Query gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 134
No_of_seqs 128 out of 1991
Neff 6.5
Searched_HMMs 39220
Date Sun May 29 18:34:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780380.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01395 FlgC flagellar basal 100.0 0 0 310.3 7.0 129 5-133 1-147 (147)
2 PRK12782 flgC flagellar basal 100.0 0 0 299.3 11.7 134 1-134 2-138 (138)
3 PRK12630 flgC flagellar basal 100.0 0 0 292.2 11.6 131 1-133 1-143 (143)
4 PRK12631 flgC flagellar basal 100.0 0 0 290.5 11.2 131 1-133 1-138 (138)
5 PRK12628 flgC flagellar basal 100.0 0 0 287.8 11.2 131 1-133 1-140 (140)
6 PRK12629 flgC flagellar basal 100.0 0 0 286.5 11.5 131 1-133 1-135 (135)
7 COG1558 FlgC Flagellar basal b 100.0 0 0 286.5 9.7 131 2-133 1-137 (137)
8 PRK05681 flgC flagellar basal 100.0 0 0 283.7 11.0 132 1-134 1-139 (139)
9 PRK06802 flgC flagellar basal 100.0 0 0 281.0 11.6 130 1-133 1-140 (141)
10 PRK12632 flgC flagellar basal 100.0 0 0 281.5 11.0 126 1-133 1-129 (130)
11 TIGR02488 flgG_G_neg flagellar 100.0 9.9E-32 2.5E-36 183.3 7.3 118 7-131 1-262 (263)
12 COG4786 FlgG Flagellar basal b 99.9 1.8E-26 4.5E-31 156.2 9.6 50 84-133 216-265 (265)
13 PRK12636 flgG flagellar basal 99.9 2.3E-25 5.7E-30 150.5 10.2 49 85-133 215-263 (263)
14 PRK12816 flgG flagellar basal 99.9 6.7E-25 1.7E-29 148.0 10.0 49 85-133 216-264 (264)
15 PRK12691 flgG flagellar basal 99.9 1.1E-24 2.8E-29 146.9 9.6 49 85-133 214-262 (262)
16 PRK12693 flgG flagellar basal 99.9 1.6E-24 4E-29 146.1 9.9 48 85-132 214-261 (261)
17 PRK12817 flgG flagellar basal 99.9 1.7E-24 4.3E-29 145.9 9.5 49 85-133 213-261 (261)
18 PRK12694 flgG flagellar basal 99.9 3.6E-24 9.3E-29 144.2 9.4 47 85-131 214-260 (260)
19 PRK12818 flgG flagellar basal 99.9 5.9E-24 1.5E-28 143.1 10.2 48 86-133 206-254 (255)
20 PRK12692 flgG flagellar basal 99.9 5E-24 1.3E-28 143.5 9.5 49 85-133 214-262 (262)
21 PRK12640 flgF flagellar basal 99.9 6.7E-24 1.7E-28 142.8 9.9 48 86-133 197-244 (246)
22 PRK12641 flgF flagellar basal 99.9 1.5E-23 3.7E-28 141.1 10.1 49 85-133 201-249 (252)
23 PRK12689 flgF flagellar basal 99.9 1.3E-23 3.3E-28 141.4 9.6 49 85-133 201-250 (253)
24 PRK12819 flgG flagellar basal 99.9 1.7E-23 4.3E-28 140.8 9.1 49 85-133 208-257 (257)
25 PRK12690 flgF flagellar basal 99.9 3.9E-23 9.8E-28 138.9 10.1 49 85-133 188-237 (237)
26 PRK12642 flgF flagellar basal 99.9 4.6E-23 1.2E-27 138.5 10.4 48 85-132 190-237 (241)
27 PRK05682 flgE flagellar hook p 99.8 3.6E-21 9.2E-26 128.7 6.1 47 86-132 368-414 (414)
28 PRK06803 flgE flagellar hook p 99.8 1.4E-20 3.7E-25 125.7 4.6 46 86-131 352-397 (398)
29 TIGR03506 FlgEFG_subfam fagell 99.7 4.2E-18 1.1E-22 112.9 5.1 40 7-53 2-41 (231)
30 TIGR02490 flgF flagellar basal 99.7 4.6E-17 1.2E-21 107.5 7.9 57 77-133 191-253 (254)
31 PRK05680 flgB flagellar basal 99.6 2.4E-15 6.2E-20 98.6 10.9 120 1-133 2-137 (137)
32 PRK08425 flgE flagellar hook p 99.6 1.3E-16 3.4E-21 105.2 3.1 49 85-133 668-716 (716)
33 PRK06003 flgB flagellar basal 99.6 1.1E-14 2.7E-19 95.3 10.5 117 1-129 1-124 (126)
34 PRK12621 flgB flagellar basal 99.6 1.7E-14 4.3E-19 94.3 10.9 122 1-133 1-135 (136)
35 PRK05841 flgE flagellar hook p 99.6 6.3E-16 1.6E-20 101.7 3.0 49 85-133 557-605 (605)
36 PRK12627 flgB flagellar basal 99.6 5.6E-14 1.4E-18 91.6 11.1 119 1-134 2-128 (128)
37 PRK12637 flgE flagellar hook p 99.5 2.4E-15 6.2E-20 98.7 2.0 46 87-132 428-473 (473)
38 PRK12620 flgB flagellar basal 99.5 1.6E-13 4.1E-18 89.3 10.9 114 3-129 4-129 (132)
