Query gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter asiaticus str. psy62] Match_columns 262 No_of_seqs 139 out of 2802 Neff 7.2 Searched_HMMs 33803 Date Wed Jun 1 12:52:37 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780378.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3a69_A Flagellar HOOK protein 100.0 4.3E-29 1.3E-33 195.9 7.0 113 70-218 1-113 (113) 2 >1wlg_A Flagellar HOOK protein 99.8 1.3E-21 3.9E-26 150.4 7.0 81 93-209 1-81 (83) 3 >1wlg_A Flagellar HOOK protein 94.6 0.011 3.4E-07 35.3 1.1 51 141-229 9-59 (59) 4 >2p4o_A Hypothetical protein; 80.9 3.5 0.0001 20.1 5.0 99 91-200 2-119 (143) 5 >1q7f_A NHL, brain tumor CG107 79.5 3.1 9.2E-05 20.5 4.4 57 91-162 59-119 (143) 6 >2z2n_A Virginiamycin B lyase; 73.1 5.9 0.00017 18.8 4.5 60 92-165 3-64 (84) 7 >1ucu_A Phase 1 flagellin; fla 71.1 5.1 0.00015 19.2 3.7 48 214-261 30-78 (80) 8 >1w79_A D-alanyl-D-alanine car 57.6 6.8 0.0002 18.4 2.2 20 102-121 24-43 (137) 9 >3a69_A Flagellar HOOK protein 40.1 12 0.00036 16.9 1.3 28 146-174 18-45 (45) 10 >1ory_B Flagellin; flagellar c 39.6 16 0.00046 16.2 1.7 38 224-261 16-53 (55) 11 >3d8x_A Thioredoxin reductase 36.7 10 0.00031 17.3 0.5 17 118-134 22-38 (40) 12 >1lln_A Antiviral protein 3; r 35.5 22 0.00066 15.3 2.0 24 11-34 8-31 (57) 13 >1nig_A Hypothetical protein T 34.7 24 0.0007 15.1 2.0 19 220-238 22-40 (135) 14 >3hfq_A Uncharacterized protei 33.5 25 0.00075 14.9 2.0 82 96-188 3-90 (97) 15 >1ri6_A Putative isomerase YBH 33.2 29 0.00086 14.6 5.8 70 108-188 46-123 (150) 16 >3hfq_A Uncharacterized protei 32.8 29 0.00087 14.5 5.2 86 92-188 3-93 (101) 17 >3h2y_A GTPase family protein; 31.2 31 0.00093 14.4 2.7 26 86-111 92-117 (136) 18 >2jkb_A Sialidase B; intramole 30.7 32 0.00095 14.3 3.5 58 98-177 13-71 (103) 19 >1uj6_A Ribose 5-phosphate iso 29.2 22 0.00065 15.3 1.1 23 118-140 28-50 (80) 20 >3ec1_A YQEH GTPase; atnos1, a 28.5 35 0.001 14.1 3.0 25 87-111 92-116 (135) 21 >1yx3_A Hypothetical protein D 27.9 25 0.00075 14.9 1.2 14 120-133 31-44 (61) 22 >2f8m_A Ribose 5-phosphate iso 27.5 26 0.00078 14.8 1.3 23 118-140 31-53 (84) 23 >3bk2_A RNAse J, metal depende 27.5 31 0.00092 14.4 1.6 27 100-128 24-50 (134) 24 >1cru_A Protein (soluble quino 23.5 43 0.0013 13.5 2.8 13 91-103 27-39 (190) 25 >2bf6_A Sialidase, EXO-alpha-s 22.9 44 0.0013 13.4 2.4 56 98-178 10-65 (67) 26 >2w5e_A Putative serine protea 22.7 38 0.0011 13.8 1.4 35 117-159 19-54 (80) 27 >3dsm_A Uncharacterized protei 22.4 45 0.0013 13.4 4.9 57 91-162 44-101 (144) 28 >2phl_A Phaseolin; plant SEED 20.9 49 0.0014 13.2 2.5 39 99-138 73-114 (202) 29 >3fgb_A Uncharacterized protei 20.2 51 0.0015 13.1 3.6 38 146-189 49-87 (98) No 1 >>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} (A:48-116,A:315-358) Probab=99.95 E-value=4.3e-29 Score=195.93 Aligned_cols=113 Identities=33% Similarity=0.647 Sum_probs=107.5 Q ss_pred CCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 44202112322335787332652121232377526531489857787521223525883414667610443101356532 Q gi|254780378|r 70 GSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETRE 149 (262) Q Consensus 70 g~gv~~~~~~~~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~ 149 (262) |.||++.+++++|+||+++.|++|||+||+|+|||.|++++|+++|||+|+|++|++|||||.+|++|| T Consensus 1 G~Gv~~~~~~~~~~qG~l~~T~~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~ld~~G~Lvt~~G~~vl----------- 69 (113) T 3a69_A 1 GLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLT----------- 69 (113) T ss_dssp -----------------------CEECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEE----------- T ss_pred CCCEEEEEEEEEECCCCEEECCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------- T ss_conf 676477679996045545762645566622786036751578600013454220478871235674002----------- Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC Q ss_conf 210133125521588654322211000002662001006886433466665520002467762068607 Q gi|254780378|r 150 IKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQG 218 (262) Q Consensus 150 i~i~~dG~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG 218 (262) +|++|+||+.