Query gi|254780379|ref|YP_003064792.1| flagellar hook-basal body protein FliE [Candidatus Liberibacter asiaticus str. psy62] Match_columns 108 No_of_seqs 102 out of 524 Neff 6.0 Searched_HMMs 33803 Date Wed Jun 1 12:34:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780379.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2qn0_A Neurotoxin; botulism, 33.9 22 0.00066 15.8 1.8 14 92-105 56-69 (87) 2 >1pdn_C Protein (PRD paired); 18.6 60 0.0018 13.3 1.7 12 91-102 5-16 (53) 3 >3c24_A Putative oxidoreductas 17.4 61 0.0018 13.2 1.5 36 38-73 5-40 (72) 4 >1se7_A HOT, homologue of the 11.6 93 0.0027 12.1 1.3 10 99-108 27-36 (83) 5 >2qn0_A Neurotoxin; botulism, 11.2 96 0.0028 12.1 2.2 17 88-104 7-23 (65) 6 >2bpq_A Anthranilate phosphori 10.8 94 0.0028 12.1 0.9 40 32-71 19-58 (212) 7 >2k27_A Paired box protein PAX 10.7 99 0.0029 11.9 2.2 13 90-102 28-40 (75) 8 >1l6x_B Minimized B-domain of 10.4 1E+02 0.003 11.9 1.3 10 98-107 7-16 (34) 9 >1zda_A Mini protein A domain, 10.1 1E+02 0.0031 11.8 1.5 10 98-107 12-21 (38) 10 >1wwp_A Hypothetical protein T 9.9 76 0.0022 12.7 0.1 18 86-103 77-94 (119) No 1 >>2qn0_A Neurotoxin; botulism, snares, protease; 1.75A {Clostridium botulinum} PDB: 3deb_A (A:223-278,A:344-374) Probab=33.91 E-value=22 Score=15.81 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=11.0 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 99999999999961 Q gi|254780379|r 92 LRDKILSAVSEVSK 105 (108) Q Consensus 92 VRnK~v~AYqeImr 105 (108) +|||.|+-|+|+.. T Consensus 56 ~~~~~~~~~~~~~~ 69 (87) T 2qn0_A 56 IRNKFVELYNELTQ 69 (87) T ss_dssp GHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHH T ss_conf 28999999999982 No 2 >>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} (C:17-69) Probab=18.56 E-value=60 Score=13.26 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=7.4 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999999 Q gi|254780379|r 91 ALRDKILSAVSE 102 (108) Q Consensus 91 qVRnK~v~AYqe 102 (108) -.|.|+|++|++ T Consensus 5 DlR~riv~~~~~ 16 (53) T 1pdn_C 5 NIRLKIVEMAAD 16 (53) T ss_dssp HHHHHHHHHHHT T ss_pred HHHHHHHHHHHC T ss_conf 999999999986 No 3 >>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.62A {Jannaschia SP} (A:196-267) Probab=17.44 E-value=61 Score=13.22 Aligned_cols=36 Identities=8% Similarity=0.093 Sum_probs=26.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 659999999999999999999999999981489899 Q gi|254780379|r 38 ISFSALLQDMAKGAIGDMEKAENVSLAALQGKTSMR 73 (108) Q Consensus 38 ~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~dl~ 73 (108) .+|..+|.++++++...----++...+|++|-.++- T Consensus 5 ~~ll~~mreA~dE~V~r~GVP~~aArdfLlGH~~i~ 40 (72) T 3c24_A 5 XPFVETXVHAVDECADRYGIDRQAALDFXIGHLNVE 40 (72) T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 899999999999999984998999999986354445 No 4 >>1se7_A HOT, homologue of the theta subunit of DNA polymerase III; E. coli bacteriophage P1, homologue of theta, E. coli DNA polymerase III; NMR {Enterobacteria phage P1} (A:) Probab=11.59 E-value=93 Score=12.13 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=7.2 Q ss_pred HHHHHHCCCC Q ss_conf 9999961889 Q gi|254780379|r 99 AVSEVSKMQI 108 (108) Q Consensus 99 AYqeImrMqV 108 (108) ||+|=.