39 COG1815 FlgB Flagellar basal b 99.5 1.1E-13 2.8E-18 90.1 10.0 116 1-130 1-131 (133)
40 COG1749 FlgE Flagellar hook pr 99.5 5E-15 1.3E-19 97.0 2.1 49 85-133 375-423 (423)
41 PRK12625 flgB flagellar basal 99.5 3.4E-13 8.6E-18 87.6 10.8 115 3-129 4-129 (132)
42 PRK12685 flgB flagellar basal 99.5 3.6E-13 9.1E-18 87.4 10.9 110 3-129 4-113 (116)
43 PRK12619 flgB flagellar basal 99.5 7.1E-13 1.8E-17 85.9 10.8 114 3-129 4-127 (130)
44 PRK12623 flgB flagellar basal 99.4 1.1E-12 2.9E-17 84.9 9.8 113 6-130 11-131 (131)
45 PRK12622 flgB flagellar basal 99.4 2E-12 5.1E-17 83.6 10.9 117 1-129 1-134 (135)
46 PRK12626 flgB flagellar basal 99.4 3.6E-12 9.3E-17 82.2 10.4 117 1-130 2-159 (162)
47 PRK12624 flgB flagellar basal 99.4 3.2E-12 8.3E-17 82.5 10.1 115 4-130 7-141 (143)
48 PRK06797 flgB flagellar basal 99.4 1.8E-12 4.6E-17 83.8 7.9 104 8-124 5-128 (135)
49 PRK07182 flgB flagellar basal 99.4 8.3E-12 2.1E-16 80.4 10.5 114 3-129 4-145 (148)
50 PRK06004 flgB flagellar basal 99.2 6.5E-11 1.7E-15 75.8 9.7 106 12-129 3-123 (126)
51 COG4787 FlgF Flagellar basal b 99.2 2.3E-10 5.9E-15 72.9 9.2 48 87-134 203-250 (251)
52 PRK07739 flgK flagellar hook-a 99.2 2.1E-11 5.3E-16 78.4 3.4 40 91-130 454-493 (500)
53 PRK08471 flgK flagellar hook-a 99.1 2.2E-10 5.7E-15 73.0 8.0 43 91-133 570-612 (612)
54 pfam06429 DUF1078 Domain of un 99.1 1.4E-10 3.5E-15 74.1 5.3 39 93-131 1-39 (39)
55 PRK07521 flgK flagellar hook-a 99.0 1.6E-10 4E-15 73.8 3.2 42 92-133 441-482 (482)
56 TIGR02489 flgE_epsilon flagell 99.0 5.5E-11 1.4E-15 76.2 -0.4 47 87-133 831-877 (877)
57 PRK07739 flgK flagellar hook-a 99.0 1.6E-09 4.2E-14 68.5 6.2 48 1-55 1-48 (500)
58 PRK07521 flgK flagellar hook-a 98.9 1.8E-09 4.7E-14 68.3 6.0 55 1-66 1-55 (482)
59 PRK12715 flgK flagellar hook-a 98.9 3.9E-09 9.9E-14 66.6 5.9 44 90-133 606-649 (649)
60 PRK06799 flgK flagellar hook-a 98.9 1E-09 2.6E-14 69.6 2.9 42 91-132 390-431 (431)
61 PRK06665 flgK flagellar hook-a 98.8 1.6E-08 4.2E-13 63.4 8.2 40 92-131 586-625 (628)
62 PRK08147 flgK flagellar hook-a 98.8 1.1E-08 2.9E-13 64.2 7.3 42 91-132 506-547 (547)
63 TIGR02492 flgK_ends flagellar 98.8 5.2E-09 1.3E-13 66.0 5.3 45 87-131 451-495 (495)
64 PRK08471 flgK flagellar hook-a 98.8 6.7E-09 1.7E-13 65.4 5.8 47 1-54 1-47 (612)
65 PRK12714 flgK flagellar hook-a 98.8 7.2E-09 1.8E-13 65.2 6.0 45 89-133 580-624 (624)
66 PRK05841 flgE flagellar hook p 98.8 2.5E-09 6.3E-14 67.6 3.3 46 4-56 1-46 (605)
67 PRK06799 flgK flagellar hook-a 98.8 8.9E-09 2.3E-13 64.7 5.8 44 4-54 2-45 (431)
68 PRK08425 flgE flagellar hook p 98.8 1.9E-09 4.8E-14 68.3 2.1 46 4-56 1-46 (716)
69 PRK07191 flgK flagellar hook-a 98.8 2.2E-08 5.7E-13 62.7 6.8 40 92-131 416-455 (456)
70 COG1749 FlgE Flagellar hook pr 98.7 2.5E-09 6.4E-14 67.6 1.2 45 4-55 1-45 (423)
71 PRK07191 flgK flagellar hook-a 98.7 2E-08 5.2E-13 62.9 5.9 56 6-68 2-64 (456)
72 PRK08147 flgK flagellar hook-a 98.7 1.7E-08 4.2E-13 63.3 5.2 58 4-68 1-65 (547)
73 PRK12714 flgK flagellar hook-a 98.7 5.3E-09 1.3E-13 65.9 2.4 43 6-55 2-44 (624)
74 PRK06945 flgK flagellar hook-a 98.7 2.4E-08 6.2E-13 62.5 5.8 43 90-132 607-649 (649)
75 PRK08871 flgK flagellar hook-a 98.7 2E-08 5.1E-13 63.0 5.3 43 90-132 584-626 (626)
76 PRK08871 flgK flagellar hook-a 98.7 8.8E-08 2.2E-12 59.6 8.1 57 5-68 3-66 (626)
77 PRK06945 flgK flagellar hook-a 98.7 8.7E-08 2.2E-12 59.6 7.5 43 6-55 3-45 (649)
78 PRK12637 flgE flagellar hook p 98.7 1.3E-08 3.4E-13 63.8 2.7 43 7-56 2-44 (473)