|+++|++.|.++..+|+|.++.|+..++++|..| T Consensus 70 -------------------------al~~f~n~~gL~~~g~~~~~~t~~sG~~~~g~~g~~~~G~i~~G 113 (113) T 3a69_A 70 -------------------------VLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNG 113 (113) T ss_dssp -------------------------CEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCCC- T ss_pred -------------------------CCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEEC T ss_conf -------------------------34566786774413784476133567730167887872547107 No 2 >>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} (A:1-46,A:245-281) Probab=99.85 E-value=1.3e-21 Score=150.41 Aligned_cols=81 Identities=35% Similarity=0.655 Sum_probs=76.2 Q ss_pred EEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC Q ss_conf 12123237752653148985778752122352588341466761044310135653221013312552158865432221 Q gi|254780378|r 93 NLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVG 172 (262) Q Consensus 93 ~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~~~~~~~~~~~i~ 172 (262) .||+||+|+|||.|++++|+++|||+|+|++|++|+|||.+|++|| T Consensus 1 AlDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lv~~~G~~vl---------------------------------- 46 (83) T 1wlg_A 1 GLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLT---------------------------------- 46 (83) T ss_dssp CEECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEE---------------------------------- T ss_pred CCCEEECCCCEEEEECCCCCEEEECCCCEEECCCCCEECCCCCEEE---------------------------------- T ss_conf 9657875870799876999888844887239899988879999898---------------------------------- Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 1000002662001006886433466665520002467 Q gi|254780378|r 173 QLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDD 209 (262) Q Consensus 173 ~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~ 209 (262) .|++|.||+.|+++|+++|..+.+||.|..+.|+. T Consensus 47 --~la~F~N~~GL~~~G~n~~~~T~~SG~p~~g~pgt 81 (83) T 1wlg_A 47 --VLANFANNEGLASQGDNVWAATQASGVALLGTAGS 81 (83) T ss_dssp --CEEECSCGGGSEECSTTCEECCTTTCCCEEECTTB T ss_pred --EEEECCCHHHHHHCCCCEEECCCCCCCCEECCCCC T ss_conf --99960797881311597277644578744357998 No 3 >>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} (A:47-61,A:219-244,A:282-299) Probab=94.59 E-value=0.011 Score=35.27 Aligned_cols=51 Identities=31% Similarity=0.464 Sum_probs=32.7 Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCH Q ss_conf 10135653221013312552158865432221100000266200100688643346666552000246776206860730 Q gi|254780378|r 141 IVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYL 220 (262) Q Consensus 141 ~~~p~~~~~i~i~~dG~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~L 220 (262) ..|....-.+.|..||+|...+. ++..+.+||| ++++..|+| T Consensus 9 ptiqqgavsyqin~dgtvvgnys-neq~q~lgqi-------------------------------------fg~lt~gal 50 (59) T 1wlg_A 9 PTIQQGAVSYQINNDGTVVGNYS-NEQEQVLGQI-------------------------------------FGKLTNGAL 50 (59) T ss_dssp TBCCTTCEEEEECTTCEEEEEET-TSCEEEEEEE-------------------------------------BCCCSSCEE T ss_pred CCCCCCCEEEEECCCCEEEEEEC-CCCEEEEEEE-------------------------------------CEEEEECCE T ss_conf 62125770257447616999908-9837788899-------------------------------------234851744 Q ss_pred HHHHHHHHH Q ss_conf 010234999 Q gi|254780378|r 221 EASNVDAVK 229 (262) Q Consensus 221 E~SNVd~~~ 229 (262) |.||||+.+ T Consensus 51 e~snvdlsk 59 (59) T 1wlg_A 51 EASNVDLSK 59 (59) T ss_dssp EEC------ T ss_pred EHHHCCCCC T ss_conf 223326268 No 4 >>2p4o_A Hypothetical protein; ZP_00111901.