HHsearch alignment for GI: 254780379 and conserved domain: PRK00253

>PRK00253 fliE flagellar hook-basal body protein FliE; Reviewed.
Probab=99.96  E-value=6.3e-28  Score=185.25  Aligned_cols=102  Identities=18%  Similarity=0.282  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHH
Q ss_conf             676528999966545421101367777778888665999999999999999999999999998148--989999999999
Q gi|254780379|r    4 EQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGK--TSMREAVDHIMQ   81 (108)
Q Consensus         4 ~~i~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~--~dl~~vmia~~k   81 (108)
T Consensus         2 s~i~~i~~~l~qm~a~a~~a~~---~~~~~~a~~~~F~~~L~~al~~Vn~~Q~~A~~~~~~~~~G~~~v~l~~vMIa~qk   78 (105)
T PRK00253          2 SAIQGIEGVLSQLQATAMEASG---TPKPLTAPTVSFAGMLKAALDKVNDTQQAARTLAEKFELGDPGVDLNDVMIALQK   78 (105)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             5056599999999999998659---9999999999889999999999999999999999999869998879999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999999999999999961889
Q gi|254780379|r   82 AERTLNLSIALRDKILSAVSEVSKMQI  108 (108)
Q Consensus        82 A~lsl~~~vqVRnK~v~AYqeImrMqV  108 (108)
T Consensus        79 A~lsfq~~~qVRNK~v~AYqEIM~MqV  105 (105)
T PRK00253         79 ASVSFQAGIQVRNKLVAAYQEIMNMQV  105 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             888999999999999999999982899