HHsearch alignment for GI: 254780379 and conserved domain: PRK00253
>PRK00253 fliE flagellar hook-basal body protein FliE; Reviewed.
Probab=99.96 E-value=6.3e-28 Score=185.25 Aligned_cols=102 Identities=18% Similarity=0.282 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHH
Q ss_conf 676528999966545421101367777778888665999999999999999999999999998148--989999999999
Q gi|254780379|r 4 EQIQGTNSFISHTDTIGMRYDFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGK--TSMREAVDHIMQ 81 (108)
Q Consensus 4 ~~i~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~--~dl~~vmia~~k 81 (108)
T Consensus 2 s~i~~i~~~l~qm~a~a~~a~~---~~~~~~a~~~~F~~~L~~al~~Vn~~Q~~A~~~~~~~~~G~~~v~l~~vMIa~qk 78 (105)
T PRK00253 2 SAIQGIEGVLSQLQATAMEASG---TPKPLTAPTVSFAGMLKAALDKVNDTQQAARTLAEKFELGDPGVDLNDVMIALQK 78 (105)
T ss_pred CCHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 5056599999999999998659---9999999999889999999999999999999999999869998879999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999999999999961889
Q gi|254780379|r 82 AERTLNLSIALRDKILSAVSEVSKMQI 108 (108)
Q Consensus 82 A~lsl~~~vqVRnK~v~AYqeImrMqV 108 (108)
T Consensus 79 A~lsfq~~~qVRNK~v~AYqEIM~MqV 105 (105)
T PRK00253 79 ASVSFQAGIQVRNKLVAAYQEIMNMQV 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 888999999999999999999982899