Query         gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 262
No_of_seqs    139 out of 2802
Neff          7.2 
Searched_HMMs 33803
Date          Wed Jun  1 12:52:37 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780378.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3a69_A Flagellar HOOK protein 100.0 4.3E-29 1.3E-33  195.9   7.0  113   70-218     1-113 (113)
  2 >1wlg_A Flagellar HOOK protein  99.8 1.3E-21 3.9E-26  150.4   7.0   81   93-209     1-81  (83)
  3 >1wlg_A Flagellar HOOK protein  94.6   0.011 3.4E-07   35.3   1.1   51  141-229     9-59  (59)
  4 >2p4o_A Hypothetical protein;   80.9     3.5  0.0001   20.1   5.0   99   91-200     2-119 (143)
  5 >1q7f_A NHL, brain tumor CG107  79.5     3.1 9.2E-05   20.5   4.4   57   91-162    59-119 (143)
  6 >2z2n_A Virginiamycin B lyase;  73.1     5.9 0.00017   18.8   4.5   60   92-165     3-64  (84)
  7 >1ucu_A Phase 1 flagellin; fla  71.1     5.1 0.00015   19.2   3.7   48  214-261    30-78  (80)
  8 >1w79_A D-alanyl-D-alanine car  57.6     6.8  0.0002   18.4   2.2   20  102-121    24-43  (137)
  9 >3a69_A Flagellar HOOK protein  40.1      12 0.00036   16.9   1.3   28  146-174    18-45  (45)
 10 >1ory_B Flagellin; flagellar c  39.6      16 0.00046   16.2   1.7   38  224-261    16-53  (55)
 11 >3d8x_A Thioredoxin reductase   36.7      10 0.00031   17.3   0.5   17  118-134    22-38  (40)
 12 >1lln_A Antiviral protein 3; r  35.5      22 0.00066   15.3   2.0   24   11-34      8-31  (57)
 13 >1nig_A Hypothetical protein T  34.7      24  0.0007   15.1   2.0   19  220-238    22-40  (135)
 14 >3hfq_A Uncharacterized protei  33.5      25 0.00075   14.9   2.0   82   96-188     3-90  (97)
 15 >1ri6_A Putative isomerase YBH  33.2      29 0.00086   14.6   5.8   70  108-188    46-123 (150)
 16 >3hfq_A Uncharacterized protei  32.8      29 0.00087   14.5   5.2   86   92-188     3-93  (101)
 17 >3h2y_A GTPase family protein;  31.2      31 0.00093   14.4   2.7   26   86-111    92-117 (136)
 18 >2jkb_A Sialidase B; intramole  30.7      32 0.00095   14.3   3.5   58   98-177    13-71  (103)
 19 >1uj6_A Ribose 5-phosphate iso  29.2      22 0.00065   15.3   1.1   23  118-140    28-50  (80)
 20 >3ec1_A YQEH GTPase; atnos1, a  28.5      35   0.001   14.1   3.0   25   87-111    92-116 (135)
 21 >1yx3_A Hypothetical protein D  27.9      25 0.00075   14.9   1.2   14  120-133    31-44  (61)
 22 >2f8m_A Ribose 5-phosphate iso  27.5      26 0.00078   14.8   1.3   23  118-140    31-53  (84)
 23 >3bk2_A RNAse J, metal depende  27.5      31 0.00092   14.4   1.6   27  100-128    24-50  (134)
 24 >1cru_A Protein (soluble quino  23.5      43  0.0013   13.5   2.8   13   91-103    27-39  (190)
 25 >2bf6_A Sialidase, EXO-alpha-s  22.9      44  0.0013   13.4   2.4   56   98-178    10-65  (67)
 26 >2w5e_A Putative serine protea  22.7      38  0.0011   13.8   1.4   35  117-159    19-54  (80)
 27 >3dsm_A Uncharacterized protei  22.4      45  0.0013   13.4   4.9   57   91-162    44-101 (144)
 28 >2phl_A Phaseolin; plant SEED   20.9      49  0.0014   13.2   2.5   39   99-138    73-114 (202)
 29 >3fgb_A Uncharacterized protei  20.2      51  0.0015   13.1   3.6   38  146-189    49-87  (98)

No 1  
>>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} (A:48-116,A:315-358)
Probab=99.95  E-value=4.3e-29  Score=195.93  Aligned_cols=113  Identities=33%  Similarity=0.647  Sum_probs=107.5

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44202112322335787332652121232377526531489857787521223525883414667610443101356532
Q gi|254780378|r   70 GSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETRE  149 (262)
Q Consensus        70 g~gv~~~~~~~~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~  149 (262)
                      |.||++.+++++|+||+++.|++|||+||+|+|||.|++++|+++|||+|+|++|++|||||.+|++||           
T Consensus         1 G~Gv~~~~~~~~~~qG~l~~T~~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~ld~~G~Lvt~~G~~vl-----------   69 (113)
T 3a69_A            1 GLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLT-----------   69 (113)
T ss_dssp             -----------------------CEECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEE-----------
T ss_pred             CCCEEEEEEEEEECCCCEEECCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------
T ss_conf             676477679996045545762645566622786036751578600013454220478871235674002-----------


Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             210133125521588654322211000002662001006886433466665520002467762068607
Q gi|254780378|r  150 IKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQG  218 (262)
Q Consensus       150 i~i~~dG~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG  218 (262)
                                               +|++|+||+.|+++|++.|.++..+|+|.++.|+..++++|..|
T Consensus        70 -------------------------al~~f~n~~gL~~~g~~~~~~t~~sG~~~~g~~g~~~~G~i~~G  113 (113)
T 3a69_A           70 -------------------------VLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNG  113 (113)
T ss_dssp             -------------------------CEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCCC-
T ss_pred             -------------------------CCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             -------------------------34566786774413784476133567730167887872547107


No 2  
>>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} (A:1-46,A:245-281)
Probab=99.85  E-value=1.3e-21  Score=150.41  Aligned_cols=81  Identities=35%  Similarity=0.655  Sum_probs=76.2

Q ss_pred             EEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             12123237752653148985778752122352588341466761044310135653221013312552158865432221
Q gi|254780378|r   93 NLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVG  172 (262)
Q Consensus        93 ~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~~~~~~~~~~~i~  172 (262)
                      .||+||+|+|||.|++++|+++|||+|+|++|++|+|||.+|++||                                  
T Consensus         1 AlDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lv~~~G~~vl----------------------------------   46 (83)
T 1wlg_A            1 GLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLT----------------------------------   46 (83)
T ss_dssp             CEECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEE----------------------------------
T ss_pred             CCCEEECCCCEEEEECCCCCEEEECCCCEEECCCCCEECCCCCEEE----------------------------------
T ss_conf             9657875870799876999888844887239899988879999898----------------------------------


Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             1000002662001006886433466665520002467
Q gi|254780378|r  173 QLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDD  209 (262)
Q Consensus       173 ~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~  209 (262)
                        .|++|.||+.|+++|+++|..+.+||.|..+.|+.
T Consensus        47 --~la~F~N~~GL~~~G~n~~~~T~~SG~p~~g~pgt   81 (83)
T 1wlg_A           47 --VLANFANNEGLASQGDNVWAATQASGVALLGTAGS   81 (83)
T ss_dssp             --CEEECSCGGGSEECSTTCEECCTTTCCCEEECTTB
T ss_pred             --EEEECCCHHHHHHCCCCEEECCCCCCCCEECCCCC
T ss_conf             --99960797881311597277644578744357998


No 3  
>>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} (A:47-61,A:219-244,A:282-299)
Probab=94.59  E-value=0.011  Score=35.27  Aligned_cols=51  Identities=31%  Similarity=0.464  Sum_probs=32.7

Q ss_pred             CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCH
Q ss_conf             10135653221013312552158865432221100000266200100688643346666552000246776206860730
Q gi|254780378|r  141 IVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYL  220 (262)
Q Consensus       141 ~~~p~~~~~i~i~~dG~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~L  220 (262)
                      ..|....-.+.|..||+|...+. ++..+.+|||                                     ++++..|+|
T Consensus         9 ptiqqgavsyqin~dgtvvgnys-neq~q~lgqi-------------------------------------fg~lt~gal   50 (59)
T 1wlg_A            9 PTIQQGAVSYQINNDGTVVGNYS-NEQEQVLGQI-------------------------------------FGKLTNGAL   50 (59)
T ss_dssp             TBCCTTCEEEEECTTCEEEEEET-TSCEEEEEEE-------------------------------------BCCCSSCEE
T ss_pred             CCCCCCCEEEEECCCCEEEEEEC-CCCEEEEEEE-------------------------------------CEEEEECCE
T ss_conf             62125770257447616999908-9837788899-------------------------------------234851744


Q ss_pred             HHHHHHHHH
Q ss_conf             010234999
Q gi|254780378|r  221 EASNVDAVK  229 (262)
Q Consensus       221 E~SNVd~~~  229 (262)
                      |.||||+.+
T Consensus        51 e~snvdlsk   59 (59)
T 1wlg_A           51 EASNVDLSK   59 (59)
T ss_dssp             EEC------
T ss_pred             EHHHCCCCC
T ss_conf             223326268


No 4  
>>2p4o_A Hypothetical protein; ZP_00111901.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.90A {Nostoc punctiforme pcc 73102} (A:71-213)
Probab=80.93  E-value=3.5  Score=20.14  Aligned_cols=99  Identities=14%  Similarity=0.137  Sum_probs=45.5

Q ss_pred             CCEEEEEECCCCEEEEE-CCCCCE-EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf             52121232377526531-489857-7875212235258834146676104431013565322101331255215886543
Q gi|254780378|r   91 GNNLDLALVGRGWFQVE-TPDKTV-MYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDF  168 (262)
Q Consensus        91 g~~lD~Ai~G~Gff~V~-~~~G~~-~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~~~~~~~~~  168 (262)
                      +.|.++|++.+|.+-|. ..++.+ .|.+++....        .....+.+...-   ...+.++++|.+++....+...
T Consensus         2 g~P~gia~d~~g~l~v~d~~~~~i~~~d~~~~~~~--------~~~~~~~~~~~~---p~~i~vd~~g~l~v~~~~~~~I   70 (143)
T 2p4o_A            2 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT--------VETLLTLPDAIF---LNGITPLSDTQYLTADSYRGAI   70 (143)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC--------EEEEEECTTCSC---EEEEEESSSSEEEEEETTTTEE
T ss_pred             CCCCEEEECCCCCEEEEECCCCEEEEECCCCCCCE--------EEEECCCCCCCC---CCCEEECCCCCEEEEECCCCEE
T ss_conf             98534898889988998347843653025544310--------243012578653---3670098999787530245100