79 PRK12715 flgK flagellar hook-a 98.6 1.2E-08 3E-13 64.1 2.4 56 6-68 2-64 (649)
80 PRK06665 flgK flagellar hook-a 98.6 6.2E-08 1.6E-12 60.4 5.8 46 1-53 1-46 (628)
81 COG1256 FlgK Flagellar hook-as 98.6 1.9E-08 4.8E-13 63.1 3.0 41 92-132 511-551 (552)
82 PRK05683 flgK flagellar hook-a 98.6 7.9E-08 2E-12 59.9 5.7 41 90-130 634-674 (676)
83 COG1256 FlgK Flagellar hook-as 98.6 8.9E-08 2.3E-12 59.6 5.9 61 1-69 1-68 (552)
84 PRK05683 flgK flagellar hook-a 98.6 2.6E-07 6.5E-12 57.2 7.5 43 6-55 2-44 (676)
85 TIGR02492 flgK_ends flagellar 98.6 2.9E-08 7.3E-13 62.1 2.3 56 6-68 1-69 (495)
86 PRK12643 flgF flagellar basal 98.5 9.3E-08 2.4E-12 59.5 3.8 44 4-54 1-44 (209)
87 pfam00460 Flg_bb_rod Flagella 98.3 4.5E-07 1.1E-11 56.0 2.6 30 8-37 1-30 (31)
88 TIGR02489 flgE_epsilon flagell 97.7 3.2E-06 8.1E-11 51.6 -1.4 46 4-56 1-46 (877)
89 TIGR01396 FlgB flagellar basal 96.4 0.018 4.7E-07 32.1 7.4 112 6-129 3-133 (134)
90 PRK12804 flagellin; Provisiona 94.0 0.16 4.2E-06 27.2 5.7 42 92-133 266-307 (307)
91 PRK12802 flagellin; Provisiona 92.7 0.38 9.7E-06 25.3 5.8 46 88-133 237-282 (282)
92 COG1344 FlgL Flagellin and rel 92.6 0.35 8.9E-06 25.5 5.5 43 91-133 318-360 (360)
93 PRK12807 flagellin; Provisiona 91.7 0.57 1.4E-05 24.4 5.7 43 91-133 245-287 (287)
94 PRK08869 flagellin; Reviewed 91.3 0.49 1.2E-05 24.8 5.1 43 91-133 335-377 (377)
95 PRK12805 flagellin; Provisiona 90.9 0.65 1.7E-05 24.1 5.3 44 91-134 244-287 (287)
96 PRK12803 flagellin; Provisiona 90.6 0.5 1.3E-05 24.7 4.6 41 93-133 295-335 (335)
97 PRK06819 flagellin; Validated 90.3 0.58 1.5E-05 24.4 4.7 42 92-133 330-371 (371)
98 PRK13589 flagellin; Provisiona 90.1 0.61 1.5E-05 24.3 4.6 40 94-133 534-573 (573)
99 PRK13588 flagellin B; Provisio 89.9 0.69 1.8E-05 24.0 4.8 40 94-133 475-514 (514)
100 PRK08411 flagellin; Reviewed 89.3 0.75 1.9E-05 23.8 4.6 40 94-133 534-573 (573)
101 PRK08026 flagellin; Validated 89.2 0.83 2.1E-05 23.6 4.8 41 93-133 525-565 (566)
102 PRK12808 flagellin; Provisiona 89.2 0.77 2E-05 23.8 4.6 41 93-133 420-460 (460)
103 pfam00700 Flagellin_C Bacteria 88.8 1.1 2.9E-05 22.9 5.3 38 93-132 47-84 (84)
104 PRK12806 flagellin; Provisiona 84.1 2.2 5.6E-05 21.4 4.6 41 93-133 434-474 (475)
105 PRK06663 flagellar hook-associ 82.1 2.4 6E-05 21.2 4.2 41 91-133 380-420 (420)
106 PRK12584 flagellin A; Reviewed 82.1 2.5 6.4E-05 21.1 4.3 40 93-132 470-509 (510)
107 PRK12687 flagellin; Reviewed 81.4 3.9 9.9E-05 20.1 5.3 43 91-133 269-311 (311)
108 PRK08412 flgL flagellar hook-a 77.2 4.1 0.0001 20.0 4.1 33 93-125 740-772 (777)
109 PRK07701 flgL flagellar hook-a 76.2 5.6 0.00014 19.3 4.6 41 91-133 261-301 (301)
110 PRK08870 flgL flagellar hook-a 74.3 5 0.00013 19.5 3.9 33 92-124 365-397 (403)
111 PRK12717 flgL flagellar hook-a 74.2 5 0.00013 19.6 3.9 31 94-124 487-517 (523)
112 PRK08027 flgL flagellar hook-a 57.3 15 0.00038 17.1 4.4 40 92-133 278-317 (317)
113 PRK07192 flgL flagellar hook-a 57.0 15 0.00038 17.1 3.8 34 91-124 266-299 (305)
114 PRK08073 flgL flagellar hook-a 51.7 18 0.00047 16.6 3.8 32 92-123 249-280 (287)
115 pfam00798 Arena_glycoprot Aren 42.4 26 0.00067 15.8 4.1 44 87-133 283-326 (473)
116 pfam12166 DUF3595 Protein of u 26.2 50 0.0013 14.4 4.3 41 90-134 365-405 (416)
117 TIGR01919 hisA-trpF bifunction 24.4 34 0.00087 15.3 1.0 24 84-107 174-197 (246)
No 1
>TIGR01395 FlgC flagellar basal-body rod protein FlgC; InterPro: IPR006299 These sequences represent FlgC, one of several components of bacterial flagella. FlgC is part of the basal body. ; GO: 0019861 flagellum.