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.90A {Nostoc punctiforme pcc 73102} (A:71-213) Probab=80.93 E-value=3.5 Score=20.14 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=45.5 Q ss_pred CCEEEEEECCCCEEEEE-CCCCCE-EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC Q ss_conf 52121232377526531-489857-7875212235258834146676104431013565322101331255215886543 Q gi|254780378|r 91 GNNLDLALVGRGWFQVE-TPDKTV-MYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDF 168 (262) Q Consensus 91 g~~lD~Ai~G~Gff~V~-~~~G~~-~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~~~~~~~~~ 168 (262) +.|.++|++.+|.+-|. ..++.+ .|.+++.... .....+.+...- ...+.++++|.+++....+... T Consensus 2 g~P~gia~d~~g~l~v~d~~~~~i~~~d~~~~~~~--------~~~~~~~~~~~~---p~~i~vd~~g~l~v~~~~~~~I 70 (143) T 2p4o_A 2 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT--------VETLLTLPDAIF---LNGITPLSDTQYLTADSYRGAI 70 (143) T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC--------EEEEEECTTCSC---EEEEEESSSSEEEEEETTTTEE T ss_pred CCCCEEEECCCCCEEEEECCCCEEEEECCCCCCCE--------EEEECCCCCCCC---CCCEEECCCCCEEEEECCCCEE T ss_conf 98534898889988998347843653025544310--------243012578653---3670098999787530245100 Q ss_pred -----------------CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf -----------------22211000002662001006886433466665 Q gi|254780378|r 169 -----------------QPVGQLLIANFINEAGLRNIGDNLLARTSVSG 200 (262) Q Consensus 169 -----------------~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g 200 (262) ..........+..|..+.-.++.+|.....++ T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~lyv~d~~~~ 119 (143) T 2p4o_A 71 WLIDVVQPSGSIWLEHPXLARSNSESVFPAANGLKRFGNFLYVSNTEKX 119 (143) T ss_dssp EEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTT T ss_pred EEEEECCCCEEEEECCCCCCEECCCCCCCCCCEEEECCCCEEEECCCCC T ss_conf 3564047723898405643112057777654255315980386116897 No 5 >>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} (A:1-14,A:120-248) Probab=79.54 E-value=3.1 Score=20.47 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=25.4 Q ss_pred CCEEEEEECCCC-EEEEECCCCCE-EEEEEEEEE--ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC Q ss_conf 521212323775-26531489857-787521223--5258834146676104431013565322101331255215 Q gi|254780378|r 91 GNNLDLALVGRG-WFQVETPDKTV-MYTRAGSFN--IDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVT 162 (262) Q Consensus 91 g~~lD~Ai~G~G-ff~V~~~~G~~-~yTR~G~f~--~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~~~ 162 (262) .-|.|+|+.-+| ||.....+..+ .|+++|.|- +-.++.+--+ ..|.++.+|.+.+.. T Consensus 59 ~~P~gvai~~~g~~~~~d~~~~~v~v~~~~G~~l~~~~~~~~~~~P---------------~gI~~~~~G~ilV~d 119 (143) T 1q7f_A 59 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYP---------------IGVGINSNGEILIAD 119 (143) T ss_dssp SSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSE---------------EEEEECTTCCEEEEE T ss_pred CCCCEEEEEECCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCC---------------CEEEECCCCCEEEEE T ss_conf 2101599960487999725741899993899879898888720575---------------255566889899997 No 6 >>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, enzyme mechanism, virginiamycin B hydrolase, streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* (A:182-265) Probab=73.11 E-value=5.9 Score=18.77 Aligned_cols=60 Identities=7% Similarity=-0.059 Sum_probs=31.6 Q ss_pred CEEEEEECCCCEEEEE-CCCCCEE-EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC Q ss_conf 2121232377526531-4898577-875212235258834146676104431013565322101331255215886 Q gi|254780378|r 92 NNLDLALVGRGWFQVE-TPDKTVM-YTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKN 165 (262) Q Consensus 92 ~~lD~Ai~G~Gff~V~-~~~G~~~-yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~~~~~~ 165 (262) .|..+|++.+|-+-|. ..+..+. |+.+|.+. ..-+..-+ ..-..+.++++|.|++....