HHsearch alignment for GI: 254780380 and conserved domain: PRK12623

>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=99.43  E-value=1.1e-12  Score=84.89  Aligned_cols=113  Identities=22%  Similarity=0.315  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CC-----CEECC--CCCCCCCCC
Q ss_conf             88852156899999998988875312555566754332011000123432210475-42-----10002--654310001
Q gi|254780380|r    6 ASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGV-RV-----KKIGV--DQSTFVEEF   77 (134)
Q Consensus         6 ~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv-~~-----~~i~~--~~~~~~~~y   77 (134)
T Consensus        11 ~tf~ll~~aLd~~~~Rq~vIa~NIANadTPg-------YKa~dv~Fe~~L~~a~~~~~l~~T~~~Hi~~~~~~~~~~~~~   83 (131)
T PRK12623         11 LTYDLLKKGLDASSYRGKVISNNIANVNTKD-------YKRHYVTFEETLKDNLDNLELKTTNEKHINDGVEFGQIKEKR   83 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             5899999999999999999986032168999-------876558699999874425876557712037877878731685


Q ss_pred             CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             43211125023333056109999999999999999999999999999999999
Q gi|254780380|r   78 DPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLD  130 (134)
Q Consensus        78 ~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~  130 (134)
T Consensus        84 ~~~~~~-r~D----GNnVDid~Em~~laeN~l~Y~a~~~~l~~k~~~lk~aI~  131 (131)
T PRK12623         84 DESTSM-RTD----GNNVDIDNEMVNQAANTLMYNALITQLNNRLATTRYIIN  131 (131)
T ss_pred             CCCCCC-CCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             689986-899----986779999999999999999999999989999998629