HHsearch alignment for GI: 254780380 and conserved domain: PRK12626
>PRK12626 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=99.40 E-value=3.6e-12 Score=82.24 Aligned_cols=117 Identities=21% Similarity=0.349 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-----CCCCC---E-------
Q ss_conf 90478888521568999999989888753125555667543320110001234322104-----75421---0-------
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSG-----GVRVK---K------- 65 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~-----gv~~~---~------- 65 (134)
T Consensus 2 ~~~ld~~~~~~~~AL~lR~~RqevlAsNIANadTPg-------YKArDldFe~~L~~al~~~~~~~~~~~~~~l~~~~~~ 74 (162)
T PRK12626 2 LDKLDAEFAFGRQALDVRAYRQELLSSNIANADTPG-------YRARDVDFASTLARALKQTDGGAAAGNAAQLPMAQPA 74 (162)
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC-------CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 347787736109999999999999985001378999-------8643587999999998621355555531001211223
Q ss_pred ---------------EC------CCC----CCCCCCC-CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------------00------265----4310001-432111250233330561099999999999999999999999
Q gi|254780380|r 66 ---------------IG------VDQ----STFVEEF-DPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIK 119 (134)
Q Consensus 66 ---------------i~------~~~----~~~~~~y-~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~ 119 (134)
T Consensus 75 ~~~~~~~l~~T~~~Hl~~~~~~~~~~~~~~~~~~~~yR~p~q~s~DGN------tVDld~E~a~faeN~l~YqAsl~fl~ 148 (162)
T PRK12626 75 GVTSGMSMVSTAPGHMAGTVKLIPTGGPSDDYGRAQYRMPLQPALDGN------TVDLDTERVQFADNALHYETGMTVMT 148 (162)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 444554313357421256433465667644445401116888688997------50469999999999999999999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780380|r 120 QSHDMMTTTLD 130 (134)
Q Consensus 120 ~~~~m~~~~l~ 130 (134)
T Consensus 149 ~ki~~l~~AI~ 159 (162)
T PRK12626 149 QQIKTMIAAIT 159 (162)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999975