Q ss_pred             -----------------CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -----------------22211000002662001006886433466665
Q gi|254780378|r  169 -----------------QPVGQLLIANFINEAGLRNIGDNLLARTSVSG  200 (262)
Q Consensus       169 -----------------~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g  200 (262)
                                       ..........+..|..+.-.++.+|.....++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~lyv~d~~~~  119 (143)
T 2p4o_A           71 WLIDVVQPSGSIWLEHPXLARSNSESVFPAANGLKRFGNFLYVSNTEKX  119 (143)
T ss_dssp             EEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTT
T ss_pred             EEEEECCCCEEEEECCCCCCEECCCCCCCCCCEEEECCCCEEEECCCCC
T ss_conf             3564047723898405643112057777654255315980386116897


No 5  
>>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} (A:1-14,A:120-248)
Probab=79.54  E-value=3.1  Score=20.47  Aligned_cols=57  Identities=14%  Similarity=0.248  Sum_probs=25.4

Q ss_pred             CCEEEEEECCCC-EEEEECCCCCE-EEEEEEEEE--ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf             521212323775-26531489857-787521223--5258834146676104431013565322101331255215
Q gi|254780378|r   91 GNNLDLALVGRG-WFQVETPDKTV-MYTRAGSFN--IDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVT  162 (262)
Q Consensus        91 g~~lD~Ai~G~G-ff~V~~~~G~~-~yTR~G~f~--~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~~~  162 (262)
                      .-|.|+|+.-+| ||.....+..+ .|+++|.|-  +-.++.+--+               ..|.++.+|.+.+..
T Consensus        59 ~~P~gvai~~~g~~~~~d~~~~~v~v~~~~G~~l~~~~~~~~~~~P---------------~gI~~~~~G~ilV~d  119 (143)
T 1q7f_A           59 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYP---------------IGVGINSNGEILIAD  119 (143)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSE---------------EEEEECTTCCEEEEE
T ss_pred             CCCCEEEEEECCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCC---------------CEEEECCCCCEEEEE
T ss_conf             2101599960487999725741899993899879898888720575---------------255566889899997


No 6  
>>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, enzyme mechanism, virginiamycin B hydrolase, streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* (A:182-265)
Probab=73.11  E-value=5.9  Score=18.77  Aligned_cols=60  Identities=7%  Similarity=-0.059  Sum_probs=31.6

Q ss_pred             CEEEEEECCCCEEEEE-CCCCCEE-EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf             2121232377526531-4898577-875212235258834146676104431013565322101331255215886
Q gi|254780378|r   92 NNLDLALVGRGWFQVE-TPDKTVM-YTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKN  165 (262)
Q Consensus        92 ~~lD~Ai~G~Gff~V~-~~~G~~~-yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~~~~~~  165 (262)
                      .|..+|++.+|-+-|. ..+..+. |+.+|.+.        ..-+..-+      ..-..+.++++|.|++....+
T Consensus         3 ~P~gia~d~~g~i~v~d~~~~~I~~~~~~g~~~--------~~~~~~~~------~~P~gia~d~~G~i~v~d~~~   64 (84)
T 2z2n_A            3 GPVGITKGNDDALWFVEIIGNKIGRITTSGEIT--------EFKIPTPN------ARPHAITAGAGIDLWFTEWGA   64 (84)
T ss_dssp             CEEEEEECTTSSEEEEETTTTEEEEECTTCCEE--------EEECSSTT------CCEEEEEECSTTCEEEEETTT
T ss_pred             CEEEEEECCCCCEEEEECCCCEEEEEECCCCEE--------EEEEECCC------CCEEEEEECCCCCEEEEEECC
T ss_conf             013578806885899865799999990766236--------76321157------712679999998199998159


No 7  
>>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} (A:1-40,A:455-494)
Probab=71.09  E-value=5.1  Score=19.18  Aligned_cols=48  Identities=21%  Similarity=0.288  Sum_probs=39.7

Q ss_pred             EEEECCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             6860730010-23499999999999999999999999999999998715
Q gi|254780378|r  214 HVKQGYLEAS-NVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM  261 (262)
Q Consensus       214 ~v~qG~LE~S-NVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l  261 (262)
                      ++-+|+.=.| .+|.++||+++...|=-.|+..-|+..+.++-+.+.+|
T Consensus        30 rLSSG~RINsADaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~pq~vl~L   78 (80)
T 1ucu_A           30 RLSSGLRINSADSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSL   78 (80)
T ss_dssp             HHHTSCCTTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHCCCCCCCHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             8611486478213199999999999999999999999974167899984


No 8  
>>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} (A:1-41,A:394-489)
Probab=57.57  E-value=6.8  Score=18.41  Aligned_cols=20  Identities=30%  Similarity=0.453  Sum_probs=16.8

