Query gi|254780379|ref|YP_003064792.1| flagellar hook-basal body protein FliE [Candidatus Liberibacter asiaticus str. psy62] Match_columns 108 No_of_seqs 102 out of 524 Neff 6.0 Searched_HMMs 13730 Date Wed Jun 1 03:18:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780379.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1wgwa_ a.24.13.1 (A:) Signal 40.2 9.6 0.0007 15.7 2.7 55 38-98 8-62 (99) 2 d2idob1 a.237.1.1 (B:2-76) Hom 14.5 31 0.0022 12.7 1.4 10 99-108 26-35 (75) 3 d2ae9a1 a.237.1.1 (A:1-76) The 12.3 36 0.0026 12.3 1.3 10 99-108 26-35 (76) 4 d1j8yf1 a.24.13.1 (F:3-86) Sig 11.6 38 0.0027 12.1 1.7 27 72-98 27-53 (84) 5 d1ls1a1 a.24.13.1 (A:1-88) Sig 10.9 40 0.0029 12.0 1.7 28 72-99 31-58 (88) 6 d1k78a1 a.4.1.5 (A:19-81) Pax- 9.3 46 0.0033 11.6 1.7 17 86-102 40-56 (63) 7 d1fc2c_ a.8.1.1 (C:) Immunoglo 8.6 49 0.0035 11.5 1.4 10 98-107 7-16 (44) 8 d2clya1 f.52.1.1 (A:79-183) AT 7.0 57 0.0042 11.0 8.6 36 70-105 40-75 (105) 9 d2i9xa1 d.366.1.1 (A:1-84) Put 6.7 60 0.0044 10.9 2.8 15 88-102 68-82 (84) 10 d2dw4a1 a.4.1.18 (A:172-273) L 5.0 76 0.0055 10.3 2.2 16 87-102 37-52 (102) No 1 >d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]} Probab=40.17 E-value=9.6 Score=15.65 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=34.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6599999999999999999999999999814898999999999999999999999999999 Q gi|254780379|r 38 ISFSALLQDMAKGAIGDMEKAENVSLAALQGKTSMREAVDHIMQAERTLNLSIALRDKILS 98 (108) Q Consensus 38 ~sF~~~L~~~i~~vn~~q~~a~~~~~~~~~G~~dl~~vmia~~kA~lsl~~~vqVRnK~v~ 98 (108) .+-++-|.+++........-.|.....+ +.|+-.|.-+|++.+..+-+.++++-+ T Consensus 8 a~L~~~i~~a~~~l~~~~~i~E~~I~~~------l~eI~~ALLeADVn~~vV~~f~~~Ik~ 62 (99) T d1wgwa_ 8 ADLGRKITSALRSLSNATIINEEVLNAM------LKEVCTALLEADVNIKLVKQLRENVKS 62 (99) T ss_dssp SHHHHHHHHHHHHHHHCSSCCHHHHHHH------HHHHHHHHHTTTCCHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHH------HHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 2698999999999738897889999999------999999988745888999999999999 No 2 >d2idob1 a.237.1.1 (B:2-76) Homolog of theta (HOT) {Bacteriophage P1 [TaxId: 10678]} Probab=14.52 E-value=31 Score=12.66 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=7.9 Q ss_pred HHHHHHCCCC Q ss_conf 9999961889 Q gi|254780379|r 99 AVSEVSKMQI 108 (108) Q Consensus 99 AYqeImrMqV 108 (108) ||+|=+|||| T Consensus 26 a~kERyNmpV 35 (75) T d2idob1 26 AYKERLNIPV 35 (75) T ss_dssp HHHHHHTCCC T ss_pred HHHHHHCCCC T ss_conf 9999817820 No 3 >d2ae9a1 a.237.1.1 (A:1-76) Theta subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} Probab=12.34 E-value=36 Score=12.27 Aligned_cols=10 Identities=30% Similarity=0.345 Sum_probs=7.6 Q ss_pred HHHHHHCCCC Q ss_conf 9999961889 Q gi|254780379|r 99 AVSEVSKMQI 108 (108) Q Consensus 99 AYqeImrMqV 108 (108) ||+|=+|||| T Consensus 26 a~kERyNmpV 35 (76) T d2ae9a1 26 AFKERYNMPV 35 (76) T ss_dssp HHHHHHHCCC T ss_pred HHHHHHCCCC T ss_conf 9999817832 No 4 >d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Probab=11.63 E-value=38 Score=12.14 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=19.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999 Q gi|254780379|r 72 MREAVDHIMQAERTLNLSIALRDKILS 98 (108) Q Consensus 72 l~~vmia~~kA~lsl~~~vqVRnK~v~ 98 (108) +.++-.|.-+|+++++.+-+.