =----+.|..|+.. ++.|.-|.+..+...+-..+.|+.... ---||-|.|++--..-+++==-.-
T Consensus 268 ~~-C~FEyIYFaRPDS~i~g~~Vy~~R~~~G~~LA~e~~v~~DiVi~VPdSg~~--aA~gya~~sgipy~~glikn~Yvg 344 (495)
T PRK07349 268 KL-CVFEMIYFARPDSRMHGESLYSYRQRLGQQLAKESPVDADLVIGVPDSGIP--AAIGFSQASGIPYAEGLIKNRYVG 344 (495)
T ss_pred CC-CCCHHHHHCCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHH--HHHHHHHHCCCCCHHHHHHCCCCC
T ss_conf 54-301122204775124781899999999998726068888638978996299--999999973997122012045446
Q ss_pred HHH
Q ss_conf 999
Q gi|254780378|r 239 RAY 241 (262)
Q Consensus 239 R~y 241 (262)
|.|
T Consensus 345 RTF 347 (495)
T PRK07349 345 RTF 347 (495)
T ss_pred CCC
T ss_conf 555
No 125
>PRK08026 flagellin; Validated
Probab=25.00 E-value=47 Score=13.69 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 349999999999999999999999999999999
Q gi|254780378|r 225 VDAVKEISEMISAQRAYEMNSKVIEAADEMSSL 257 (262)
Q Consensus 225 Vd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~ 257 (262)
+|+++||++|-..|=.=|+.+-|+..+.++-+.
T Consensus 527 aD~A~E~a~ltk~qILqQAgtamLAQANq~pQ~ 559 (566)
T PRK08026 527 ADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQ 559 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 409999999999999999999999997127789
No 126
>KOG3559 consensus
Probab=24.78 E-value=47 Score=13.66 Aligned_cols=15 Identities=40% Similarity=0.820 Sum_probs=13.0
Q ss_pred CCEEEEECCCCCEEE
Q ss_conf 752653148985778
Q gi|254780378|r 101 RGWFQVETPDKTVMY 115 (262)
Q Consensus 101 ~Gff~V~~~~G~~~y 115 (262)
+|||.|.+++|.++|
T Consensus 89 DGF~fvva~dGkimY 103 (598)
T KOG3559 89 DGFIFVVAPDGKIMY 103 (598)
T ss_pred CCEEEEEECCCCEEE
T ss_conf 545999927998899
No 127
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.49 E-value=26 Score=15.27 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=13.2
Q ss_pred EECCCCCEEEEEEEEEEECCCC
Q ss_conf 3148985778752122352588
Q gi|254780378|r 106 VETPDKTVMYTRAGSFNIDSKG 127 (262)
Q Consensus 106 V~~~~G~~~yTR~G~f~~d~~G 127 (262)
+.++++ +.|-.+|.|.+..|.
T Consensus 128 ~~DpE~-Ieyig~n~fvi~dER 148 (316)
T COG3204 128 FSDPET-IEYIGGNQFVIVDER 148 (316)
T ss_pred CCCHHH-EEEECCCEEEEEEHH
T ss_conf 689458-079549779988612
No 128
>PRK06437 hypothetical protein; Provisional
Probab=24.38 E-value=26 Score=15.27 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=18.9
Q ss_pred EEEEECCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf 1223525883414667610443-10135
Q gi|254780378|r 119 GSFNIDSKGQLVTADGNTLVPG-IVIPE 145 (262)
Q Consensus 119 G~f~~d~~G~Lvt~~G~~vl~~-~~~p~ 145 (262)
-+|.+|+++|.+--+|.|++.. +.-|+
T Consensus 28 k~~~ldee~yvvIvNGsP~~~D~~Vk~e 55 (67)
T PRK06437 28 KDLGLDEEEYVVIVNGSPVLEDHNVKKE 55 (67)
T ss_pred HHCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 9819992107999869854444534855
No 129
>pfam01287 eIF-5a Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold. eIF5A, previously thought to be an initiation factor, has been shown to be required for peptide chain elongation in yeast.
Probab=24.13 E-value=49 Score=13.59 Aligned_cols=17 Identities=18% Similarity=0.507 Sum_probs=11.0
Q ss_pred EEECCCCEEEEECCCCC
Q ss_conf 23237752653148985
Q gi|254780378|r 96 LALVGRGWFQVETPDKT 112 (262)
Q Consensus 96 ~Ai~G~Gff~V~~~~G~ 112 (262)
+.|+++||..+.+.+|+
T Consensus 10 i~I~~Dg~lsLMde~g~ 26 (69)
T pfam01287 10 IDISGDGFLSLMDEDGE 26 (69)
T ss_pred EEECCCCEEEEECCCCC
T ss_conf 86668863776648898
No 130
>PRK06663 flagellar hook-associated protein FlgL; Validated
Probab=23.74 E-value=50 Score=13.54 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02349999999999999999999999999
Q gi|254780378|r 223 SNVDAVKEISEMISAQRAYEMNSKVIEAA 251 (262)
Q Consensus 223 SNVd~~~Emv~lI~~qR~ye~n~k~i~t~ 251 (262)
.-+|++++|++|-..+-.|||.+++....