Probab=100.00 E-value=0 Score=310.26 Aligned_cols=129 Identities=40% Similarity=0.616 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHHHHH-----HHH------------CCCCCCCEE
Q ss_conf 8888521568999999989888753125555667-5433201100012343-----221------------047542100
Q gi|254780380|r 5 IASAHIANSGLAVQSARMQIISENIANARTTGDT-PGSDPYRRKTISFEEV-----MHG------------SGGVRVKKI 66 (134)
Q Consensus 5 ~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~-~~~~~y~~~~v~~~~~-----~~~------------~~gv~~~~i 66 (134)
|++|+|++|||+||+.||+|||+||||++|+++. +++.||++++++|+.. +.. ..+|++.+|
T Consensus 1 ~~~f~v~asaL~AQ~~Rmnv~ssNlANA~s~~~~q~~g~pyrr~~~vF~~~~~~~~~~~~~~~~~~~~~~~~~~V~V~~v 80 (147)
T TIGR01395 1 LSIFNVSASALSAQRVRMNVVSSNLANADSTRTPQAEGDPYRRRRPVFEAEVNKEPLSKILYSSDEVSGGAISGVKVAKV 80 (147)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHCCCCCCCCCEEEEE
T ss_conf 95203454467777767766553220333435778888654684015876664755566775630004789775245542
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0265431000143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r 67 GVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 67 ~~~~~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
.+++.||+.+|||+||+||++|||++||||+++||||||+|+|+||||++||+++|+|+.++|+|||
T Consensus 81 ~~d~~pf~~~YdP~hP~AD~~GYV~~PNVn~~~EMVdmi~A~RsYeANv~v~~~~K~m~~~tL~~~~ 147 (147)
T TIGR01395 81 VEDDSPFKLVYDPTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMLLRTLEIGR 147 (147)
T ss_pred EECCCCCCCEECCCCCCCCCCCCEECCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 2268888612477487778778470585585432321120024788999999999999999999709
No 2
>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=100.00 E-value=0 Score=299.34 Aligned_cols=134 Identities=57% Similarity=0.898 Sum_probs=128.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCCCCEECCCCCCCCCCC
Q ss_conf 90478888521568999999989888753125555667543320110001234322---104754210002654310001
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH---GSGGVRVKKIGVDQSTFVEEF 77 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~---~~~gv~~~~i~~~~~~~~~~y 77 (134)
||+||++|+|++|||.||++||++||+||||++|++.++++.||+++.+.|+..++ +..+|++..|..+..|++.+|
T Consensus 2 ~~~L~~~~~Ia~sgm~Aq~~Rl~~iAsNlANa~st~~~~~~~py~~k~v~f~~~~~~~~~~~gV~v~~i~~d~~p~~~~Y 81 (138)
T PRK12782 2 IDPLQASLRIASSGLEAQSTRLRVVSENLANAQSTGRTPGADPYQRKTVTFRAELDRAAGAALVRVKEIGVDTAPFRVEY 81 (138)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 70789999999999999999999999877424667879888764013223413103446777413413343898642344
Q ss_pred CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 432111250233330561099999999999999999999999999999999996469
Q gi|254780380|r 78 DPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD 134 (134)
Q Consensus 78 ~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r~ 134 (134)
||+||+||++|||++||||+++||+||++|+|+||||+++|+++|+|++++|+|||+
T Consensus 82 dP~hP~Ad~~GyV~~pnVn~~~EMvdm~~AsRsYeANv~v~~tak~m~~~tL~i~rs 138 (138)
T PRK12782 82 DPGNPAADENGYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVSMTIDLLRS 138 (138)
T ss_pred CCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999876788546898889999999999999999999999999999999998509
No 3
>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional
Probab=100.00 E-value=0 Score=292.20 Aligned_cols=131 Identities=38% Similarity=0.580 Sum_probs=121.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH------------HCCCCCCCEECC
Q ss_conf 90478888521568999999989888753125555667543320110001234322------------104754210002
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH------------GSGGVRVKKIGV 68 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~------------~~~gv~~~~i~~ 68 (134)
|+ ||++|+||+|||.||+.||++||+||||++|+.+. .+.||++|.++|++.+. ...||++..|.+
T Consensus 1 M~-~~~~~~Ia~sgl~Aqr~Rl~~ia~NiANa~tt~~~-~g~pYrrk~~vf~~~~~~~~~~~~~~~~~~~~gV~v~~i~~ 78 (143)
T PRK12630 1 MK-AFDSMRISASGLSAERLRMDTIASNISNASTTRTA-NGGPYRRKIAVFQENLNNELNKKNGAYEKKLYGVKAVGIVE 78 (143)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEC
T ss_conf 97-25578699999999999999999876535888999-99866444112547666654201455556777637755654
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 65431000143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r 69 DQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 69 ~~~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
++.|++++|||+||+||++|||++||||+++||+||++|+|+||||+++|+++|+|++++|+|||
T Consensus 79 d~~p~~~~YdP~hP~AD~~GyV~~PnVd~~~EMvdm~~AsRsYEANv~v~~~aK~m~~~tL~igk 143 (143)
T PRK12630 79 DKSPLRKVYDPSHPDADEEGYVSMPNVNVLNEMADMMASTRSYEANVTAMNAEKSMFSKALEIGK 143 (143)
T ss_pred CCCCCCCEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89850011289999978798884689888999999999999999999999999999999998559
No 4
>PRK12631 flgC flagellar basal body rod protein FlgC; Provisional
Probab=100.00 E-value=0 Score=290.51 Aligned_cols=131 Identities=36% Similarity=0.551 Sum_probs=122.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-------HCCCCCCCEECCCCCCC