++++-+ T Consensus 27 l~eIr~ALLeADVn~~vv~~f~~~ik~ 53 (84) T d1j8yf1 27 IKELQKSLISADVNVKLVFSLTNKIKE 53 (84) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 999999998656579999999999999 No 5 >d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Probab=10.88 E-value=40 Score=11.99 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=20.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999 Q gi|254780379|r 72 MREAVDHIMQAERTLNLSIALRDKILSA 99 (108) Q Consensus 72 l~~vmia~~kA~lsl~~~vqVRnK~v~A 99 (108) +.++-.|.-+|++++..+-+.++++-+- T Consensus 31 l~eir~ALLeADV~l~vvk~f~~~ik~k 58 (88) T d1ls1a1 31 LREIRRALMDADVNLEVARDFVERVREE 58 (88) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 9999999998455789999999999998 No 6 >d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]} Probab=9.29 E-value=46 Score=11.64 Aligned_cols=17 Identities=35% Similarity=0.299 Sum_probs=6.7 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999 Q gi|254780379|r 86 LNLSIALRDKILSAVSE 102 (108) Q Consensus 86 l~~~vqVRnK~v~AYqe 102 (108) |.....--+|.+.-|+| T Consensus 40 f~VS~s~v~k~l~r~re 56 (63) T d1k78a1 40 LRVSHGCVSKILGRYYE 56 (63) T ss_dssp HTCCHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHH T ss_conf 59779999999999997 No 7 >d1fc2c_ a.8.1.1 (C:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]} Probab=8.62 E-value=49 Score=11.47 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=4.3 Q ss_pred HHHHHHHCCC Q ss_conf 9999996188 Q gi|254780379|r 98 SAVSEVSKMQ 107 (108) Q Consensus 98 ~AYqeImrMq 107 (108) .|+-||++|| T Consensus 7 ~Af~Eil~lP 16 (44) T d1fc2c_ 7 NAFYEILHLP 16 (44) T ss_dssp HHHHHHHTCS T ss_pred HHHHHHHHCC T ss_conf 9999998388 No 8 >d2clya1 f.52.1.1 (A:79-183) ATP synthase subunit b, mitochondrial {Cow (Bos taurus) [TaxId: 9913]} Probab=7.05 E-value=57 Score=11.04 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=32.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 989999999999999999999999999999999961 Q gi|254780379|r 70 TSMREAVDHIMQAERTLNLSIALRDKILSAVSEVSK 105 (108) Q Consensus 70 ~dl~~vmia~~kA~lsl~~~vqVRnK~v~AYqeImr 105 (108) ++.......+.|-.++|++=..-|.++...|.|+-+ T Consensus 40 ~~~~~~Lfda~kEnvalqlEa~yrerl~~v~~evK~ 75 (105) T d2clya1 40 VQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKN 75 (105) T ss_dssp TGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999998789988999999989999999999 No 9 >d2i9xa1 d.366.1.1 (A:1-84) Putative septation protein SpoVG {Staphylococcus epidermidis [TaxId: 1282]} Probab=6.69 E-value=60 Score=10.93 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=8.4 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999999 Q gi|254780379|r 88 LSIALRDKILSAVSE 102 (108) Q Consensus 88 ~~vqVRnK~v~AYqe 102 (108) +--++.+.+++||+| T Consensus 68 ~R~~i~~avl~aY~e 82 (84) T d2i9xa1 68 MRQEIQDAVMKVYDE 82 (84) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHC T ss_conf 999999999998762 No 10 >d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Probab=4.97 E-value=76 Score=10.31 Aligned_cols=16 Identities=13% Similarity=0.274 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999999 Q gi|254780379|r 87 NLSIALRDKILSAVSE 102 (108) Q Consensus 87 ~~~vqVRnK~v~AYqe 102 (108) +.-+.+||.++.-|.+ T Consensus 37 ~~Yl~iRN~Il~~w~~ 52 (102) T d2dw4a1 37 KVFLFIRNRTLQLWLD 52 (102) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999981 Done!