T Consensus 382 ~DaD~a~~it~l~~~~~~~qAa~~~~a~i 410 (420)
T PRK06663 382 TDLDVTKAITNLKMLELAHQVSLGVSAKI 410 (420)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 05239999999999999999999999987
No 131
>PRK07701 flgL flagellar hook-associated protein FlgL; Validated
Probab=22.88 E-value=52 Score=13.44 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0234999999999999999999999999999
Q gi|254780378|r 223 SNVDAVKEISEMISAQRAYEMNSKVIEAADE 253 (262)
Q Consensus 223 SNVd~~~Emv~lI~~qR~ye~n~k~i~t~De 253 (262)
-.||+++|+++|-..|-+||+..+++...-+
T Consensus 263 ~D~D~a~a~~~l~~~q~~~qAa~~~~a~i~q 293 (301)
T PRK07701 263 EDVDLAEVITDLKTQENVYRAALAVGARIIQ 293 (301)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 5545999999999999999999999998835
No 132
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=22.68 E-value=43 Score=13.93 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=25.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6886433466665520002467762068607300102349999999999999999
Q gi|254780378|r 188 IGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRAYE 242 (262)
Q Consensus 188 ~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~qR~ye 242 (262)
.|..|....+..++-..+.|+.... ---||-|.|++-...-+++==-.-|.|=
T Consensus 264 ~G~~La~~~~v~~D~Vi~VPdsg~~--~a~gya~~~~ip~~~~likn~y~gRtFI 316 (445)
T PRK08525 264 MGEELAKKFAVKADFVVPVPDSGVS--AAIGYAQESGIPFEMAIVRNHYVGRTFI 316 (445)
T ss_pred HHHHHHHHCCCCCCCEEECCCCHHH--HHHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 9999862568678817865898578--8999999829945553122200263014
No 133
>COG3816 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.40 E-value=22 Score=15.67 Aligned_cols=49 Identities=27% Similarity=0.455 Sum_probs=31.5
Q ss_pred CEEEEEECCCC-EEEEECCCCCEEEEE--EEEEEECCCC--CCCCCC---CCCCCCC
Q ss_conf 21212323775-265314898577875--2122352588--341466---7610443
Q gi|254780378|r 92 NNLDLALVGRG-WFQVETPDKTVMYTR--AGSFNIDSKG--QLVTAD---GNTLVPG 140 (262)
Q Consensus 92 ~~lD~Ai~G~G-ff~V~~~~G~~~yTR--~G~f~~d~~G--~Lvt~~---G~~vl~~ 140 (262)
.++|+-|..+| ||-.-+|=|...+-| .--++.|+|| ||||.- |-.|-|.
T Consensus 43 GdiDmeIr~DGtWFylGTPIGR~plVrLFStvlRkD~Dg~tyLVTPVEKvgIrV~DA 99 (205)
T COG3816 43 GDIDMEIRADGTWFYLGTPIGRKPLVRLFSTVLRKDEDGKTYLVTPVEKVGIRVEDA 99 (205)
T ss_pred CCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHEECCCCCEEEEEEHHHCCEEECCC
T ss_conf 643258822735898357052678999988871578889879972417514585068
No 134
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=21.82 E-value=54 Score=13.31 Aligned_cols=27 Identities=33% Similarity=0.625 Sum_probs=21.1
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEE
Q ss_conf 265212123237752653148985778
Q gi|254780378|r 89 HTGNNLDLALVGRGWFQVETPDKTVMY 115 (262)
Q Consensus 89 ~Tg~~lD~Ai~G~Gff~V~~~~G~~~y 115 (262)
.|.-.--+-+.|+|+|.|..++|..+.
