BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter asiaticus str. psy62] (262 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 533 bits (1372), Expect = e-153, Method: Compositional matrix adjust. Identities = 262/262 (100%), Positives = 262/262 (100%) Query: 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADK 60 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADK Sbjct: 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADK 60 Query: 61 AVVPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGS 120 AVVPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGS Sbjct: 61 AVVPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGS 120 Query: 121 FNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFI 180 FNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFI Sbjct: 121 FNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFI 180 Query: 181 NEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRA 240 NEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRA Sbjct: 181 NEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRA 240 Query: 241 YEMNSKVIEAADEMSSLITKMR 262 YEMNSKVIEAADEMSSLITKMR Sbjct: 241 YEMNSKVIEAADEMSSLITKMR 262 >gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] Length = 421 Score = 75.1 bits (183), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 16/132 (12%) Query: 7 AAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEG 66 A +GM AQ + +++NIAN++T GYKR F+ ++ PS S Sbjct: 10 AMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVF--------PSTSNSY------ 55 Query: 67 ISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSK 126 + G++IS+ + QG ++HT +N DLA+ G+G+F V+ D TRAG F+I+++ Sbjct: 56 --VSGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNE 113 Query: 127 GQLVTADGNTLV 138 G L G L+ Sbjct: 114 GFLENVAGGVLL 125 Score = 55.8 bits (133), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 16/161 (9%) Query: 117 RAGSFNIDSKG--QLVTAD--GNTLVPGIVIPEET----------REIKVSRSGQILAVT 162 +A SFN ++ G Q +T D T + G IP+++ ++ VS+ G + + Sbjct: 262 KAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIY 321 Query: 163 GKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEA 222 + P+ +L IA +E L+ N T SGD I P + G LE Sbjct: 322 DDGTRV-PIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALET 380 Query: 223 SNVDAVKEISEMISAQRAYEMNSKVIE-AADEMSSLITKMR 262 +NVD E++E+I AQR Y +NSKV + +D M LI+ R Sbjct: 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 >gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62] Length = 243 Score = 67.8 bits (164), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 32/252 (12%) Query: 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAV 62 +F I A A + L +A+N++N +T G++ + +F++ V G+ D+ + Sbjct: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-------VVGAIKNDIDQKI 56 Query: 63 VPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFN 122 + SG + S + V G + TG LD AL G WF +E+P + ++ TR G F Sbjct: 57 S----FVASGKEYLS-KEV---GSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFK 107 Query: 123 IDSKGQLVTADGNTLVPGIV-IPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFIN 181 + G LV+A G V + +P I++ + +I V G+ + G++ I Sbjct: 108 VTDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNV-GEKGEISQKGKV-----IA 156 Query: 182 EAGLRNI--GDNLLARTSVSGDP-IISNP-DDIGFAHVKQGYLEASNVDAVKEISEMISA 237 GL ++ + R + P I P +D+ VK+G+LE SN +++ E+ +MI Sbjct: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 Query: 238 QRAYEMNSKVIE 249 + + + +I+ Sbjct: 217 TQKFNSITTLID 228 >gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter asiaticus str. psy62] Length = 134 Score = 32.3 bits (72), Expect = 0.009, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 7/47 (14%) Query: 6 IAAAGMSAQQTNLEIIANNIANINTTG-------YKRARAEFADFLY 45 IA +G++ Q ++II+ NIAN TTG Y+R F + ++ Sbjct: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56 >gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] Length = 480 Score = 29.6 bits (65), Expect = 0.052, Method: Compositional matrix adjust. Identities = 12/43 (27%), Positives = 26/43 (60%) Query: 212 FAHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEM 254 F H+ + Y V+ +E+S +I +++Y +++K+I D+M Sbjct: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 >gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 624 Score = 24.6 bits (52), Expect = 2.0, Method: Compositional matrix adjust. Identities = 8/29 (27%), Positives = 18/29 (62%) Query: 121 FNIDSKGQLVTADGNTLVPGIVIPEETRE 149 FN++ +G ++ G+ + G+++ TRE Sbjct: 516 FNLEDRGSMIVEPGDKVYQGMIVGIHTRE 544 >gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 22.3 bits (46), Expect = 9.4, Method: Compositional matrix adjust. Identities = 10/32 (31%), Positives = 14/32 (43%) Query: 96 LALVGRGWFQVETPDKTVMYTRAGSFNIDSKG 127 A GR W +T VM + ID++G Sbjct: 218 FAFTGRSWELTKTDSIDVMDALGSAIRIDARG 249 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.313 0.130 0.351 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 147,243 Number of Sequences: 1233 Number of extensions: 5880 Number of successful extensions: 17 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 11 length of query: 262 length of database: 328,796 effective HSP length: 72 effective length of query: 190 effective length of database: 240,020 effective search space: 45603800 effective search space used: 45603800 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 37 (18.9 bits)