HHsearch alignment for GI: 254780380 and conserved domain: COG1815
>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion].
Probab=99.52 E-value=1.1e-13 Score=90.13 Aligned_cols=116 Identities=24% Similarity=0.367 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-----CCC-----CEEC-CC
Q ss_conf 904788885215689999999898887531255556675433201100012343221047-----542-----1000-26
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGG-----VRV-----KKIG-VD 69 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~g-----v~~-----~~i~-~~ 69 (134)
T Consensus 1 ~~~~~~~~~l~~~al~~~~~Rq~via~NIANadTP~-------yKa~dv~Fe~~L~~~~~~~~~~l~l~~T~~~Hl~~~~ 73 (133)
T COG1815 1 MMSFDRAFGLLQKALDVRSLRQEVIANNIANADTPG-------YKAKDVDFESVLKKALAGNNTTLALAKTSTRHLGPAE 73 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-------CCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC
T ss_conf 964789999999998899999999985310279999-------8744475899999987247770222008886538522
Q ss_pred CCC---CC-CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 543---10-00143211125023333056109999999999999999999999999999999999
Q gi|254780380|r 70 QST---FV-EEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLD 130 (134)
Q Consensus 70 ~~~---~~-~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~ 130 (134)
T Consensus 74 ~~~~~~~~~~~~~~~~~-~d------GNtVdld~E~~~~~kN~~~Yq~~~~~l~~~~~~~~~vl~ 131 (133)
T COG1815 74 NIDPTDASLLDRIGDQP-ND------GNTVDLDREMTEFAKNQLMYQALLSFLKSQIKMLNSVLK 131 (133)
T ss_pred CCCCCCCCCCCCCCCCC-CC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 48855444000356556-88------870438999999999999999999999999999999971