HHsearch alignment for GI: 254780380 and conserved domain: PRK12619
>PRK12619 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=99.47 E-value=7.1e-13 Score=85.90 Aligned_cols=114 Identities=20% Similarity=0.287 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--------CEECCC-CCCC
Q ss_conf 4788885215689999999898887531255556675433201100012343221047542--------100026-5431
Q gi|254780380|r 3 YLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRV--------KKIGVD-QSTF 73 (134)
Q Consensus 3 ~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv~~--------~~i~~~-~~~~ 73 (134)
T Consensus 4 ~~d~~~gi~~~aL~~r~~Rq~via~NIANadTPg-------YKakdv~Fe~~L~~a~~~~~~~l~~t~~~Hi~~~~~~~~ 76 (130)
T PRK12619 4 NLDSYFGIHAKALIARDQRASVLANNIANVNTPN-------FKARDVDFNEVLTATMAGNSQQLRVTSDQHINTNADFMT 76 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3887866779999999999999986232168999-------864448899999998736876654478020478777666
Q ss_pred CCCCC-CCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00014-321112502333305610999999999999999999999999999999999
Q gi|254780380|r 74 VEEFD-PGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 74 ~~~y~-P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
T Consensus 77 ~~~~r~~~~~~~DG------NtVDid~Ema~~a~N~l~Yqa~~~~l~~k~~~l~~aI 127 (130)
T PRK12619 77 HLKYRMTHHASLDG------NTVDKDMETTEFARNALNYQASLSFLNGKIKSMLTAL 127 (130)
T ss_pred CCEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 51012688768999------7425799999999999999999999999999999986