+ T Consensus 3 ~P~gia~d~~g~i~v~d~~~~~I~~~~~~g~~~--------~~~~~~~~------~~P~gia~d~~G~i~v~d~~~ 64 (84) T 2z2n_A 3 GPVGITKGNDDALWFVEIIGNKIGRITTSGEIT--------EFKIPTPN------ARPHAITAGAGIDLWFTEWGA 64 (84) T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECTTCCEE--------EEECSSTT------CCEEEEEECSTTCEEEEETTT T ss_pred CEEEEEECCCCCEEEEECCCCEEEEEECCCCEE--------EEEEECCC------CCEEEEEECCCCCEEEEEECC T ss_conf 013578806885899865799999990766236--------76321157------712679999998199998159 No 7 >>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} (A:1-40,A:455-494) Probab=71.09 E-value=5.1 Score=19.18 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=39.7 Q ss_pred EEEECCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 6860730010-23499999999999999999999999999999998715 Q gi|254780378|r 214 HVKQGYLEAS-NVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262) Q Consensus 214 ~v~qG~LE~S-NVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262) ++-+|+.=.| .+|.++||+++...|=-.|+..-|+..+.++-+.+.+| T Consensus 30 rLSSG~RINsADaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~pq~vl~L 78 (80) T 1ucu_A 30 RLSSGLRINSADSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSL 78 (80) T ss_dssp HHHTSCCTTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHCCCCCCCHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 8611486478213199999999999999999999999974167899984 No 8 >>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} (A:1-41,A:394-489) Probab=57.57 E-value=6.8 Score=18.41 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.8 Q ss_pred CEEEEECCCCCEEEEEEEEE Q ss_conf 52653148985778752122 Q gi|254780378|r 102 GWFQVETPDKTVMYTRAGSF 121 (262) Q Consensus 102 Gff~V~~~~G~~~yTR~G~f 121 (262) |..++.+..||+.|.|+|=- T Consensus 24 ~~~~~~~~~~~~~~~~~~Lr 43 (137) T 1w79_A 24 GVVVVDTATGEELYSRDGLA 43 (137) T ss_dssp EEEEEETTTCCEEEEESTGT T ss_pred EEEEEECCCCCEEEEECCHH T ss_conf 99999899999977718955 No 9 >>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} (A:117-132,A:286-314) Probab=40.08 E-value=12 Score=16.85 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=19.9 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 65322101331255215886543222110 Q gi|254780378|r 146 ETREIKVSRSGQILAVTGKNSDFQPVGQL 174 (262) Q Consensus 146 ~~~~i~i~~dG~I~~~~~~~~~~~~i~~i 174 (262) +...+.|..||+|...+ .|+..+.+||| T Consensus 18 elt~yqIn~DGtvvG~Y-SN~qtQlLGQI 45 (45) T 3a69_A 18 DLVSYQINNDGTVVGNY-SNEQEQVLGQI 45 (45) T ss_dssp CEEEEEECTTCEEEEEE-TTSCEEEEEEE T ss_pred CCCCCCCCCCCEEEEEE-CCCCCHHHCCC T ss_conf 22334457775389850-55421011013 No 10 >>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus} (B:) Probab=39.60 E-value=16 Score=16.20 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 23499999999999999999999999999999998715 Q gi|254780378|r 224 NVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKM 261 (262) Q Consensus 224 NVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~l 261 (262) .+|.++||+++...|=..|+..-++..+.++-+.+.+| T Consensus 16 DaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~pq~vL~L 53 (55) T 1ory_B 16 NVDFAKEMTEFTKYQIRMQSGVAMLAQANALPQLVLQL 53 (55) T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 05599999999999999999999999985267899975 No 11 >>3d8x_A Thioredoxin reductase 1; NADPH, yeast, , modpipe model of A6Z, cytoplasm, FAD, flavoprotein, NADP, oxidoreductase, redox- active center; HET: FAD NAP; 2.80A {Saccharomyces cerevisiae} (A:127-138,A:256-283) Probab=36.72 E-value=10 Score=17.27 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=11.8 Q ss_pred EEEEEECCCCCCCCCCC Q ss_conf 21223525883414667 Q gi|254780378|r 118 AGSFNIDSKGQLVTADG 134 (262) Q Consensus 118 ~G~f~~d~~G~Lvt~~G 134 (262) .|.+.+|++||+++..| T Consensus 22 kGQLelDe~GYI~t~pg 38 (40) T 3d8x_A 22 AGQVDTDEAGYIKTVPG 38 (40) T ss_dssp TTTSCBCTTSCBCCCTT T ss_pred HCCCEECCCCCEEECCC T ss_conf 36526748998896899 No 12 >>1lln_A Antiviral protein 3; ribosome inactivating protein, polynucleotide:adenosine, hydrolase; HET: MLY; 1.60A {Phytolacca americana} (A:192-248) Probab=35.48 E-value=22 Score=15.28 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.6 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 999999659997754217773400 Q gi|254780378|r 11 MSAQQTNLEIIANNIANINTTGYK 34 (262) Q Consensus 11 m~a~~~~l~~isnNlAN~nT~GfK 34 (262) ...