HHsearch alignment for GI: 254780380 and conserved domain: TIGR01395

>TIGR01395 FlgC flagellar basal-body rod protein FlgC; InterPro: IPR006299 These sequences represent FlgC, one of several components of bacterial flagella. FlgC is part of the basal body. ; GO: 0019861 flagellum.

Probab=100.00  E-value=0  Score=310.26  Aligned_cols=129  Identities=40%  Similarity=0.616  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHHHHH-----HHH------------CCCCCCCEE
Q ss_conf             8888521568999999989888753125555667-5433201100012343-----221------------047542100
Q gi|254780380|r    5 IASAHIANSGLAVQSARMQIISENIANARTTGDT-PGSDPYRRKTISFEEV-----MHG------------SGGVRVKKI   66 (134)
Q Consensus         5 ~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~-~~~~~y~~~~v~~~~~-----~~~------------~~gv~~~~i   66 (134)
T Consensus         1 ~~~f~v~asaL~AQ~~Rmnv~ssNlANA~s~~~~q~~g~pyrr~~~vF~~~~~~~~~~~~~~~~~~~~~~~~~~V~V~~v   80 (147)
T TIGR01395         1 LSIFNVSASALSAQRVRMNVVSSNLANADSTRTPQAEGDPYRRRRPVFEAEVNKEPLSKILYSSDEVSGGAISGVKVAKV   80 (147)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHCCCCCCCCCEEEEE
T ss_conf             95203454467777767766553220333435778888654684015876664755566775630004789775245542


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0265431000143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r   67 GVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR  133 (134)
Q Consensus        67 ~~~~~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r  133 (134)
T Consensus        81 ~~d~~pf~~~YdP~hP~AD~~GYV~~PNVn~~~EMVdmi~A~RsYeANv~v~~~~K~m~~~tL~~~~  147 (147)
T TIGR01395        81 VEDDSPFKLVYDPTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMLLRTLEIGR  147 (147)
T ss_pred             EECCCCCCCEECCCCCCCCCCCCEECCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             2268888612477487778778470585585432321120024788999999999999999999709