HHsearch alignment for GI: 254780380 and conserved domain: TIGR01396

>TIGR01396 FlgB flagellar basal-body rod protein FlgB; InterPro: IPR006300 Many bacterial species swim actively by means of flagella. The flagella organelle is made of three parts: the basal body, the hook and the filament. The basal body consists of four rings (L,P,S, and M) mounted on a central rod . In Salmonella typhimurium and related organisms the rod has been shown to consist of four different, yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB, flgC, and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. These sequences represent FlgB, one of several components of bacterial flagella. FlgB is part of the basal body.; GO: 0019861 flagellum.
Probab=96.42  E-value=0.018  Score=32.14  Aligned_cols=112  Identities=22%  Similarity=0.292  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC----CC---------CEECCCC--
Q ss_conf             88852156899999998988875312555566754332011000123432210475----42---------1000265--
Q gi|254780380|r    6 ASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGV----RV---------KKIGVDQ--   70 (134)
Q Consensus         6 ~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv----~~---------~~i~~~~--   70 (134)
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (134)
T TIGR01396         3 RALGLLQKALDLRSLRQEVLANNIANADTPG-------YKAKDLSFEAELKKALDKERDSNLTLALTDTRPRHLNAEGSL   75 (134)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             1044677776577776666654310035665-------310110278888887641000000000135542101210000


Q ss_pred             ----CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ----43100014321112502333305610999999999999999999999999999999999
Q gi|254780380|r   71 ----STFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL  129 (134)
Q Consensus        71 ----~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l  129 (134)
T Consensus        76 ~~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (134)
T TIGR01396        76 GYLLVEPSLLLDLPT-----QLKNDGNNVDLDSEMAELAKNSLLYQALLSFLNGKFKGLNSVL  133 (134)
T ss_pred             CCCCCCCCEEECCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             122233200001221-----0013565100357788877656789999998765544455431