T Consensus 93 H~d~EvRy~vaG~GiF~v~~~d~~~~~ 119 (181)
T COG1791 93 HTDDEVRYFVAGEGIFDVHSPDGKVYQ 119 (181)
T ss_pred CCCCEEEEEEECCEEEEEECCCCCEEE
T ss_conf 678117999936558999879996899
No 135
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=21.72 E-value=35 Score=14.43 Aligned_cols=136 Identities=14% Similarity=0.163 Sum_probs=55.1
Q ss_pred EECCCCEEEEECCCCCE--EEEEEEEEEECCCCCCCCCCCCC--CCCC--CCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 32377526531489857--78752122352588341466761--0443--101356532210133125521588654322
Q gi|254780378|r 97 ALVGRGWFQVETPDKTV--MYTRAGSFNIDSKGQLVTADGNT--LVPG--IVIPEETREIKVSRSGQILAVTGKNSDFQP 170 (262)
Q Consensus 97 Ai~G~Gff~V~~~~G~~--~yTR~G~f~~d~~G~Lvt~~G~~--vl~~--~~~p~~~~~i~i~~dG~I~~~~~~~~~~~~ 170 (262)
.+..++.|++++|.|-. .|-+. .++|.+.++--. +++. +.--.+++-+.|+.+|............ .
T Consensus 172 il~~~~l~~~RDp~GiRPL~~Gk~------~~~~~vASEs~Al~~~g~~~irdv~PGEiv~I~~~g~~s~~~~~~~~~-~ 244 (475)
T PRK07631 172 IMTETEMIVALDPNGLRPLSLGRL------GDAYVVASETCAFDVIGATYLREVEPGELLIINDEGMKSERFSPNINR-S 244 (475)
T ss_pred EECCCEEEEEECCCCCCCEEEEEE------CCEEEEEECHHHHHCCCCEEEEECCCCEEEEEECCCEEEEECCCCCCC-C
T ss_conf 962873999999887643699998------999999965045424597799816996699997895689953798776-5
Q ss_pred CCCCCEEECCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 211000002662001----------0068864334666655200024677620686073001023499999999999999
Q gi|254780378|r 171 VGQLLIANFINEAGL----------RNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRA 240 (262)
Q Consensus 171 i~~i~l~~f~n~~~L----------~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~qR~ 240 (262)
.-----+.|..|+.. ++.|.-|....+...+-..+.|+..-. ---||-|.|++.-..-+++==-.-|.
T Consensus 245 ~C~FEyIYFaRpdS~i~g~~Vy~~R~~~G~~LA~e~~~~~DvVi~VPDSg~~--aA~gya~~sgip~~~glikn~yvgRT 322 (475)
T PRK07631 245 ICSMEYIYFARPDSNVDGINVHTARKNLGKQLAEEAPVEADVVTGVPDSSIS--AAIGYAEATGIPYELGLIKNRYVGRT 322 (475)
T ss_pred CCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH--HHHHHHHHCCCCHHHHHHCCCEECCC
T ss_conf 5503432126887320770699999999999983279878889978996388--99999987299545411001301465
Q ss_pred H
Q ss_conf 9
Q gi|254780378|r 241 Y 241 (262)
Q Consensus 241 y 241 (262)
|
T Consensus 323 F 323 (475)
T PRK07631 323 F 323 (475)
T ss_pred C
T ss_conf 7
No 136
>KOG1152 consensus
Probab=21.46 E-value=55 Score=13.26 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=7.6
Q ss_pred EECCCCCCCCCCCCCCC
Q ss_conf 00266200100688643
Q gi|254780378|r 177 ANFINEAGLRNIGDNLL 193 (262)
Q Consensus 177 ~~f~n~~~L~~~g~~l~ 193 (262)
..|.+...|++.|.|.|
T Consensus 558 ~k~s~yttlq~lG~GAy 574 (772)
T KOG1152 558 KKFSDYTTLQPLGEGAY 574 (772)
T ss_pred CCCCCCEEEEECCCCCC
T ss_conf 01234135301366653
No 137
>pfam08450 SGL SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.
Probab=20.65 E-value=57 Score=13.16 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=18.4
Q ss_pred CCEEEEEECCCC--EEEEECCCCCEEEEEEEEEEECCCCCC
Q ss_conf 521212323775--265314898577875212235258834
Q gi|254780378|r 91 GNNLDLALVGRG--WFQVETPDKTVMYTRAGSFNIDSKGQL 129 (262)
Q Consensus 91 g~~lD~Ai~G~G--ff~V~~~~G~~~yTR~G~f~~d~~G~L 129 (262)
.++-|++++-+| ||.-...+.....-..+=++++++|.+
T Consensus 86 ~~~ND~~vd~~G~l~ftd~~~~~~~~~~~g~vy~~~~~g~~ 126 (246)
T pfam08450 86 NRFNDGKVDPDGRFWFGTMGFDIAPGGEPGALYRLDPDGKV 126 (246)
T ss_pred CCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCCCE
T ss_conf 89857899789999973445566678887789999499999
Done!