HHsearch alignment for GI: 254780379 and conserved domain: PRK03907
>PRK03907 fliE flagellar hook-basal body protein FliE; Reviewed.
Probab=99.95 E-value=3.1e-27 Score=181.19 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13677777788886659999999999999999999999999981489-89999999999999999999999999999999
Q gi|254780379|r 24 DFTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKT-SMREAVDHIMQAERTLNLSIALRDKILSAVSE 102 (108)
Q Consensus 24 ~~~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~-dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqe 102 (108)
T Consensus 15 ~~~~~~~~~~~~~g~~F~~~L~~ai~~VN~~Q~~ad~~~~~la~G~~~dlHevmIa~ekA~ls~ql~~qVRNK~veAYqE 94 (100)
T PRK03907 15 KSETSKSTFKEGKGGEFAKMLKQSINELNKTQEQSDKALADIATGQVKDLHQAAIAIGKAETSMKLMLEVRNKAISAYKE 94 (100)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57777775456887649999999999999999999999999976886769999999999888999999999999999999
Q ss_pred HHCCCC
Q ss_conf 961889
Q gi|254780379|r 103 VSKMQI 108 (108)
Q Consensus 103 ImrMqV 108 (108)
T Consensus 95 IMRMQI 100 (100)
T PRK03907 95 ILRTQI 100 (100)
T ss_pred HHHCCC
T ss_conf 985359