Q ss_conf 90478888521568999999989888753125555667543320110001234322-------10475421000265431
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH-------GSGGVRVKKIGVDQSTF 73 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~-------~~~gv~~~~i~~~~~~~ 73 (134)
|+ ||++|+|++|||.||++||++||+||||++|+++. .+.||+++.++|+..+. +..||++..|.+++.++
T Consensus 1 Ms-~~~~~~Ia~sgl~Aqr~Rm~via~NiANa~tt~~~-~g~~Yr~k~~vf~~~~~~~~~~~~~~~gV~v~~i~~~~~~~ 78 (138)
T PRK12631 1 MS-LFNIFDVAGSGMSAQSVRLNTTASNIANADSVSSS-VDKTYRARHPIFEAEMAKAQSQQQASQGVAVKGIVESDKPL 78 (138)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCEEEEHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
T ss_conf 96-26678699999999999999999877634767889-99987312211135543322036788874787776179861
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 000143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r 74 VEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 74 ~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
+++|||+||+||++|||++||||++.||+||++|+|+||||+++|+++|+|++++|+|||
T Consensus 79 ~~~YdP~hP~AD~~GyV~~pNVd~~~EMvdm~~A~RsYeANv~~~~~ak~m~~~aL~Igk 138 (138)
T PRK12631 79 LKEYSPDHPMADADGFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLRMGK 138 (138)
T ss_pred CCEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 112089999988788884489888999999999999999999999999999999997459
No 5
>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional
Probab=100.00 E-value=0 Score=287.84 Aligned_cols=131 Identities=27% Similarity=0.432 Sum_probs=122.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH---------HCCCCCCCEECCCCC
Q ss_conf 90478888521568999999989888753125555667543320110001234322---------104754210002654
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH---------GSGGVRVKKIGVDQS 71 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~---------~~~gv~~~~i~~~~~ 71 (134)
|+ ||++|+|++|||.||++||++||+||||++|+++.++ .||+++.+.|+.... ...||++..|.+++.
T Consensus 1 M~-l~~~~~Ia~sgm~Aqr~Rl~viasNiANa~t~~~~~~-~~Y~~k~~vf~~~~~~~~~~~~~~~~~gV~v~~I~~~~~ 78 (140)
T PRK12628 1 MS-LNAIFDIAASAMTAETVRLTTSAGNMSNANVEAGSPD-EVYQAKYPVFKSVQENANQWMGEQIKAGVKLDGIYESDA 78 (140)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCEEECCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC
T ss_conf 96-0778889999999999999999998863688888999-733531301344666554311555678748986663799
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 31000143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r 72 TFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 72 ~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
+++++|||+||+||++|||++||||+++||+||++|+|+||||+++|+++|+|++++|+|||
T Consensus 79 ~~~~~YdP~hP~Ad~~GyV~~pnVn~~~EMvdm~~AsRsYEANv~v~~~aK~M~~~aL~IGk 140 (140)
T PRK12628 79 EPHRRYDPNSPIADKDGFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQLGE 140 (140)
T ss_pred CCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 82203699999988898673489888999999999999999999999999999999986179
No 6
>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional
Probab=100.00 E-value=0 Score=286.51 Aligned_cols=131 Identities=27% Similarity=0.449 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH----HCCCCCCCEECCCCCCCCCC
Q ss_conf 90478888521568999999989888753125555667543320110001234322----10475421000265431000
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH----GSGGVRVKKIGVDQSTFVEE 76 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~----~~~gv~~~~i~~~~~~~~~~ 76 (134)
|+ +|++|+|++|||.||++||++||+||||++|+++. .+.+|+++.++|+.... +..+|++..|..++.+++++
T Consensus 1 Ms-~~~~~~Is~Sgl~Aqr~Rm~~ia~NiANa~t~~~~-~~~~yr~~~~vf~~~~~~~~~~~~~V~v~~i~~d~~~~~~~ 78 (135)
T PRK12629 1 MS-NLPIFDVAGSALHAQSVRLSTIASNLANADSVAGS-AEATYKPIEPIFQAQQSRQDPSLTSVNVKEITTTNAPPIRR 78 (135)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHC
T ss_conf 96-36577699998999999999999987746888989-99877640112564432457887866777754379850113
Q ss_pred CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r 77 FDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 77 y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
|||+||+||++|||++||||+++||+||++|+|+||||+.+|+++|+|++++|+|||
T Consensus 79 YdP~hP~AD~~GyV~~pnVn~~~EMvdm~~AsRsYEANv~~~~~aK~m~~~aL~igr 135 (135)
T PRK12629 79 YEPGHPLADADGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLTMGR 135 (135)
T ss_pred CCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 499999988898884689888999999999999999999999999999999998559
No 7
>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion]
Probab=100.00 E-value=0 Score=286.49 Aligned_cols=131 Identities=44% Similarity=0.664 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH---C---CCCCCCEECCCCCCCCC
Q ss_conf 04788885215689999999898887531255556675433201100012343221---0---47542100026543100
Q gi|254780380|r 2 DYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHG---S---GGVRVKKIGVDQSTFVE 75 (134)
Q Consensus 2 ~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~---~---~gv~~~~i~~~~~~~~~ 75 (134)
+.||++|+|++|||+||++||++||+||||++|+++.+++ ||+||.++|+..+.. . .||++..|.+|+.+++.
