HHSEARCH alignment of GI: 254780378 and SCOP domain: d1wlga_

Alignment
>d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella typhimurium [TaxId: 90371]}
Probab=99.96  E-value=4.2e-30  Score=199.68  Aligned_cols=129  Identities=33%  Similarity=0.567  Sum_probs=114.8

Q ss_pred             EEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC-----------------CCCCCC----------
Q ss_conf             21232377526531489857787521223525883414667610443-----------------101356----------
Q gi|254780378|r   94 LDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPG-----------------IVIPEE----------  146 (262)
Q Consensus        94 lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~-----------------~~~p~~----------  146 (262)
                      |||||+|+|||.|++++|+++|||+|+|++|++|+|||.+|++|+++                 +.+|..          
T Consensus         2 LDlAI~G~GFFvV~~~~g~~~YTRaG~F~~D~~G~Lvn~~G~~l~G~~~d~~~~~~~~~~~~~~i~i~~~~~~~~aTt~~   81 (293)
T d1wlga_           2 LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTA   81 (293)
T ss_dssp             EECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEEEEECBTTTTBCCTTCCCEECCCCCCCBCCBCCCEE
T ss_pred             CCEEECCCEEEEEECCCCCEEEECCCCEEECCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             64787487079987699988784488732989999883999989857636888631257765544344434577655146


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780378|r  147 --------------------------------------------------------------------------------  146 (262)
Q Consensus       147 --------------------------------------------------------------------------------  146 (262)
                                                                                                      
T Consensus        82 ~~~~NL~~~~~~~~~~~~~~~~~~t~~~~~s~~vyDs~G~~~~v~~~f~k~~~~~w~~~~~~~~~~~~~~~~~~~~~l~F  161 (293)
T d1wlga_          82 SMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATAPTTASTTLKF  161 (293)
T ss_dssp             EEEEEEETTCCCCSSCSCCTTCTTSCSEEEEEEEECTTCCEEEEEEEEEEEETTEEEEEEEETTCTTCCCCCSCSEEEEE
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCEEEEEC
T ss_conf             77416642123553222234787763301136764225864222056662046541378712566445466431356532


Q ss_pred             --------------------------------------------------------CCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf             --------------------------------------------------------532210133125521588654322
Q gi|254780378|r  147 --------------------------------------------------------TREIKVSRSGQILAVTGKNSDFQP  170 (262)
Q Consensus       147 --------------------------------------------------------~~~i~i~~dG~I~~~~~~~~~~~~  170 (262)
                                                                              ...+.|++||.|.+.+ .|+..++
T Consensus       162 ~~~G~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~dG~i~~~y-sNG~~~~  240 (293)
T d1wlga_         162 NENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVGNY-SNEQEQV  240 (293)
T ss_dssp             CTTSBEEECCEEEEECCCBTTBCCCEEEEECTTCEEESSCCCEEEEEEECCBCCBCEEEEEECTTCEEEEEE-TTSCEEE
T ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCEEEEEEE-CCCCEEE
T ss_conf             786322233310002344112432100025221000125740024432688431123210665875899997-6996789


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHH
Q ss_conf             21100000266200100688643346666552000246776206860730010
Q gi|254780378|r  171 VGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEAS  223 (262)
Q Consensus       171 i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~S  223 (262)
                      ++||+|++|.||+.|+++|+++|+++.+||.+..+.|+..+.++|.+|+||.|
T Consensus       241 lgqiala~F~Np~gL~~~g~n~f~~t~~SG~~~~g~~g~~g~G~i~~g~LE~S  293 (293)
T d1wlga_         241 LGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGALEAS  293 (293)
T ss_dssp             EEEECEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCSSCEEEEC
T ss_pred             EEEEEEEEECCHHHHHHCCCCEEECCCCCCCCEECCCCCCCCEEEECCCEECC
T ss_conf             88999997359687321259708760016885556899888223842613169


SCOP domain information

class: All beta proteins
fold: Flagellar hook protein flgE
superfamily: Flagellar hook protein flgE
family: Flagellar hook protein flgE
domain: Flagellar hook protein flgE
species: Salmonella typhimurium [TaxId: 90371]