HHsearch alignment for GI: 254780379 and conserved domain: pfam02049
>pfam02049 FliE Flagellar hook-basal body complex protein FliE.
Probab=99.93 E-value=2.2e-25 Score=170.19 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=77.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 367777778888665999999999999999999999999998148-9899999999999999999999999999999999
Q gi|254780379|r 25 FTQNSNEEGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGK-TSMREAVDHIMQAERTLNLSIALRDKILSAVSEV 103 (108)
Q Consensus 25 ~~~~~~~~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~-~dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeI 103 (108)
T Consensus 13 ~~~~~~~~~~~~~~sF~~~l~~a~~~vn~~q~~a~~~~~~~~~G~~~~l~~vmia~~kA~~s~q~~~qVRnK~v~AYqei 92 (97)
T pfam02049 13 GASAASASAAAGGASFADVLKQALDKVNDLQQKADALAEAFATGKSVDLHEVMIAVQKASLSFQATVQVRNKLVEAYQEI 92 (97)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88877888899998899999999999999999999999999848988799999999999999999999999999999999
Q ss_pred HCCCC
Q ss_conf 61889
Q gi|254780379|r 104 SKMQI 108 (108)
Q Consensus 104 mrMqV 108 (108)
T Consensus 93 mrMqv 97 (97)
T pfam02049 93 MRMQI 97 (97)
T ss_pred HCCCC
T ss_conf 81889