HHsearch alignment for GI: 254780380 and conserved domain: PRK12620
>PRK12620 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=99.52 E-value=1.6e-13 Score=89.27 Aligned_cols=114 Identities=22% Similarity=0.345 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC---------CEECCCC---
Q ss_conf 4788885215689999999898887531255556675433201100012343221047542---------1000265---
Q gi|254780380|r 3 YLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRV---------KKIGVDQ--- 70 (134)
Q Consensus 3 ~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv~~---------~~i~~~~--- 70 (134)
T Consensus 4 ~fd~~~~~~~~aL~lr~~Rq~viasNIANadTPg-------YKardv~Fe~~L~~a~~~~~~~~l~~T~~~H~~~~~~~~ 76 (132)
T PRK12620 4 PFTSFLGVHGDALTLREQRMKLIASNLSNVDTPG-------YKAKDLNFEAALKSAQGEQDGGLMQTTDAKHYEVGGGGL 76 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4887862889999999999999986022168999-------876658789999998664667755446733016777888
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43100014321112502333305610999999999999999999999999999999999
Q gi|254780380|r 71 STFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 71 ~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
T Consensus 77 ~~~~~~~~~~~~~~DG------NtVd~d~Em~~~aeN~l~Y~a~~~~l~~ki~~l~~AI 129 (132)
T PRK12620 77 NPFQITREADQPSLDG------NTVDPDAERAAYGRAALEYRASLSFLESKVRSMLTAI 129 (132)
T ss_pred CCCEEECCCCCCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9741235788867899------8506699999999999999999999999999999986