++..-|.+|+-||-++|||-- T Consensus 8 aisle~~wd~~s~~iakv~t~g~s 31 (57) T 1lln_A 8 AISLEKNWDSVSXVIAKVGTSGDS 31 (57) T ss_dssp HHHHHTTHHHHHHHHHHCCCCSSC T ss_pred HHHHHHCHHHHHHHHHHHHCCCCC T ss_conf 877763698880999986526997 No 13 >>1nig_A Hypothetical protein TA1238; structural genomics, four helixbundle, PSI, protein structure initiative; 2.00A {Thermoplasma acidophilum} (A:18-152) Probab=34.69 E-value=24 Score=15.10 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 0010234999999999999 Q gi|254780378|r 220 LEASNVDAVKEISEMISAQ 238 (262) Q Consensus 220 LE~SNVd~~~Emv~lI~~q 238 (262) -|+++|+-++||.+++++- T Consensus 22 SEg~kV~e~re~lDilDtl 40 (135) T 1nig_A 22 SEGIKVRETREILDIIDTV 40 (135) T ss_dssp HTCSSHHHHHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHHHHHH T ss_conf 7225738999999999999 No 14 >>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, LP_2219,NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} (A:89-185) Probab=33.50 E-value=25 Score=14.93 Aligned_cols=82 Identities=12% Similarity=0.085 Sum_probs=42.7 Q ss_pred EEECCCC-EEEE-ECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEECCCCCCCCC Q ss_conf 2323775-2653-148985778752122352588341466761044310135----653221013312552158865432 Q gi|254780378|r 96 LALVGRG-WFQV-ETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPE----ETREIKVSRSGQILAVTGKNSDFQ 169 (262) Q Consensus 96 ~Ai~G~G-ff~V-~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~----~~~~i~i~~dG~I~~~~~~~~~~~ 169 (262) ++++-+| |+.+ .-.+|.+ .-|.++++|.|.-......-+....+. -...+.++++|..++..- T Consensus 3 i~~~~~~~~l~~any~~gsi-----~v~~i~~~G~l~~~~~~~~~g~g~~~rq~~pH~H~v~~~p~g~~~v~dl------ 71 (97) T 3hfq_A 3 VAVDEARQLVYSANYHKGTA-----EVXKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL------ 71 (97) T ss_dssp EEEETTTTEEEEEETTTTEE-----EEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET------ T ss_pred EEECCCCCEEEEEECCCCCE-----EEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEEECC------ T ss_conf 99969999789875279937-----5502368983355555302587641134699841798045426999658------ Q ss_pred CCCCCCEEECCCCCCCCCC Q ss_conf 2211000002662001006 Q gi|254780378|r 170 PVGQLLIANFINEAGLRNI 188 (262) Q Consensus 170 ~i~~i~l~~f~n~~~L~~~ 188 (262) -.++|.++.+.....|... T Consensus 72 G~D~I~~f~~~~~g~L~~~ 90 (97) T 3hfq_A 72 GSDKVYVYNVSDAGQLSEQ 90 (97) T ss_dssp TTTEEEEEEECTTSCEEEE T ss_pred CCCCEEEEEECCCCCEEEC T ss_conf 9983678986366404651 No 15 >>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} (A:1-84,A:278-343) Probab=33.15 E-value=29 Score=14.56 Aligned_cols=70 Identities=26% Similarity=0.461 Sum_probs=37.5 Q ss_pred CCCCCEEEEEE------EEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECC Q ss_conf 48985778752------122352-58834146676104431013565322101331255215886543222110000026 Q gi|254780378|r 108 TPDKTVMYTRA------GSFNID-SKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFI 180 (262) Q Consensus 108 ~~~G~~~yTR~------G~f~~d-~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~~~~~~~~~~~i~~i~l~~f~ 180 (262) .|+|..+|.=+ -.|.+| .+|.|.-. +...++..-..|.|+++|.-...-.+.. ..|.++.+. T Consensus 46 spdg~~LYv~nrg~~sI~ty~Id~~tG~L~~~------~~~~~~g~Pr~f~i~~~g~~l~v~~q~S-----~~i~v~~~d 114 (150) T 1ri6_A 46 SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA------AESALPGQPRGFNVDHSGKYLIAAGQKS-----HHISVYEIV 114 (150) T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEEEE------EEEECSSSCCCEEECTTSSEEEEECTTT-----CEEEEEEEE T ss_pred ECCCCEEEEEECCCCEEEEEEEECCCCEEEEE------CCCCCCCCEEEEEECCCCCEEEEEECCC-----CEEEEEEEE T ss_conf 38989999998689969999997999708883------1102599653899938989999998899-----929999997 Q ss_pred CC-CCCCCC Q ss_conf 62-001006 Q gi|254780378|r 181 NE-AGLRNI 188 (262) Q Consensus 181 n~-~~L~~~ 188 (262) .. ..