HHsearch alignment for GI: 254780380 and conserved domain: PRK12622
>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=99.43 E-value=2e-12 Score=83.58 Aligned_cols=117 Identities=20% Similarity=0.271 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCC------CCCC-----CEECC-
Q ss_conf 90478888521568999999989888753125555667543320110001234322104------7542-----10002-
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSG------GVRV-----KKIGV- 68 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~------gv~~-----~~i~~- 68 (134)
T Consensus 1 ~~lF~~ti~ll~kaLd~~~~Rq~via~NIANadTPg-------YK~~dv~Fe~~L~~Al~~~~~~~l~l~~t~~~Hi~~~ 73 (135)
T PRK12622 1 MNIFERSVDLSHRYLDVLSLRQSVIADNIANVDTPN-------FKRSKVTFESELERAILNEDKNDLSLIRGNDKHLSGF 73 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 952788999999998899999999985010278999-------7524076999999998537777776555886566777
Q ss_pred -----CCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----6543100014321112502333305610999999999999999999999999999999999
Q gi|254780380|r 69 -----DQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 69 -----~~~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
T Consensus 74 ~~~~~~~~~p~~~~~~~~-~~~~DG----NnVDid~Em~~la~N~l~Y~al~~~l~~~f~~l~~vI 134 (135)
T PRK12622 74 KELGYLDVKPHRMLDHLS-TLNNNG----NNVDIDSEMKALVQNQMMYHLFTNIQAHHFKSVNIVI 134 (135)
T ss_pred CCCCCCCCCEEEEECCCC-CCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 777755565046407887-667999----8758899999999999999999999998999999985