|||| T Consensus 27 afkERyNmpV 36 (83) T 1se7_A 27 AYKERLNIPV 36 (83) T ss_dssp HHHHHTCCCC T ss_pred HHHHHHCCCC T ss_conf 9999817854 No 5 >>2qn0_A Neurotoxin; botulism, snares, protease; 1.75A {Clostridium botulinum} PDB: 3deb_A (A:279-343) Probab=11.18 E-value=96 Score=12.05 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=12.6 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999996 Q gi|254780379|r 88 LSIALRDKILSAVSEVS 104 (108) Q Consensus 88 ~~vqVRnK~v~AYqeIm 104 (108) +-.++|+|+++-|+.|- T Consensus 7 ~~~~iy~k~L~~y~~IA 23 (65) T 2qn0_A 7 ARKYFEEKALDYYRSIA 23 (65) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 67899999877799999 No 6 >>2bpq_A Anthranilate phosphoribosyltransferase; tryptophan biosynthesis, transferase phosphoribosyltransferase, amino-acid biosynthesis; 1.9A {Mycobacterium tuberculosis} PDB: 1zvw_A* (A:1-112,A:185-284) Probab=10.77 E-value=94 Score=12.09 Aligned_cols=40 Identities=13% Similarity=0.064 Sum_probs=33.0 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 7888866599999999999999999999999999814898 Q gi|254780379|r 32 EGGSSPISFSALLQDMAKGAIGDMEKAENVSLAALQGKTS 71 (108) Q Consensus 32 ~~~~~~~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~d 71 (108) ........|.++++...+.-+=...++......+..|+.+ T Consensus 19 ~~~~~~~~~~~~l~kl~~g~~Ls~eEa~~~~~~i~~g~~s 58 (212) T 2bpq_A 19 AEAASVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNAR 58 (212) T ss_dssp ------CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCCC T ss_pred CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 7877779889999999769997999999999999879999 No 7 >>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens} (A:1-75) Probab=10.69 E-value=99 Score=11.95 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q gi|254780379|r 90 IALRDKILSAVSE 102 (108) Q Consensus 90 vqVRnK~v~AYqe 102 (108) +..|.|+|++|++ T Consensus 28 ~DLR~rIV~~~~~ 40 (75) T 2k27_A 28 EVVRQRIVDLAHQ 40 (75) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHC T ss_conf 9999999999975 No 8 >>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} (B:) Probab=10.44 E-value=1e+02 Score=11.90 Aligned_cols=10 Identities=10% Similarity=-0.117 Sum_probs=0.0 Q ss_pred HHHHHHHCCC Q ss_conf 9999996188 Q gi|254780379|r 98 SAVSEVSKMQ 107 (108) Q Consensus 98 ~AYqeImrMq 107 (108) .||-||.+|| T Consensus 7 ~afyEil~lP 16 (34) T 1l6x_B 7 RRFYEALHDP 16 (34) T ss_dssp HHHHHHHHCT T ss_pred HHHHHHHHCC T ss_conf 9999998088 No 9 >>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} (A:) Probab=10.07 E-value=1e+02 Score=11.82 Aligned_cols=10 Identities=10% Similarity=-0.117 Sum_probs=0.0 Q ss_pred HHHHHHHCCC Q ss_conf 9999996188 Q gi|254780379|r 98 SAVSEVSKMQ 107 (108) Q Consensus 98 ~AYqeImrMq 107 (108) .||-||.+|| T Consensus 12 ~afyEil~lP 21 (38) T 1zda_A 12 RRFYEALHDP 21 (38) T ss_dssp HHHHHHHSCS T ss_pred HHHHHHHHCC T ss_conf 9999998188 No 10 >>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8} (A:) Probab=9.86 E-value=76 Score=12.66 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999 Q gi|254780379|r 86 LNLSIALRDKILSAVSEV 103 (108) Q Consensus 86 l~~~vqVRnK~v~AYqeI 103 (108) +.-++..||.++--|.+| T Consensus 77 l~~~~~~RN~lvH~Y~~i 94 (119) T 1wwp_A 77 ALGXVDDRSLTVHTYNEP 94 (119) T ss_dssp HHHHHHHHHHGGGTTSHH T ss_pred HHHHHHHCCCCCCCCCHH T ss_conf 999998658532224598 Done!