T Consensus 1 msl~~~~niagS~l~AQ~~RmnvissNiANa~St~~~~g~-pYrrk~vvF~~~~~~~~~~~~~~~VkV~~I~eD~s~~~~ 79 (137)
T COG1558 1 MSLFSIFNIAGSALSAQSLRLNVISSNIANADSTRTPDGG-PYRRKQVVFSAELFAPTGATGGAGVKVSKIVEDPSPFKL 79 (137)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCEE
T ss_conf 9216565255477788899989987643035445689998-437545676551345444578863589887606997500
Q ss_pred CCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r 76 EFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 76 ~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
+|||+||+||++|||++||||++.||+|||+|+|+||||+++|+++|+|++++|+|||
T Consensus 80 ~YdP~hP~Ad~~GYV~~PNVn~v~EM~dmisAsRsYeANv~v~~~~K~m~~~tL~i~~ 137 (137)
T COG1558 80 VYDPGHPDADAKGYVKMPNVNVVIEMVDMISASRSYEANVEVLNTAKSMMQKTLELGQ 137 (137)
T ss_pred EECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 1188998846367556587658999999999999899999999999999999997519
No 8
>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=100.00 E-value=0 Score=283.74 Aligned_cols=132 Identities=49% Similarity=0.757 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-------HCCCCCCCEECCCCCCC
Q ss_conf 90478888521568999999989888753125555667543320110001234322-------10475421000265431
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH-------GSGGVRVKKIGVDQSTF 73 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~-------~~~gv~~~~i~~~~~~~ 73 (134)
|+ ||++|+|++|||.||++||+++|+||||++|+++.+ +.||++|.++|+.... +..||++..|..++.++
T Consensus 1 M~-~~~~~~ia~sgl~aq~~rl~~~a~NiAN~~tt~t~~-g~pYr~k~vvf~~~~~~~~~~~~~~~gV~v~~i~~d~~~~ 78 (139)
T PRK05681 1 MS-LFSSFNIAGSGLSAQSQRLNVISSNIANADSTAGPD-GDPYRRKQVVFAAFGSAELDRGQGTGGVKVAKIVEDQSPF 78 (139)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCH
T ss_conf 95-388899999999999999999998553267778999-9876431245530331000246787765887774389742
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0001432111250233330561099999999999999999999999999999999996469
Q gi|254780380|r 74 VEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD 134 (134)
Q Consensus 74 ~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r~ 134 (134)
+++|||+||+||++|||++||||+++||+||++|+|+||||+++|+++|+|++++|+|||+
T Consensus 79 ~~~YdP~hP~AD~~GyV~~pNVd~~~Emvdm~~A~R~YeAN~~~~~~~k~m~~~~L~igk~ 139 (139)
T PRK05681 79 KLVYDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQS 139 (139)
T ss_pred HHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 2304789988886671542898889999999999999999999999999999999987439
No 9
>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=100.00 E-value=0 Score=280.97 Aligned_cols=130 Identities=28% Similarity=0.462 Sum_probs=115.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH----------CCCCCCCEECCCC
Q ss_conf 904788885215689999999898887531255556675433201100012343221----------0475421000265
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHG----------SGGVRVKKIGVDQ 70 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~----------~~gv~~~~i~~~~ 70 (134)
|+ ||++|+|++|||.||++||++||+||||++|+++.+ +.||+++.++|+..... ..+|++..+.+++
T Consensus 1 Ms-~~~~~~Ia~Sgl~Aqr~Rm~~ia~NiANa~tt~~~~-g~~y~~k~~vf~~~~~~~~~~~~~~~~~~~V~v~~i~~~~ 78 (141)
T PRK06802 1 MS-FNQIYRIAGSAMTAQTIRLNTVASNLANAESPAASA-ATVYKARSPVFSAVYSARTAADPRGVQSAQVQVLDVVEVG 78 (141)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCC
T ss_conf 96-077888999999999999999999887268889899-9866343332456553443113557788625887543589
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 431000143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r 71 STFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 71 ~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
.+++ +|||+||+||++|||++||||+++||+|||+|+|+||||+++|+++|+|++++|+|||
T Consensus 79 ~~~~-~YdP~hP~Ad~~GyV~~PnVn~~~EMvdm~~AsRsYeANv~~~~~aK~m~~~aL~IGk 140 (141)
T PRK06802 79 GSVQ-RYEPNNPLANPQGYVFYPDVNVVSEMADMMSASRSFETNVEVLNSVKSMQQSLLKLGE 140 (141)
T ss_pred CCHH-HCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7331-1599999989898884689898999999999999999999999999999999998637
No 10
>PRK12632 flgC flagellar basal body rod protein FlgC; Provisional
Probab=100.00 E-value=0 Score=281.48 Aligned_cols=126 Identities=42% Similarity=0.651 Sum_probs=119.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCCCCEECCCCCCCCCCC
Q ss_conf 90478888521568999999989888753125555667543320110001234322---104754210002654310001
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH---GSGGVRVKKIGVDQSTFVEEF 77 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~---~~~gv~~~~i~~~~~~~~~~y 77 (134)
|++||++|+|++|||.||++||++||+||||++|++ |+++.+.|+.... +.++|++..+..++.+++++|
T Consensus 1 M~d~~~~~~Ia~Sgl~Aq~~Rl~~iA~NiANa~t~~-------y~~k~v~f~~~~~~~~~~~~v~v~~v~~d~~~~~~~Y 73 (130)
T PRK12632 1 MTDFSKSLSVSASGMRAQALRLRHVSENIANADTPG-------YRRKTVSFQEERDFGDGVGLVSTGPVRLDRSELPRIY 73 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCEEEECCCCCCCCCCEEECCEECCCCCCCCCC
