HHsearch alignment for GI: 254780379 and conserved domain: PRK00790
>PRK00790 fliE flagellar hook-basal body protein FliE; Reviewed.
Probab=99.92 E-value=9e-25 Score=166.58 Aligned_cols=83 Identities=33% Similarity=0.517 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 67777778888665999999999999999999999999998148989999999999999999999999999999999961
Q gi|254780379|r 26 TQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQAERTLNLSIALRDKILSAVSEVSK 105 (108)
Q Consensus 26 ~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImr 105 (108)
T Consensus 17 ~~~pa~~~~a~g~sF~~~l~~a~~~~~~t~~~aE~~s~~~~~Gkad~~~vv~a~~~Ae~slq~~v~VRdKvv~AYqEI~R 96 (99)
T PRK00790 17 ASAPAAAPAAPGASFASVLGQAAGDAVQTLKAAEATSIAAIKGKADPRAVVEAVMQAEQALQTAVAIRDKVVEAYQEILR 96 (99)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 78988899999977999999999999999999999999987389979999999999999999999999999999999981
Q ss_pred CCC
Q ss_conf 889
Q gi|254780379|r 106 MQI 108 (108)
Q Consensus 106 MqV 108 (108)
T Consensus 97 M~i 99 (99)
T PRK00790 97 MPI 99 (99)
T ss_pred CCC
T ss_conf 889