BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780378|ref|YP_003064791.1| flagellar basal body rod
protein FlgG [Candidatus Liberibacter asiaticus str. psy62]
         (262 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 262

 Score =  533 bits (1372), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 262/262 (100%), Positives = 262/262 (100%)

Query: 1   MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADK 60
           MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADK
Sbjct: 1   MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADK 60

Query: 61  AVVPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGS 120
           AVVPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGS
Sbjct: 61  AVVPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGS 120

Query: 121 FNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFI 180
           FNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFI
Sbjct: 121 FNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFI 180

Query: 181 NEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRA 240
           NEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRA
Sbjct: 181 NEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRA 240

Query: 241 YEMNSKVIEAADEMSSLITKMR 262
           YEMNSKVIEAADEMSSLITKMR
Sbjct: 241 YEMNSKVIEAADEMSSLITKMR 262


>gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 421

 Score = 75.1 bits (183), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 16/132 (12%)

Query: 7   AAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEG 66
           A +GM AQ   +  +++NIAN++T GYKR    F+  ++        PS S         
Sbjct: 10  AMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVF--------PSTSNSY------ 55

Query: 67  ISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSK 126
             +  G++IS+   +  QG ++HT +N DLA+ G+G+F V+  D     TRAG F+I+++
Sbjct: 56  --VSGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNE 113

Query: 127 GQLVTADGNTLV 138
           G L    G  L+
Sbjct: 114 GFLENVAGGVLL 125



 Score = 55.8 bits (133), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 16/161 (9%)

Query: 117 RAGSFNIDSKG--QLVTAD--GNTLVPGIVIPEET----------REIKVSRSGQILAVT 162
           +A SFN ++ G  Q +T D    T + G  IP+++          ++  VS+ G +  + 
Sbjct: 262 KAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIY 321

Query: 163 GKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEA 222
              +   P+ +L IA   +E  L+    N    T  SGD  I  P       +  G LE 
Sbjct: 322 DDGTRV-PIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALET 380

Query: 223 SNVDAVKEISEMISAQRAYEMNSKVIE-AADEMSSLITKMR 262
           +NVD   E++E+I AQR Y +NSKV +  +D M  LI+  R
Sbjct: 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421


>gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 243

 Score = 67.8 bits (164), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 32/252 (12%)

Query: 3   AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAV 62
           +F I  A   A +  L  +A+N++N +T G++  + +F++       V G+     D+ +
Sbjct: 4   SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-------VVGAIKNDIDQKI 56

Query: 63  VPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFN 122
                 + SG +  S + V   G  + TG  LD AL G  WF +E+P + ++ TR G F 
Sbjct: 57  S----FVASGKEYLS-KEV---GSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFK 107

Query: 123 IDSKGQLVTADGNTLVPGIV-IPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFIN 181
           +   G LV+A G   V  +  +P     I++ +  +I  V G+  +    G++     I 
Sbjct: 108 VTDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNV-GEKGEISQKGKV-----IA 156

Query: 182 EAGLRNI--GDNLLARTSVSGDP-IISNP-DDIGFAHVKQGYLEASNVDAVKEISEMISA 237
             GL ++      + R +    P I   P +D+    VK+G+LE SN +++ E+ +MI  
Sbjct: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216

Query: 238 QRAYEMNSKVIE 249
            + +   + +I+
Sbjct: 217 TQKFNSITTLID 228


>gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 134

 Score = 32.3 bits (72), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 6  IAAAGMSAQQTNLEIIANNIANINTTG-------YKRARAEFADFLY 45
          IA +G++ Q   ++II+ NIAN  TTG       Y+R    F + ++
Sbjct: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56


>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 480

 Score = 29.6 bits (65), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 12/43 (27%), Positives = 26/43 (60%)

Query: 212 FAHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEM 254
           F H+ + Y     V+  +E+S +I  +++Y +++K+I   D+M
Sbjct: 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471


>gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 624

 Score = 24.6 bits (52), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 121 FNIDSKGQLVTADGNTLVPGIVIPEETRE 149
           FN++ +G ++   G+ +  G+++   TRE
Sbjct: 516 FNLEDRGSMIVEPGDKVYQGMIVGIHTRE 544


>gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 22.3 bits (46), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 96  LALVGRGWFQVETPDKTVMYTRAGSFNIDSKG 127
            A  GR W   +T    VM     +  ID++G
Sbjct: 218 FAFTGRSWELTKTDSIDVMDALGSAIRIDARG 249


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.313    0.130    0.351 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,243
Number of Sequences: 1233
Number of extensions: 5880
Number of successful extensions: 17
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 11
length of query: 262
length of database: 328,796
effective HSP length: 72
effective length of query: 190
effective length of database: 240,020
effective search space: 45603800
effective search space used: 45603800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 37 (18.9 bits)