T ss_conf 903889999999999999999999998743368876-------4334440001245567877547535022776400024
Q ss_pred CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 43211125023333056109999999999999999999999999999999999646
Q gi|254780380|r 78 DPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 78 ~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
||+||+||++|||++||||+++||+||++|+|+||||+++|+++|+|++++|+|||
T Consensus 74 dP~hP~AD~~GyV~~pnVd~~~EMvdm~~AsRsYeANv~v~~t~k~M~~~~L~i~r 129 (130)
T PRK12632 74 DPSHPLADETGYYDGSNVDLVIEIADAREAQRSYEANLRMFDQARQMSSSLLDLLR 129 (130)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999988667736899788999999999999999999999999999999999842
No 11
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG; InterPro: IPR012834 This family consists of the FlgG protein of the flagellar apparatus in the proteobacteria and spirochetes. The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod . The rod consists of about 26 subunits of flgG in the distal portion, and flgB, flgC and flgF are thought to build up the proximal portion of the rod with about 6 subunits each.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0009426 flagellin-based flagellum basal body distal rod.
Probab=99.97 E-value=9.9e-32 Score=183.27 Aligned_cols=118 Identities=32% Similarity=0.442 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC----------------------CCCC--
Q ss_conf 8852156899999998988875312555566754332011000123432210----------------------4754--
Q gi|254780380|r 7 SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS----------------------GGVR-- 62 (134)
Q Consensus 7 ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~----------------------~gv~-- 62 (134)
+|+||++||.||.+||+||||||||+||+| |||.+..|+.++... .|||
T Consensus 1 aL~tAaTGM~AQQtn~~VIsNNLANVnT~G-------FKk~RA~FEDL~YQ~~r~pG~q~~~~~t~~P~G~~~G~GVr~~ 73 (263)
T TIGR02488 1 ALWTAATGMNAQQTNMDVISNNLANVNTTG-------FKKDRAEFEDLLYQTVRQPGAQSSEQQTILPVGVQVGLGVRVV 73 (263)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCEEECCCEEEE
T ss_conf 930336558887357888776331102344-------1212367655747731258888777630034662435850423
Q ss_pred -------------------------------------------------------------------------CCE-ECC
Q ss_conf -------------------------------------------------------------------------210-002
Q gi|254780380|r 63 -------------------------------------------------------------------------VKK-IGV 68 (134)
Q Consensus 63 -------------------------------------------------------------------------~~~-i~~ 68 (134)
... |..
T Consensus 74 at~k~~~QG~lq~TgN~LDlAI~G~GFFQv~~pDG~~~YTR~G~F~~n~~G~lVt~~aq~Gy~l~P~ItiP~~A~~ni~v 153 (263)
T TIGR02488 74 ATQKLFTQGSLQNTGNDLDLAIEGEGFFQVLLPDGTTAYTRDGAFKLNAEGQLVTSSAQDGYPLQPEITIPENATSNITV 153 (263)
T ss_pred EEEEEEECCCEECCCCCCCEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCEECCCCCCCCEECCEEECCCCCCEEEEE
T ss_conf 57666416720105876004786483389866998761012467460899527644346896536624718887010698
Q ss_pred CC--------------------------------------------CCCCCCCCCCCCC--CCHHHHHHCCCCHHHHHHH
Q ss_conf 65--------------------------------------------4310001432111--2502333305610999999
Q gi|254780380|r 69 DQ--------------------------------------------STFVEEFDPGHPV--ANASGIVKYPNVNVLVETA 102 (134)
Q Consensus 69 ~~--------------------------------------------~~~~~~y~P~~p~--Ad~~G~v~~snVd~~~Em~ 102 (134)
.. +..+.+-.|+.+. --.+|+||.||||+++|||
T Consensus 154 ~~dG~VsV~~~~~~~~~~~GQi~la~FiNPAGL~a~G~NLf~eT~ASG~p~~g~Pg~~G~G~l~QG~LE~SNV~vV~Emv 233 (263)
T TIGR02488 154 GSDGEVSVRQGGQTEPQEVGQITLATFINPAGLEAVGENLFRETPASGDPIVGTPGLDGFGKLKQGFLEASNVNVVQEMV 233 (263)
T ss_pred CCCCEEEEEECCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCHHHHHH
T ss_conf 67878999837897200010101121015434773456410157886887688888887338881616302674456664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999996
Q gi|254780380|r 103 DMRETNRLYMANLQTIKQSHDMMTTTLDL 131 (134)
Q Consensus 103 ~m~~a~r~yean~~~~~~~~~m~~~~l~i 131 (134)
|||++||+||.|.|+|+++|+|++.+-.+
T Consensus 234 dmI~aQRAYE~NSK~i~asD~Mlq~~~~~ 262 (263)
T TIGR02488 234 DMITAQRAYEMNSKVIQASDQMLQTVSQL 262 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 23368889877538888799999999612
No 12
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]
Probab=99.94 E-value=1.8e-26 Score=156.16 Aligned_cols=50 Identities=38% Similarity=0.538 Sum_probs=47.0
Q ss_pred CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 25023333056109999999999999999999999999999999999646
Q gi|254780380|r 84 ANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 84 Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
+-.+||+|.||||+++||++||++||+||+|.|+|+++|+|++++..++|
T Consensus 216 ~i~QG~lE~SNVn~v~EMt~mI~aqRayE~nsK~i~~~D~m~~~~~n~~~ 265 (265)
T COG4786 216 AIRQGFLEASNVNVVEEMTDMIEAQRAYEANSKVIQTADEMLGKANNLLR 265 (265)
T ss_pred EEEECCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 27864121205679999999999999999887886658999999986549
