HHsearch alignment for GI: 254780380 and conserved domain: PRK12630
>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=100.00 E-value=0 Score=292.20 Aligned_cols=131 Identities=38% Similarity=0.580 Sum_probs=121.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH------------HCCCCCCCEECC
Q ss_conf 90478888521568999999989888753125555667543320110001234322------------104754210002
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH------------GSGGVRVKKIGV 68 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~------------~~~gv~~~~i~~ 68 (134)
T Consensus 1 M~-~~~~~~Ia~sgl~Aqr~Rl~~ia~NiANa~tt~~~-~g~pYrrk~~vf~~~~~~~~~~~~~~~~~~~~gV~v~~i~~ 78 (143)
T PRK12630 1 MK-AFDSMRISASGLSAERLRMDTIASNISNASTTRTA-NGGPYRRKIAVFQENLNNELNKKNGAYEKKLYGVKAVGIVE 78 (143)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEC
T ss_conf 97-25578699999999999999999876535888999-99866444112547666654201455556777637755654
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 65431000143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r 69 DQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 69 ~~~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
T Consensus 79 d~~p~~~~YdP~hP~AD~~GyV~~PnVd~~~EMvdm~~AsRsYEANv~v~~~aK~m~~~tL~igk 143 (143)
T PRK12630 79 DKSPLRKVYDPSHPDADEEGYVSMPNVNVLNEMADMMASTRSYEANVTAMNAEKSMFSKALEIGK 143 (143)
T ss_pred CCCCCCCEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89850011289999978798884689888999999999999999999999999999999998559