Q ss_pred             CEEEEECCCCCEEEEEEEEE
Q ss_conf             52653148985778752122
Q gi|254780378|r  102 GWFQVETPDKTVMYTRAGSF  121 (262)
Q Consensus       102 Gff~V~~~~G~~~yTR~G~f  121 (262)
                      |..++.+..||+.|.|+|=-
T Consensus        24 ~~~~~~~~~~~~~~~~~~Lr   43 (137)
T 1w79_A           24 GVVVVDTATGEELYSRDGLA   43 (137)
T ss_dssp             EEEEEETTTCCEEEEESTGT
T ss_pred             EEEEEECCCCCEEEEECCHH
T ss_conf             99999899999977718955


No 9  
>>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} (A:117-132,A:286-314)
Probab=40.08  E-value=12  Score=16.85  Aligned_cols=28  Identities=18%  Similarity=0.347  Sum_probs=19.9

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             65322101331255215886543222110
Q gi|254780378|r  146 ETREIKVSRSGQILAVTGKNSDFQPVGQL  174 (262)
Q Consensus       146 ~~~~i~i~~dG~I~~~~~~~~~~~~i~~i  174 (262)
                      +...+.|..||+|...+ .|+..+.+|||
T Consensus        18 elt~yqIn~DGtvvG~Y-SN~qtQlLGQI   45 (45)
T 3a69_A           18 DLVSYQINNDGTVVGNY-SNEQEQVLGQI   45 (45)
T ss_dssp             CEEEEEECTTCEEEEEE-TTSCEEEEEEE
T ss_pred             CCCCCCCCCCCEEEEEE-CCCCCHHHCCC
T ss_conf             22334457775389850-55421011013


No 10 
>>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus} (B:)
Probab=39.60  E-value=16  Score=16.20  Aligned_cols=38  Identities=24%  Similarity=0.388  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             23499999999999999999999999999999998715
Q gi|254780378|r  224 NVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM  261 (262)
Q Consensus       224 NVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l  261 (262)
                      .+|.++||+++...|=..|+..-++..+.++-+.+.+|
T Consensus        16 DaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~pq~vL~L   53 (55)
T 1ory_B           16 NVDFAKEMTEFTKYQIRMQSGVAMLAQANALPQLVLQL   53 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             05599999999999999999999999985267899975


No 11 
>>3d8x_A Thioredoxin reductase 1; NADPH, yeast, , modpipe model of A6Z, cytoplasm, FAD, flavoprotein, NADP, oxidoreductase, redox- active center; HET: FAD NAP; 2.80A {Saccharomyces cerevisiae} (A:127-138,A:256-283)
Probab=36.72  E-value=10  Score=17.27  Aligned_cols=17  Identities=35%  Similarity=0.587  Sum_probs=11.8

Q ss_pred             EEEEEECCCCCCCCCCC
Q ss_conf             21223525883414667
Q gi|254780378|r  118 AGSFNIDSKGQLVTADG  134 (262)
Q Consensus       118 ~G~f~~d~~G~Lvt~~G  134 (262)
                      .|.+.+|++||+++..|
T Consensus        22 kGQLelDe~GYI~t~pg   38 (40)
T 3d8x_A           22 AGQVDTDEAGYIKTVPG   38 (40)
T ss_dssp             TTTSCBCTTSCBCCCTT
T ss_pred             HCCCEECCCCCEEECCC
T ss_conf             36526748998896899


No 12 
>>1lln_A Antiviral protein 3; ribosome inactivating protein, polynucleotide:adenosine, hydrolase; HET: MLY; 1.60A {Phytolacca americana} (A:192-248)
Probab=35.48  E-value=22  Score=15.28  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             999999659997754217773400
Q gi|254780378|r   11 MSAQQTNLEIIANNIANINTTGYK   34 (262)
Q Consensus        11 m~a~~~~l~~isnNlAN~nT~GfK   34 (262)
                      ...++..-|.+|+-||-++|||--
T Consensus         8 aisle~~wd~~s~~iakv~t~g~s   31 (57)
T 1lln_A            8 AISLEKNWDSVSXVIAKVGTSGDS   31 (57)
T ss_dssp             HHHHHTTHHHHHHHHHHCCCCSSC
T ss_pred             HHHHHHCHHHHHHHHHHHHCCCCC
T ss_conf             877763698880999986526997


No 13 
>>1nig_A Hypothetical protein TA1238; structural genomics, four helixbundle, PSI, protein structure initiative; 2.00A {Thermoplasma acidophilum} (A:18-152)
Probab=34.69  E-value=24  Score=15.10  Aligned_cols=19  Identities=26%  Similarity=0.372  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             0010234999999999999
Q gi|254780378|r  220 LEASNVDAVKEISEMISAQ  238 (262)
Q Consensus       220 LE~SNVd~~~Emv~lI~~q  238 (262)
                      -|+++|+-++||.+++++-
T Consensus        22 SEg~kV~e~re~lDilDtl   40 (135)
T 1nig_A           22 SEGIKVRETREILDIIDTV   40 (135)
T ss_dssp             HTCSSHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHH
T ss_conf             7225738999999999999


No 14 
>>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, LP_2219,NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} (A:89-185)
Probab=33.50  E-value=25  Score=14.93  Aligned_cols=82  Identities=12%  Similarity=0.085  Sum_probs=42.7

