HHsearch alignment for GI: 254780378 and conserved domain: pfam06429
>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=98.90 E-value=2.3e-09 Score=76.42 Aligned_cols=39 Identities=54% Similarity=0.755 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 023499999999999999999999999999999998715
Q gi|254780378|r 223 SNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 223 SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262)
T Consensus 1 SnV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~~ 39 (39)
T pfam06429 1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL 39 (39)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988789999999999999899999998899999998763