|... T Consensus 115 ~~tG~L~~~ 123 (150) T 1ri6_A 115 GEQGLLHEK 123 (150) T ss_dssp TTTTEEEEE T ss_pred CCCCCEEEE T ss_conf 999957998 No 16 >>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, LP_2219,NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} (A:186-286) Probab=32.82 E-value=29 Score=14.52 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=42.0 Q ss_pred CEEEEEECCCC--EEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCE-EEECCCCCC Q ss_conf 21212323775--265314898577875212235258834146676104431013--5653221013312-552158865 Q gi|254780378|r 92 NNLDLALVGRG--WFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIP--EETREIKVSRSGQ-ILAVTGKNS 166 (262) Q Consensus 92 ~~lD~Ai~G~G--ff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p--~~~~~i~i~~dG~-I~~~~~~~~ 166 (262) .|..+|++-+| +|+....++.+. .|.++.++.+.+..+..-.....++ .....+.+++||. +++.... T Consensus 3 ~P~~i~~spdg~~lyv~~~~~~~v~-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~spdg~~lyv~~~~-- 75 (101) T 3hfq_A 3 GPRHLVFSPDGQYAFLAGELSSQIA-----SLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG-- 75 (101) T ss_dssp CEEEEEECTTSSEEEEEETTTTEEE-----EEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET-- T ss_pred CCCEEEEECCCCCEEEEECCCCEEE-----EEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECC-- T ss_conf 6647999514551257505653013-----577614678457876620001467888751678992798689976617-- Q ss_pred CCCCCCCCCEEECCCCCCCCCC Q ss_conf 4322211000002662001006 Q gi|254780378|r 167 DFQPVGQLLIANFINEAGLRNI 188 (262) Q Consensus 167 ~~~~i~~i~l~~f~n~~~L~~~ 188 (262) -++|.+.+..++..|+.+ T Consensus 76 ----~~~I~v~d~~~~~~l~~i 93 (101) T 3hfq_A 76 ----YNTLAVFAVTADGHLTLI 93 (101) T ss_dssp ----TTEEEEEEECGGGCEEEE T ss_pred ----CCEEEEEEECCCCCEEEE T ss_conf ----996999998999968999 No 17 >>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} (A:233-368) Probab=31.17 E-value=31 Score=14.36 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=17.0 Q ss_pred CCCCCCCEEEEEECCCCEEEEECCCC Q ss_conf 73326521212323775265314898 Q gi|254780378|r 86 EVVHTGNNLDLALVGRGWFQVETPDK 111 (262) Q Consensus 86 ~l~~Tg~~lD~Ai~G~Gff~V~~~~G 111 (262) .+.......|++|.|=||+.|..... T Consensus 92 ~~~~~~~~~Divi~GlGwi~v~~~~~ 117 (136) T 3h2y_A 92 EFNIREPKTDVVFSGLGWVTVNEPGA 117 (136) T ss_dssp EEECCSSSEEEEETTTEEEEECSSCC T ss_pred EECCCCCCCEEEEECCCEEEEECCCC T ss_conf 98268861108990787599838985 No 18 >>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* (A:342-444) Probab=30.70 E-value=32 Score=14.31 Aligned_cols=58 Identities=7% Similarity=0.189 Sum_probs=35.0 Q ss_pred ECCCCEEEEECCCCCEEEEEEE-EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCE Q ss_conf 2377526531489857787521-223525883414667610443101356532210133125521588654322211000 Q gi|254780378|r 98 LVGRGWFQVETPDKTVMYTRAG-SFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLI 176 (262) Q Consensus 98 i~G~Gff~V~~~~G~~~yTR~G-~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~~~~~~~~~~~i~~i~l 176 (262) |+|+.++.+...+ ++| .+.|.++|..-+..|.. ...++|+.+|.++ ..++.++.|-+ T Consensus 13 IdGk~Yl~L~~~~------~~g~~YTvRe~G~Vyd~~gn~----------~T~Y~V~~~g~ly------k~g~~lgniyl 70 (103) T 2jkb_A 13 INGHYYLKLKKNG------DNDFRYTVRENGVVYNETTNK----------PTNYTINDKYEVL------EGGKSLTVEQY 70 (103) T ss_dssp SSSSEEEEEEETT------CSSCCEEECGGGEEEETTTTE----------EEEEEECTTSBEE------ETTEECEEEEE T ss_pred ECCCCCEEEEECC------CCCCEEEECCCCEEEECCCCC----------CCEEEECCCCEEC------CCCCCCEECCC T ss_conf 6898626788758------998779717998498536886----------4266505775351------57654010255 Q ss_pred E Q ss_conf 0 Q gi|254780378|r 177 A 177 (262) Q Consensus 177 ~ 177 (262) . T Consensus 71 ~ 71 (103) T 2jkb_A 71 S 71 (103) T ss_dssp E T ss_pred C T ss_conf 2 No 19 >>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} (A:131-210) Probab=29.22 E-value=22 Score=15.30 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=18.5 Q ss_pred EEEEEECCCCCCCCCCCCCCCCC Q ss_conf 21223525883414667610443 Q gi|254780378|r 118 AGSFNIDSKGQLVTADGNTLVPG 140 (262) Q Consensus 118 ~G~f~~d~~G~Lvt~~G~~vl~~ 140 (262) ...++.+.+|.++|.