HHsearch alignment for GI: 254780380 and conserved domain: PRK12621
>PRK12621 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=99.59 E-value=1.7e-14 Score=94.28 Aligned_cols=122 Identities=24% Similarity=0.347 Sum_probs=87.6
Q ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE--ECCCCCCCCCCC
Q ss_conf 90478-888521568999999989888753125555667543320110001234322104754210--002654310001
Q gi|254780380|r 1 MDYLI-ASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVKK--IGVDQSTFVEEF 77 (134)
Q Consensus 1 m~~l~-~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv~~~~--i~~~~~~~~~~y 77 (134)
T Consensus 1 m~~~f~~~i~ll~~aLd~~~~Rq~via~NIANadTPg-------YKardv~Fe~~L~~a~~~~~~~~l~~T~~~Hi~~~~ 73 (136)
T PRK12621 1 MKSLYEPHVNLVGKVMDMQLQRQNVVMSNIANVRTPG-------YKPRELEFEKQLQSALGLDAKGRMTRTEENHLPAVF 73 (136)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 9324787999999999999999999997132058999-------874418789999998761447864557713157888
Q ss_pred CCC----------CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 432----------11125023333056109999999999999999999999999999999999646
Q gi|254780380|r 78 DPG----------HPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 78 ~P~----------~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
T Consensus 74 ~~~~~~~~~~~~~~~~~~~dg----N~Vdid~Em~~la~N~l~Y~a~~~~l~~~~~~l~~aI~~Gr 135 (136)
T PRK12621 74 DPEGFGPEWSKAFKPRVVHGE----DRVNLDKEMAKMAKNSLQYNALTTVIKGNFEGVKNIIMEGQ 135 (136)
T ss_pred CCCCCCCCEEECCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 977677540104787646899----87654899999999999999999999999999999998348