Q ss_pred             EEECCCC-EEEE-ECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf             2323775-2653-148985778752122352588341466761044310135----653221013312552158865432
Q gi|254780378|r   96 LALVGRG-WFQV-ETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPE----ETREIKVSRSGQILAVTGKNSDFQ  169 (262)
Q Consensus        96 ~Ai~G~G-ff~V-~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~----~~~~i~i~~dG~I~~~~~~~~~~~  169 (262)
                      ++++-+| |+.+ .-.+|.+     .-|.++++|.|.-......-+....+.    -...+.++++|..++..-      
T Consensus         3 i~~~~~~~~l~~any~~gsi-----~v~~i~~~G~l~~~~~~~~~g~g~~~rq~~pH~H~v~~~p~g~~~v~dl------   71 (97)
T 3hfq_A            3 VAVDEARQLVYSANYHKGTA-----EVXKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL------   71 (97)
T ss_dssp             EEEETTTTEEEEEETTTTEE-----EEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET------
T ss_pred             EEECCCCCEEEEEECCCCCE-----EEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEEECC------
T ss_conf             99969999789875279937-----5502368983355555302587641134699841798045426999658------


Q ss_pred             CCCCCCEEECCCCCCCCCC
Q ss_conf             2211000002662001006
Q gi|254780378|r  170 PVGQLLIANFINEAGLRNI  188 (262)
Q Consensus       170 ~i~~i~l~~f~n~~~L~~~  188 (262)
                      -.++|.++.+.....|...
T Consensus        72 G~D~I~~f~~~~~g~L~~~   90 (97)
T 3hfq_A           72 GSDKVYVYNVSDAGQLSEQ   90 (97)
T ss_dssp             TTTEEEEEEECTTSCEEEE
T ss_pred             CCCCEEEEEECCCCCEEEC
T ss_conf             9983678986366404651


No 15 
>>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} (A:1-84,A:278-343)
Probab=33.15  E-value=29  Score=14.56  Aligned_cols=70  Identities=26%  Similarity=0.461  Sum_probs=37.5

Q ss_pred             CCCCCEEEEEE------EEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECC
Q ss_conf             48985778752------122352-58834146676104431013565322101331255215886543222110000026
Q gi|254780378|r  108 TPDKTVMYTRA------GSFNID-SKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFI  180 (262)
Q Consensus       108 ~~~G~~~yTR~------G~f~~d-~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~~~~~~~~~~~i~~i~l~~f~  180 (262)
                      .|+|..+|.=+      -.|.+| .+|.|.-.      +...++..-..|.|+++|.-...-.+..     ..|.++.+.
T Consensus        46 spdg~~LYv~nrg~~sI~ty~Id~~tG~L~~~------~~~~~~g~Pr~f~i~~~g~~l~v~~q~S-----~~i~v~~~d  114 (150)
T 1ri6_A           46 SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA------AESALPGQPRGFNVDHSGKYLIAAGQKS-----HHISVYEIV  114 (150)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCCEEEE------EEEECSSSCCCEEECTTSSEEEEECTTT-----CEEEEEEEE
T ss_pred             ECCCCEEEEEECCCCEEEEEEEECCCCEEEEE------CCCCCCCCEEEEEECCCCCEEEEEECCC-----CEEEEEEEE
T ss_conf             38989999998689969999997999708883------1102599653899938989999998899-----929999997


Q ss_pred             CC-CCCCCC
Q ss_conf             62-001006
Q gi|254780378|r  181 NE-AGLRNI  188 (262)
Q Consensus       181 n~-~~L~~~  188 (262)
                      .. ..|...
T Consensus       115 ~~tG~L~~~  123 (150)
T 1ri6_A          115 GEQGLLHEK  123 (150)
T ss_dssp             TTTTEEEEE
T ss_pred             CCCCCEEEE
T ss_conf             999957998


No 16 
>>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, LP_2219,NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} (A:186-286)
Probab=32.82  E-value=29  Score=14.52  Aligned_cols=86  Identities=15%  Similarity=0.149  Sum_probs=42.0

Q ss_pred             CEEEEEECCCC--EEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCE-EEECCCCCC
Q ss_conf             21212323775--265314898577875212235258834146676104431013--5653221013312-552158865
Q gi|254780378|r   92 NNLDLALVGRG--WFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIP--EETREIKVSRSGQ-ILAVTGKNS  166 (262)
Q Consensus        92 ~~lD~Ai~G~G--ff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p--~~~~~i~i~~dG~-I~~~~~~~~  166 (262)
                      .|..+|++-+|  +|+....++.+.     .|.++.++.+.+..+..-.....++  .....+.+++||. +++....  
T Consensus         3 ~P~~i~~spdg~~lyv~~~~~~~v~-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~spdg~~lyv~~~~--   75 (101)
T 3hfq_A            3 GPRHLVFSPDGQYAFLAGELSSQIA-----SLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG--   75 (101)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEE-----EEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET--
T ss_pred             CCCEEEEECCCCCEEEEECCCCEEE-----EEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECC--
T ss_conf             6647999514551257505653013-----577614678457876620001467888751678992798689976617--