+|++++|. T Consensus 28 ~~~lR~~~~gp~vTDnGN~IiD~ 50 (80) T 1uj6_A 28 EPELRXDGDEFYFTDGGHLIADC 50 (80) T ss_dssp CEEECEETTEECCCTTSCEEEEE T ss_pred CEEEECCCCCEEEECCCCEEEEE T ss_conf 64894179802894799889991 No 20 >>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} (A:235-369) Probab=28.47 E-value=35 Score=14.07 Aligned_cols=25 Identities=20% Similarity=0.534 Sum_probs=17.9 Q ss_pred CCCCCCEEEEEECCCCEEEEECCCC Q ss_conf 3326521212323775265314898 Q gi|254780378|r 87 VVHTGNNLDLALVGRGWFQVETPDK 111 (262) Q Consensus 87 l~~Tg~~lD~Ai~G~Gff~V~~~~G 111 (262) +..-....|++|.|=||+.|....- T Consensus 92 ~~~~~~~~Di~i~GlGWi~i~~~~~ 116 (135) T 3ec1_A 92 LSVKERKTDIVFSGLGWVTCNDPGA 116 (135) T ss_dssp EECCSSSEEEEETTTEEEEESSSCC T ss_pred EECCCCCEEEEEECCCEEEEECCCC T ss_conf 7047872029991786599978882 No 21 >>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum} (A:1-61) Probab=27.90 E-value=25 Score=14.92 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=9.8 Q ss_pred EEEECCCCCCCCCC Q ss_conf 22352588341466 Q gi|254780378|r 120 SFNIDSKGQLVTAD 133 (262) Q Consensus 120 ~f~~d~~G~Lvt~~ 133 (262) .+.+|++|||++.+ T Consensus 31 ~IEtDedGYL~n~~ 44 (61) T 1yx3_A 31 QFAVDEEGYLSNLN 44 (61) T ss_dssp EEEEETTTEECCTT T ss_pred EEEECCCCCCCCHH T ss_conf 98508876657911 No 22 >>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative; 2.09A {Plasmodium falciparum 3D7} (A:140-223) Probab=27.49 E-value=26 Score=14.81 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=17.9 Q ss_pred EEEEEECCCCCCCCCCCCCCCCC Q ss_conf 21223525883414667610443 Q gi|254780378|r 118 AGSFNIDSKGQLVTADGNTLVPG 140 (262) Q Consensus 118 ~G~f~~d~~G~Lvt~~G~~vl~~ 140 (262) ...++.+.+|.++|.+|++++|. T Consensus 31 ~~~lR~~~~gp~iTDnGN~IiD~ 53 (84) T 2f8m_A 31 TYKIRKRNGEIFITDNKNYIVDF 53 (84) T ss_dssp EEEECEETTEECCCTTSCEEEEE T ss_pred CEEEEECCCCCEEECCCCEEEEC T ss_conf 63678649964284699889983 No 23 >>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* (A:138-218,A:380-432) Probab=27.47 E-value=31 Score=14.38 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=20.3 Q ss_pred CCCEEEEECCCCCEEEEEEEEEEECCCCC Q ss_conf 77526531489857787521223525883 Q gi|254780378|r 100 GRGWFQVETPDKTVMYTRAGSFNIDSKGQ 128 (262) Q Consensus 100 G~Gff~V~~~~G~~~yTR~G~f~~d~~G~ 128 (262) |.--|.+.+++|.+.|| |+|++|.... T Consensus 24 ga~g~~I~T~~G~IvyT--GDfk~d~~p~ 50 (134) T 3bk2_A 24 DNSGVVIRTPIGTIVHT--GDFKLDPTPI 50 (134) T ss_dssp SCEEEEEEETTEEEEEC--CSCCCCSSCT T ss_pred CCCEEEEEECCEEEEEE--CCCCCCCCCC T ss_conf 54122898088579996--6623566766 No 24 >>1cru_A Protein (soluble quinoprotein glucose dehydrogenase); beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} (A:1-72,A:337-454) Probab=23.46 E-value=43 Score=13.51 Aligned_cols=13 Identities=8% Similarity=-0.184 Sum_probs=7.0 Q ss_pred CCEEEEEECCCCE Q ss_conf 5212123237752 Q gi|254780378|r 91 GNNLDLALVGRGW 103 (262) Q Consensus 91 g~~lD~Ai~G~Gf 103 (262) .+|..+|+.-+|= T Consensus 27 ~~P~~ia~~pdG~ 39 (190) T 1cru_A 27 NKPHALLWGPDNQ 39 (190) T ss_dssp SSEEEEEECTTSC T ss_pred CCCEEEEEECCCE T ss_conf 9843899918990 No 25 >>2bf6_A Sialidase, EXO-alpha-sialidase; sialic acid, hydrolase; HET: SIA; 0.97A {Clostridium perfringens} PDB: 2vk5_A 2vk6_A* 2vk7_A* (A:114-180) Probab=22.94 E-value=44 Score=13.45 Aligned_cols=56 Identities=11% Similarity=0.221 Sum_probs=32.4 Q ss_pred ECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEE Q ss_conf 23775265314898577875212235258834146676104431013565322101331255215886543222110000 Q gi|254780378|r 98 LVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIA 177 (262) Q Consensus 98 i~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~~~~~~~~~~~i~~i~l~ 177 (262) |+|++++.+-..++. .||=+ ||...+.+|.+ .+++|+.+|.++ ..++.+|.