HHsearch alignment for GI: 254780380 and conserved domain: TIGR03506

>TIGR03506 FlgEFG_subfam fagellar hook-basal body proteins. This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog HMMs, TIGR02489, TIGR02490 and TIGR00488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.
Probab=99.72  E-value=4.2e-18  Score=112.90  Aligned_cols=40  Identities=40%  Similarity=0.588  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             88521568999999989888753125555667543320110001234
Q gi|254780380|r    7 SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEE   53 (134)
Q Consensus         7 ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~   53 (134)
T Consensus         2 sly~a~sgm~a~~~~l~visnNlAN~nT~G-------fK~~~~~F~~   41 (231)
T TIGR03506         2 ALYTALSGLNAQSKALDVIANNIANANTTG-------FKASRAEFSD   41 (231)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-------HCCCCCCHHH
T ss_conf             489999999999986788888888777644-------3547241788