HHsearch alignment for GI: 254780380 and conserved domain: PRK06003
>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed.
Probab=99.60 E-value=1.1e-14 Score=95.31 Aligned_cols=117 Identities=27% Similarity=0.312 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-HHHHHHHCCC----CCCCEECCCCC--CC
Q ss_conf 90478888521568999999989888753125555667543320110001-2343221047----54210002654--31
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTIS-FEEVMHGSGG----VRVKKIGVDQS--TF 73 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~-~~~~~~~~~g----v~~~~i~~~~~--~~ 73 (134)
T Consensus 1 m~~-l~lf~la~~~~~~~~~Rq~viA~NIANadTPg-------YkarDv~~Fe~~l~~~~~~l~~T~~~Hi~~~~~~~~~ 72 (126)
T PRK06003 1 MSP-IYLFDLASRQAQWLSVRQATVAGNIANANTPG-------YRARDVEPFADVLDKTGLTMAATSPGHLGAEATGIDV 72 (126)
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCC
T ss_conf 971-15999999998999999999997220279999-------8612253799998614664010787650776677874
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00014321112502333305610999999999999999999999999999999999
Q gi|254780380|r 74 VEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 74 ~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
T Consensus 73 ~~~~~~~~~~~~~d----GN~V~le~Em~~~aen~~~Y~~~~~l~~~~~~ml~~Ai 124 (126)
T PRK06003 73 TEARPDDSWEVTHS----GNSVSLEQEMMKAGEINRDYSLNTAIVKSFHRMMLMTV 124 (126)
T ss_pred CCCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22332677763799----99457999999999999999999999999999999986