HHsearch alignment for GI: 254780380 and conserved domain: PRK12630

>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=100.00  E-value=0  Score=292.20  Aligned_cols=131  Identities=38%  Similarity=0.580  Sum_probs=121.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH------------HCCCCCCCEECC
Q ss_conf             90478888521568999999989888753125555667543320110001234322------------104754210002
Q gi|254780380|r    1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH------------GSGGVRVKKIGV   68 (134)
Q Consensus         1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~------------~~~gv~~~~i~~   68 (134)
T Consensus         1 M~-~~~~~~Ia~sgl~Aqr~Rl~~ia~NiANa~tt~~~-~g~pYrrk~~vf~~~~~~~~~~~~~~~~~~~~gV~v~~i~~   78 (143)
T PRK12630          1 MK-AFDSMRISASGLSAERLRMDTIASNISNASTTRTA-NGGPYRRKIAVFQENLNNELNKKNGAYEKKLYGVKAVGIVE   78 (143)
T ss_pred             CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEC
T ss_conf             97-25578699999999999999999876535888999-99866444112547666654201455556777637755654


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             65431000143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r   69 DQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR  133 (134)
Q Consensus        69 ~~~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r  133 (134)
T Consensus        79 d~~p~~~~YdP~hP~AD~~GyV~~PnVd~~~EMvdm~~AsRsYEANv~v~~~aK~m~~~tL~igk  143 (143)
T PRK12630         79 DKSPLRKVYDPSHPDADEEGYVSMPNVNVLNEMADMMASTRSYEANVTAMNAEKSMFSKALEIGK  143 (143)
T ss_pred             CCCCCCCEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             89850011289999978798884689888999999999999999999999999999999998559