HHsearch alignment for GI: 254780380 and conserved domain: PRK12782
>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed.
Probab=100.00 E-value=0 Score=299.34 Aligned_cols=134 Identities=57% Similarity=0.898 Sum_probs=128.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCCCCEECCCCCCCCCCC
Q ss_conf 90478888521568999999989888753125555667543320110001234322---104754210002654310001
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH---GSGGVRVKKIGVDQSTFVEEF 77 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~---~~~gv~~~~i~~~~~~~~~~y 77 (134)
T Consensus 2 ~~~L~~~~~Ia~sgm~Aq~~Rl~~iAsNlANa~st~~~~~~~py~~k~v~f~~~~~~~~~~~gV~v~~i~~d~~p~~~~Y 81 (138)
T PRK12782 2 IDPLQASLRIASSGLEAQSTRLRVVSENLANAQSTGRTPGADPYQRKTVTFRAELDRAAGAALVRVKEIGVDTAPFRVEY 81 (138)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 70789999999999999999999999877424667879888764013223413103446777413413343898642344
Q ss_pred CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 432111250233330561099999999999999999999999999999999996469
Q gi|254780380|r 78 DPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD 134 (134)
Q Consensus 78 ~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r~ 134 (134)
T Consensus 82 dP~hP~Ad~~GyV~~pnVn~~~EMvdm~~AsRsYeANv~v~~tak~m~~~tL~i~rs 138 (138)
T PRK12782 82 DPGNPAADENGYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVSMTIDLLRS 138 (138)
T ss_pred CCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999876788546898889999999999999999999999999999999998509