HHsearch alignment for GI: 254780378 and conserved domain: pfam06429

>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=98.90  E-value=2.3e-09  Score=76.42  Aligned_cols=39  Identities=54%  Similarity=0.755  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             023499999999999999999999999999999998715
Q gi|254780378|r  223 SNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM  261 (262)
Q Consensus       223 SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l  261 (262)
T Consensus         1 SnV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~~   39 (39)
T pfam06429         1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL   39 (39)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             988789999999999999899999998899999998763