HHsearch alignment for GI: 254780380 and conserved domain: PRK12620

>PRK12620 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=99.52  E-value=1.6e-13  Score=89.27  Aligned_cols=114  Identities=22%  Similarity=0.345  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC---------CEECCCC---
Q ss_conf             4788885215689999999898887531255556675433201100012343221047542---------1000265---
Q gi|254780380|r    3 YLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRV---------KKIGVDQ---   70 (134)
Q Consensus         3 ~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv~~---------~~i~~~~---   70 (134)
T Consensus         4 ~fd~~~~~~~~aL~lr~~Rq~viasNIANadTPg-------YKardv~Fe~~L~~a~~~~~~~~l~~T~~~H~~~~~~~~   76 (132)
T PRK12620          4 PFTSFLGVHGDALTLREQRMKLIASNLSNVDTPG-------YKAKDLNFEAALKSAQGEQDGGLMQTTDAKHYEVGGGGL   76 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             4887862889999999999999986022168999-------876658789999998664667755446733016777888


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             43100014321112502333305610999999999999999999999999999999999
Q gi|254780380|r   71 STFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL  129 (134)
Q Consensus        71 ~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l  129 (134)
T Consensus        77 ~~~~~~~~~~~~~~DG------NtVd~d~Em~~~aeN~l~Y~a~~~~l~~ki~~l~~AI  129 (132)
T PRK12620         77 NPFQITREADQPSLDG------NTVDPDAERAAYGRAALEYRASLSFLESKVRSMLTAI  129 (132)
T ss_pred             CCCEEECCCCCCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9741235788867899------8506699999999999999999999999999999986