HHsearch alignment for GI: 254780380 and conserved domain: TIGR03506
>TIGR03506 FlgEFG_subfam fagellar hook-basal body proteins. This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog HMMs, TIGR02489, TIGR02490 and TIGR00488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.
Probab=99.72 E-value=4.2e-18 Score=112.90 Aligned_cols=40 Identities=40% Similarity=0.588 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 88521568999999989888753125555667543320110001234
Q gi|254780380|r 7 SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEE 53 (134)
Q Consensus 7 ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~ 53 (134)
T Consensus 2 sly~a~sgm~a~~~~l~visnNlAN~nT~G-------fK~~~~~F~~ 41 (231)
T TIGR03506 2 ALYTALSGLNAQSKALDVIANNIANANTTG-------FKASRAEFSD 41 (231)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-------HCCCCCCHHH
T ss_conf 489999999999986788888888777644-------3547241788