Q ss_pred             CCCCCCCCCEEECCCCCCCCCC
Q ss_conf             4322211000002662001006
Q gi|254780378|r  167 DFQPVGQLLIANFINEAGLRNI  188 (262)
Q Consensus       167 ~~~~i~~i~l~~f~n~~~L~~~  188 (262)
                          -++|.+.+..++..|+.+
T Consensus        76 ----~~~I~v~d~~~~~~l~~i   93 (101)
T 3hfq_A           76 ----YNTLAVFAVTADGHLTLI   93 (101)
T ss_dssp             ----TTEEEEEEECGGGCEEEE
T ss_pred             ----CCEEEEEEECCCCCEEEE
T ss_conf             ----996999998999968999


No 17 
>>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} (A:233-368)
Probab=31.17  E-value=31  Score=14.36  Aligned_cols=26  Identities=27%  Similarity=0.530  Sum_probs=17.0

Q ss_pred             CCCCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             73326521212323775265314898
Q gi|254780378|r   86 EVVHTGNNLDLALVGRGWFQVETPDK  111 (262)
Q Consensus        86 ~l~~Tg~~lD~Ai~G~Gff~V~~~~G  111 (262)
                      .+.......|++|.|=||+.|.....
T Consensus        92 ~~~~~~~~~Divi~GlGwi~v~~~~~  117 (136)
T 3h2y_A           92 EFNIREPKTDVVFSGLGWVTVNEPGA  117 (136)
T ss_dssp             EEECCSSSEEEEETTTEEEEECSSCC
T ss_pred             EECCCCCCCEEEEECCCEEEEECCCC
T ss_conf             98268861108990787599838985


No 18 
>>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* (A:342-444)
Probab=30.70  E-value=32  Score=14.31  Aligned_cols=58  Identities=7%  Similarity=0.189  Sum_probs=35.0

Q ss_pred             ECCCCEEEEECCCCCEEEEEEE-EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCE
Q ss_conf             2377526531489857787521-223525883414667610443101356532210133125521588654322211000
Q gi|254780378|r   98 LVGRGWFQVETPDKTVMYTRAG-SFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLI  176 (262)
Q Consensus        98 i~G~Gff~V~~~~G~~~yTR~G-~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~~~~~~~~~~~i~~i~l  176 (262)
                      |+|+.++.+...+      ++| .+.|.++|..-+..|..          ...++|+.+|.++      ..++.++.|-+
T Consensus        13 IdGk~Yl~L~~~~------~~g~~YTvRe~G~Vyd~~gn~----------~T~Y~V~~~g~ly------k~g~~lgniyl   70 (103)
T 2jkb_A           13 INGHYYLKLKKNG------DNDFRYTVRENGVVYNETTNK----------PTNYTINDKYEVL------EGGKSLTVEQY   70 (103)
T ss_dssp             SSSSEEEEEEETT------CSSCCEEECGGGEEEETTTTE----------EEEEEECTTSBEE------ETTEECEEEEE
T ss_pred             ECCCCCEEEEECC------CCCCEEEECCCCEEEECCCCC----------CCEEEECCCCEEC------CCCCCCEECCC
T ss_conf             6898626788758------998779717998498536886----------4266505775351------57654010255


Q ss_pred             E
Q ss_conf             0
Q gi|254780378|r  177 A  177 (262)
Q Consensus       177 ~  177 (262)
                      .
T Consensus        71 ~   71 (103)
T 2jkb_A           71 S   71 (103)
T ss_dssp             E
T ss_pred             C
T ss_conf             2


No 19 
>>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} (A:131-210)
Probab=29.22  E-value=22  Score=15.30  Aligned_cols=23  Identities=13%  Similarity=0.179  Sum_probs=18.5

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             21223525883414667610443
Q gi|254780378|r  118 AGSFNIDSKGQLVTADGNTLVPG  140 (262)
Q Consensus       118 ~G~f~~d~~G~Lvt~~G~~vl~~  140 (262)
                      ...++.+.+|.++|.+|++++|.
T Consensus        28 ~~~lR~~~~gp~vTDnGN~IiD~   50 (80)
T 1uj6_A           28 EPELRXDGDEFYFTDGGHLIADC   50 (80)
T ss_dssp             CEEECEETTEECCCTTSCEEEEE
T ss_pred             CEEEECCCCCEEEECCCCEEEEE
T ss_conf             64894179802894799889991


No 20 
>>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} (A:235-369)
Probab=28.47  E-value=35  Score=14.07  Aligned_cols=25  Identities=20%  Similarity=0.534  Sum_probs=17.9

Q ss_pred             CCCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             3326521212323775265314898
Q gi|254780378|r   87 VVHTGNNLDLALVGRGWFQVETPDK  111 (262)
Q Consensus        87 l~~Tg~~lD~Ai~G~Gff~V~~~~G  111 (262)
                      +..-....|++|.|=||+.|....-
T Consensus        92 ~~~~~~~~Di~i~GlGWi~i~~~~~  116 (135)
T 3ec1_A           92 LSVKERKTDIVFSGLGWVTCNDPGA  116 (135)
T ss_dssp             EECCSSSEEEEETTTEEEEESSSCC
T ss_pred             EECCCCCEEEEEECCCEEEEECCCC
T ss_conf             7047872029991786599978882


