HHsearch alignment for GI: 254780380 and conserved domain: PRK07182
>PRK07182 flgB flagellar basal body rod protein FlgB; Reviewed.
Probab=99.36 E-value=8.3e-12 Score=80.41 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC---CCC-----------CEEC-
Q ss_conf 4788885215689999999898887531255556675433201100012343221047---542-----------1000-
Q gi|254780380|r 3 YLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGG---VRV-----------KKIG- 67 (134)
Q Consensus 3 ~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~g---v~~-----------~~i~- 67 (134)
T Consensus 4 ~f~~~lg~~~~aL~lR~~RqevlAsNIANaDTPg-------YKArDidF~~~L~~A~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T PRK07182 4 HFQKALGVHPMAMQLRLTRAELLSANLANVNTPN-------FQAKDIDFAAEMQRAKRGNGVMAAPDRSSAQMLSTQMSS 76 (148)
T ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3886737059999999999999986122168999-------866378889999998704765446665542112444442
Q ss_pred ----C---------CCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----2---------6543100014321112502333305610999999999999999999999999999999999
Q gi|254780380|r 68 ----V---------DQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 68 ----~---------~~~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~yR~p~qps~DGN------tVdld~E~a~fa~Nal~Yqasl~fl~~ki~~l~~AI 145 (148)
T PRK07182 77 AQMSSPQMMSSPQIMSSPQIKYRLPYQPSLDGN------TVALNVEQAEFSKNALDYQTSLSFLNMKLTGLKQAI 145 (148)
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 335774335664446676603326887688997------403599999999999999999999999999999987