|-+. T Consensus 10 Idgk~Yl~L~~~~~~-~YTiR-------EG~V~d~~g~~-----------T~Y~V~~~g~l~------k~g~~lGNIyl~ 64 (67) T 2bf6_A 10 IDGKEYLCLYDSSGK-EFTVR-------ENVVYDKDSNK-----------TEYTTNALGDLF------KNGTKIDNINSS 64 (67) T ss_dssp ETTEEEEEEECTTCC-EEEEE-------TTEEECTTSCE-----------EEEEECTTCEEE------ETTEEEEETTSS T ss_pred CCCCEEEEEEECCCC-EEEEE-------CCEEEECCCCC-----------CEEECCCCCCCC------CCCCEECCCCCC T ss_conf 489367999966897-58863-------67588657884-----------202024655323------467031120254 Q ss_pred E Q ss_conf 0 Q gi|254780378|r 178 N 178 (262) Q Consensus 178 ~ 178 (262) . T Consensus 65 ~ 65 (67) T 2bf6_A 65 T 65 (67) T ss_dssp S T ss_pred C T ss_conf 2 No 26 >>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1} (A:1-80) Probab=22.75 E-value=38 Score=13.83 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=23.7 Q ss_pred EEEE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 5212-235258834146676104431013565322101331255 Q gi|254780378|r 117 RAGS-FNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQIL 159 (262) Q Consensus 117 R~G~-f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~ 159 (262) ..|+ |-++++|+++|.. |.| .+...+.|..||.-+ T Consensus 19 ~~GSGfii~~~G~IlTn~-HVV-------~~~~~i~V~~~g~~~ 54 (80) T 2w5e_A 19 PEGKGTGFFSGNDIVTAA-HVV-------GNNTFVNVCYEGLMY 54 (80) T ss_dssp TTEEEEEEEETTEEEEEH-HHH-------TTCSEEEEEETTEEE T ss_pred CCCCEEEEEECCEEEECC-HHH-------CCCCEEEEEEEEEEE T ss_conf 996299999899999881-570-------888378886200110 No 27 >>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, protein structure initiative; 1.90A {Bacteroides uniformis atcc 8492} (A:1-83,A:268-328) Probab=22.40 E-value=45 Score=13.38 Aligned_cols=57 Identities=9% Similarity=0.027 Sum_probs=23.4 Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEECC Q ss_conf 52121232377526531489857787521223525883414667610443101356532210133-1255215 Q gi|254780378|r 91 GNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRS-GQILAVT 162 (262) Q Consensus 91 g~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~d-G~I~~~~ 162 (262) -.+.|++..|+-.|+....++.+. .++.....++..+....+ ..|.|+++ |.|++.. T Consensus 44 ~~~~~~~~~g~~lyV~~~~~~~V~--------------ViD~~t~~~~~~i~~~~P-~~iavdp~~g~iyVtd 101 (144) T 3dsm_A 44 DVAQSXVIRDGIGWIVVNNSHVIF--------------AIDINTFKEVGRITGFKY-YGLTVNPNNGEVYVAD 101 (144) T ss_dssp SCEEEEEEETTEEEEEEGGGTEEE--------------EEETTTCCEEEEEECCCE-EEEEECTTTCCEEEEE T ss_pred CCCCEEEEECCEEEEEECCCCEEE--------------EEECCCCCEEEEEECCCE-EEEEEECCCCEEEEEE T ss_conf 751079996999999993899899--------------998998918899964888-9999957999999997 No 28 >>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} (A:1-19,A:215-397) Probab=20.89 E-value=49 Score=13.19 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=22.5 Q ss_pred CCCCEEEEECCCCCE---EEEEEEEEEECCCCCCCCCCCCCCC Q ss_conf 377526531489857---7875212235258834146676104 Q gi|254780378|r 99 VGRGWFQVETPDKTV---MYTRAGSFNIDSKGQLVTADGNTLV 138 (262) Q Consensus 99 ~G~Gff~V~~~~G~~---~yTR~G~f~~d~~G~Lvt~~G~~vl 138 (262) +|+|+|.+..|-++. .|-| =+=.|...-..|-+.|||+. T Consensus 73 ~G~G~~Em~cPh~~~~~rsY~~-~ra~l~~g~v~VvPaghP~~ 114 (202) T 2phl_A 73 EGEAHVELVGPKGNKETLEYES-YRAELSKDDVFVIPAAYPVA 114 (202) T ss_dssp ESEEEEEEEEECC--CCSCEEE-EEEEEETTCEEEECTTCCEE T ss_pred CCEEEEEEEECCCCCCCCCCEE-EEEEECCCCEEEECCCCEEE T ss_conf 1617899981799733212022-31258598689999999288 No 29 >>3fgb_A Uncharacterized protein Q89ZH8_bactn; BTR289B, NESG, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} (A:43-140) Probab=20.18 E-value=51 Score=13.10 Aligned_cols=38 Identities=8% Similarity=0.110 Sum_probs=20.5 Q ss_pred CCCCCCCCCCCE-EEECCCCCCCCCCCCCCCEEECCCCCCCCCCC Q ss_conf 653221013312-55215886543222110000026620010068 Q gi|254780378|r 146 ETREIKVSRSGQ-ILAVTGKNSDFQPVGQLLIANFINEAGLRNIG 189 (262) Q Consensus 146 ~~~~i~i~~dG~-I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g 189 (262) ....+.++.||. +++.... -+.|.+++......+.++- T Consensus 49 g~~~~~is~dg~~l~van~~------~~~v~v~~~~~~~~i~~i~ 87 (98) T 3fgb_A 49 GEDPCYIITNGSNVVTANYS------GGSISVFPIDKDGSLLPAS 87 (98) T ss_dssp SSCEEEEEECSSEEEEEETT------TTEEEEEEBCTTSCBCSCC T ss_pred CCCCEEEECCCCEEEEEECC------CCEEEEEEECCCCCEEEEE T ss_conf 99858997289957997658------9879999804678413667 Done!