No 21 
>>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum} (A:1-61)
Probab=27.90  E-value=25  Score=14.92  Aligned_cols=14  Identities=29%  Similarity=0.608  Sum_probs=9.8

Q ss_pred             EEEECCCCCCCCCC
Q ss_conf             22352588341466
Q gi|254780378|r  120 SFNIDSKGQLVTAD  133 (262)
Q Consensus       120 ~f~~d~~G~Lvt~~  133 (262)
                      .+.+|++|||++.+
T Consensus        31 ~IEtDedGYL~n~~   44 (61)
T 1yx3_A           31 QFAVDEEGYLSNLN   44 (61)
T ss_dssp             EEEEETTTEECCTT
T ss_pred             EEEECCCCCCCCHH
T ss_conf             98508876657911


No 22 
>>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative; 2.09A {Plasmodium falciparum 3D7} (A:140-223)
Probab=27.49  E-value=26  Score=14.81  Aligned_cols=23  Identities=13%  Similarity=0.050  Sum_probs=17.9

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             21223525883414667610443
Q gi|254780378|r  118 AGSFNIDSKGQLVTADGNTLVPG  140 (262)
Q Consensus       118 ~G~f~~d~~G~Lvt~~G~~vl~~  140 (262)
                      ...++.+.+|.++|.+|++++|.
T Consensus        31 ~~~lR~~~~gp~iTDnGN~IiD~   53 (84)
T 2f8m_A           31 TYKIRKRNGEIFITDNKNYIVDF   53 (84)
T ss_dssp             EEEECEETTEECCCTTSCEEEEE
T ss_pred             CEEEEECCCCCEEECCCCEEEEC
T ss_conf             63678649964284699889983


No 23 
>>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* (A:138-218,A:380-432)
Probab=27.47  E-value=31  Score=14.38  Aligned_cols=27  Identities=26%  Similarity=0.384  Sum_probs=20.3

Q ss_pred             CCCEEEEECCCCCEEEEEEEEEEECCCCC
Q ss_conf             77526531489857787521223525883
Q gi|254780378|r  100 GRGWFQVETPDKTVMYTRAGSFNIDSKGQ  128 (262)
Q Consensus       100 G~Gff~V~~~~G~~~yTR~G~f~~d~~G~  128 (262)
                      |.--|.+.+++|.+.||  |+|++|....
T Consensus        24 ga~g~~I~T~~G~IvyT--GDfk~d~~p~   50 (134)
T 3bk2_A           24 DNSGVVIRTPIGTIVHT--GDFKLDPTPI   50 (134)
T ss_dssp             SCEEEEEEETTEEEEEC--CSCCCCSSCT
T ss_pred             CCCEEEEEECCEEEEEE--CCCCCCCCCC
T ss_conf             54122898088579996--6623566766


No 24 
>>1cru_A Protein (soluble quinoprotein glucose dehydrogenase); beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} (A:1-72,A:337-454)
Probab=23.46  E-value=43  Score=13.51  Aligned_cols=13  Identities=8%  Similarity=-0.184  Sum_probs=7.0

Q ss_pred             CCEEEEEECCCCE
Q ss_conf             5212123237752
Q gi|254780378|r   91 GNNLDLALVGRGW  103 (262)
Q Consensus        91 g~~lD~Ai~G~Gf  103 (262)
                      .+|..+|+.-+|=
T Consensus        27 ~~P~~ia~~pdG~   39 (190)
T 1cru_A           27 NKPHALLWGPDNQ   39 (190)
T ss_dssp             SSEEEEEECTTSC
T ss_pred             CCCEEEEEECCCE
T ss_conf             9843899918990


No 25 
>>2bf6_A Sialidase, EXO-alpha-sialidase; sialic acid, hydrolase; HET: SIA; 0.97A {Clostridium perfringens} PDB: 2vk5_A 2vk6_A* 2vk7_A* (A:114-180)
Probab=22.94  E-value=44  Score=13.45  Aligned_cols=56  Identities=11%  Similarity=0.221  Sum_probs=32.4

Q ss_pred             ECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEE
Q ss_conf             23775265314898577875212235258834146676104431013565322101331255215886543222110000
Q gi|254780378|r   98 LVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIA  177 (262)
Q Consensus        98 i~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~~~~~~~~~~~i~~i~l~  177 (262)
                      |+|++++.+-..++. .||=+       ||...+.+|.+           .+++|+.+|.++      ..++.+|.|-+.
T Consensus        10 Idgk~Yl~L~~~~~~-~YTiR-------EG~V~d~~g~~-----------T~Y~V~~~g~l~------k~g~~lGNIyl~   64 (67)
T 2bf6_A           10 IDGKEYLCLYDSSGK-EFTVR-------ENVVYDKDSNK-----------TEYTTNALGDLF------KNGTKIDNINSS   64 (67)
T ss_dssp             ETTEEEEEEECTTCC-EEEEE-------TTEEECTTSCE-----------EEEEECTTCEEE------ETTEEEEETTSS
T ss_pred             CCCCEEEEEEECCCC-EEEEE-------CCEEEECCCCC-----------CEEECCCCCCCC------CCCCEECCCCCC
T ss_conf             489367999966897-58863-------67588657884-----------202024655323------467031120254


