HHsearch alignment for GI: 254780380 and conserved domain: PRK12623
>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=99.43 E-value=1.1e-12 Score=84.89 Aligned_cols=113 Identities=22% Similarity=0.315 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CC-----CEECC--CCCCCCCCC
Q ss_conf 88852156899999998988875312555566754332011000123432210475-42-----10002--654310001
Q gi|254780380|r 6 ASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGV-RV-----KKIGV--DQSTFVEEF 77 (134)
Q Consensus 6 ~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv-~~-----~~i~~--~~~~~~~~y 77 (134)
T Consensus 11 ~tf~ll~~aLd~~~~Rq~vIa~NIANadTPg-------YKa~dv~Fe~~L~~a~~~~~l~~T~~~Hi~~~~~~~~~~~~~ 83 (131)
T PRK12623 11 LTYDLLKKGLDASSYRGKVISNNIANVNTKD-------YKRHYVTFEETLKDNLDNLELKTTNEKHINDGVEFGQIKEKR 83 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 5899999999999999999986032168999-------876558699999874425876557712037877878731685
Q ss_pred CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43211125023333056109999999999999999999999999999999999
Q gi|254780380|r 78 DPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLD 130 (134)
Q Consensus 78 ~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~ 130 (134)
T Consensus 84 ~~~~~~-r~D----GNnVDid~Em~~laeN~l~Y~a~~~~l~~k~~~lk~aI~ 131 (131)
T PRK12623 84 DESTSM-RTD----GNNVDIDNEMVNQAANTLMYNALITQLNNRLATTRYIIN 131 (131)
T ss_pred CCCCCC-CCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 689986-899----986779999999999999999999999989999998629