HHsearch alignment for GI: 254780380 and conserved domain: PRK06802
>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed.
Probab=100.00 E-value=0 Score=280.97 Aligned_cols=130 Identities=28% Similarity=0.462 Sum_probs=115.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH----------CCCCCCCEECCCC
Q ss_conf 904788885215689999999898887531255556675433201100012343221----------0475421000265
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHG----------SGGVRVKKIGVDQ 70 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~----------~~gv~~~~i~~~~ 70 (134)
T Consensus 1 Ms-~~~~~~Ia~Sgl~Aqr~Rm~~ia~NiANa~tt~~~~-g~~y~~k~~vf~~~~~~~~~~~~~~~~~~~V~v~~i~~~~ 78 (141)
T PRK06802 1 MS-FNQIYRIAGSAMTAQTIRLNTVASNLANAESPAASA-ATVYKARSPVFSAVYSARTAADPRGVQSAQVQVLDVVEVG 78 (141)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCC
T ss_conf 96-077888999999999999999999887268889899-9866343332456553443113557788625887543589
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 431000143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r 71 STFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 71 ~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
T Consensus 79 ~~~~-~YdP~hP~Ad~~GyV~~PnVn~~~EMvdm~~AsRsYeANv~~~~~aK~m~~~aL~IGk 140 (141)
T PRK06802 79 GSVQ-RYEPNNPLANPQGYVFYPDVNVVSEMADMMSASRSFETNVEVLNSVKSMQQSLLKLGE 140 (141)
T ss_pred CCHH-HCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7331-1599999989898884689898999999999999999999999999999999998637