Q ss_pred             E
Q ss_conf             0
Q gi|254780378|r  178 N  178 (262)
Q Consensus       178 ~  178 (262)
                      .
T Consensus        65 ~   65 (67)
T 2bf6_A           65 T   65 (67)
T ss_dssp             S
T ss_pred             C
T ss_conf             2


No 26 
>>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1} (A:1-80)
Probab=22.75  E-value=38  Score=13.83  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=23.7

Q ss_pred             EEEE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             5212-235258834146676104431013565322101331255
Q gi|254780378|r  117 RAGS-FNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQIL  159 (262)
Q Consensus       117 R~G~-f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~  159 (262)
                      ..|+ |-++++|+++|.. |.|       .+...+.|..||.-+
T Consensus        19 ~~GSGfii~~~G~IlTn~-HVV-------~~~~~i~V~~~g~~~   54 (80)
T 2w5e_A           19 PEGKGTGFFSGNDIVTAA-HVV-------GNNTFVNVCYEGLMY   54 (80)
T ss_dssp             TTEEEEEEEETTEEEEEH-HHH-------TTCSEEEEEETTEEE
T ss_pred             CCCCEEEEEECCEEEECC-HHH-------CCCCEEEEEEEEEEE
T ss_conf             996299999899999881-570-------888378886200110


No 27 
>>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, protein structure initiative; 1.90A {Bacteroides uniformis atcc 8492} (A:1-83,A:268-328)
Probab=22.40  E-value=45  Score=13.38  Aligned_cols=57  Identities=9%  Similarity=0.027  Sum_probs=23.4

Q ss_pred             CCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEECC
Q ss_conf             52121232377526531489857787521223525883414667610443101356532210133-1255215
Q gi|254780378|r   91 GNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRS-GQILAVT  162 (262)
Q Consensus        91 g~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~d-G~I~~~~  162 (262)
                      -.+.|++..|+-.|+....++.+.              .++.....++..+....+ ..|.|+++ |.|++..
T Consensus        44 ~~~~~~~~~g~~lyV~~~~~~~V~--------------ViD~~t~~~~~~i~~~~P-~~iavdp~~g~iyVtd  101 (144)
T 3dsm_A           44 DVAQSXVIRDGIGWIVVNNSHVIF--------------AIDINTFKEVGRITGFKY-YGLTVNPNNGEVYVAD  101 (144)
T ss_dssp             SCEEEEEEETTEEEEEEGGGTEEE--------------EEETTTCCEEEEEECCCE-EEEEECTTTCCEEEEE
T ss_pred             CCCCEEEEECCEEEEEECCCCEEE--------------EEECCCCCEEEEEECCCE-EEEEEECCCCEEEEEE
T ss_conf             751079996999999993899899--------------998998918899964888-9999957999999997


No 28 
>>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} (A:1-19,A:215-397)
Probab=20.89  E-value=49  Score=13.19  Aligned_cols=39  Identities=10%  Similarity=0.169  Sum_probs=22.5

Q ss_pred             CCCCEEEEECCCCCE---EEEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             377526531489857---7875212235258834146676104
Q gi|254780378|r   99 VGRGWFQVETPDKTV---MYTRAGSFNIDSKGQLVTADGNTLV  138 (262)
Q Consensus        99 ~G~Gff~V~~~~G~~---~yTR~G~f~~d~~G~Lvt~~G~~vl  138 (262)
                      +|+|+|.+..|-++.   .|-| =+=.|...-..|-+.|||+.
T Consensus        73 ~G~G~~Em~cPh~~~~~rsY~~-~ra~l~~g~v~VvPaghP~~  114 (202)
T 2phl_A           73 EGEAHVELVGPKGNKETLEYES-YRAELSKDDVFVIPAAYPVA  114 (202)
T ss_dssp             ESEEEEEEEEECC--CCSCEEE-EEEEEETTCEEEECTTCCEE
T ss_pred             CCEEEEEEEECCCCCCCCCCEE-EEEEECCCCEEEECCCCEEE
T ss_conf             1617899981799733212022-31258598689999999288


No 29 
>>3fgb_A Uncharacterized protein Q89ZH8_bactn; BTR289B, NESG, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} (A:43-140)
Probab=20.18  E-value=51  Score=13.10  Aligned_cols=38  Identities=8%  Similarity=0.110  Sum_probs=20.5

Q ss_pred             CCCCCCCCCCCE-EEECCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             653221013312-55215886543222110000026620010068
Q gi|254780378|r  146 ETREIKVSRSGQ-ILAVTGKNSDFQPVGQLLIANFINEAGLRNIG  189 (262)
Q Consensus       146 ~~~~i~i~~dG~-I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g  189 (262)
                      ....+.++.||. +++....      -+.|.+++......+.++-
T Consensus        49 g~~~~~is~dg~~l~van~~------~~~v~v~~~~~~~~i~~i~   87 (98)
T 3fgb_A           49 GEDPCYIITNGSNVVTANYS------GGSISVFPIDKDGSLLPAS   87 (98)
T ss_dssp             SSCEEEEEECSSEEEEEETT------TTEEEEEEBCTTSCBCSCC
T ss_pred             CCCCEEEECCCCEEEEEECC------CCEEEEEEECCCCCEEEEE
T ss_conf             99858997289957997658------9879999804678413667


Done!