HHsearch alignment for GI: 254780380 and conserved domain: PRK06797
>PRK06797 flgB flagellar basal body rod protein FlgB; Reviewed.
Probab=99.38 E-value=1.8e-12 Score=83.84 Aligned_cols=104 Identities=20% Similarity=0.295 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-----------------CCCEEC---
Q ss_conf 852156899999998988875312555566754332011000123432210475-----------------421000---
Q gi|254780380|r 8 AHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGV-----------------RVKKIG--- 67 (134)
Q Consensus 8 i~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv-----------------~~~~i~--- 67 (134)
T Consensus 5 ~~~~g~~Ld~r~~Rq~viAsNIANadTPg-------YKarDv~Fe~~L~~a~~~~~~~~~~~~~~~~l~~T~~~Hl~~~~ 77 (135)
T PRK06797 5 VSDVGHYMNYLVTKRNTVSSNIANANTPG-------YKAQDVTFAEQMNKSSALYKSNAADLKSNPDLYQTNEMHLPTVN 77 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCC-------CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCC
T ss_conf 99999998899999999986102478999-------86433879999999887653011123567763547765568877
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 265431000143211125023333056109999999999999999999999999999
Q gi|254780380|r 68 VDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDM 124 (134)
Q Consensus 68 ~~~~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m 124 (134)
T Consensus 78 ~~~~~~~~~~~~~~~~~DGN------tVD~d~Em~~~a~N~l~Yqas~~~Ln~k~sl 128 (135)
T PRK06797 78 TKNTYAKIQTKSMQTNKDGN------SVDVTTEMLDLMKANQLYGISINAINTQYAI 128 (135)
T ss_pred CCCCCCEEECCCCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 88877436558998489997------5578999999999999999999998255418