No 13
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional
Probab=99.93 E-value=2.3e-25 Score=150.45 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=47.2
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5023333056109999999999999999999999999999999999646
Q gi|254780380|r 85 NASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 85 d~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
-.+||+|.||||+++||++||++||+||+|.|+|+++|+|++++++|.|
T Consensus 215 v~qG~LE~SNVn~~~Emv~mI~~qRaye~n~K~i~~~De~~~~~~nl~R 263 (263)
T PRK12636 215 IQSGALEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKR 263 (263)
T ss_pred EECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 6038476134759999999999999999998899999999999997459
No 14
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.92 E-value=6.7e-25 Score=148.01 Aligned_cols=49 Identities=29% Similarity=0.413 Sum_probs=47.2
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5023333056109999999999999999999999999999999999646
Q gi|254780380|r 85 NASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 85 d~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
-.+||+|.||||+++||++||++||+||+|.|+|+++|+|++++.+|.|
T Consensus 216 v~qG~LE~SNV~~~~EMv~mI~~qR~fe~~~K~i~t~De~~~~~~nl~R 264 (264)
T PRK12816 216 VLQGFLEMSNVSIVEEMVTMIVAQRAYEINSKAIQTSDNMLGTANNLKR 264 (264)
T ss_pred EECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8328476223659999999999999999999999999999999986269
No 15
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.92 E-value=1.1e-24 Score=146.87 Aligned_cols=49 Identities=31% Similarity=0.428 Sum_probs=46.9
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5023333056109999999999999999999999999999999999646
Q gi|254780380|r 85 NASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 85 d~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
-.+||+|.||||++.||++||++||+||+|.|+|+++|+|++++.+++|
T Consensus 214 v~qG~LE~SNVd~~~Em~~mI~~qRaye~n~k~i~t~De~~~~a~nllR 262 (262)
T PRK12691 214 IRQGYLEASNVDVVKEITDLITAQRAYEMNSKVISAADEMLQTTSKNLR 262 (262)
T ss_pred EECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8438565344659999999999999999999999999999999998668
No 16
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=99.91 E-value=1.6e-24 Score=146.11 Aligned_cols=48 Identities=29% Similarity=0.390 Sum_probs=45.4
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 502333305610999999999999999999999999999999999964
Q gi|254780380|r 85 NASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132 (134)
Q Consensus 85 d~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~ 132 (134)
-.+||+|.||||++.||++||++||+||+|.|+|+++|+|++++.+|+
T Consensus 214 v~qG~LE~SNVd~~~Em~~mI~~qR~ye~n~K~i~t~De~l~~~~nll 261 (261)
T PRK12693 214 LRQGFLETSNVNVVEELVNMITGQRAYEMNSKAISTADQMLQYVNQLL 261 (261)
T ss_pred EECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 853856544466999999999999999999789999999999998629
No 17
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.91 E-value=1.7e-24 Score=145.95 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=46.6
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5023333056109999999999999999999999999999999999646
Q gi|254780380|r 85 NASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 85 d~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
-.+||+|.||||++.||++||++||+||+|.|+|+++|+|++.+.+|.|
T Consensus 213 v~qG~LE~SNV~~~~EMv~li~~qRaye~n~k~i~t~Dem~~~~nnlrr 261 (261)
T PRK12817 213 ILQGYLENSNVDLGKEMTDMIITQRAFQLSSKGIKTADEMWGIINNMRK 261 (261)
T ss_pred EECCCEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8648521121739999999999999999998999999999999986179
No 18
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.91 E-value=3.6e-24 Score=144.21 Aligned_cols=47 Identities=30% Similarity=0.414 Sum_probs=44.4
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 50233330561099999999999999999999999999999999996
Q gi|254780380|r 85 NASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131 (134)
Q Consensus 85 d~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i 131 (134)
-.+||+|.||||+++||++||++||+||+|.|+|+++|+|+++++.|
T Consensus 214 v~qG~LE~SNVd~~~Emv~mI~~qRaye~~~k~i~t~De~l~~~~ql 260 (260)
T PRK12694 214 LKQGYVEASNVNVVEELVNMIQTQRAYEINSKAVTTSDQMLQRLTQM 260 (260)
T ss_pred EECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 84486752146399999999999999999988999999999998668
No 19
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.91 E-value=5.9e-24 Score=143.11 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=45.3
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHC
Q ss_conf 02333305610999999999999999999999999999999999-9646
Q gi|254780380|r 86 ASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL-DLLR 133 (134)
Q Consensus 86 ~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l-~i~r 133 (134)
.+||+|.||||+++||++||++||+||+|.|+|+++|+|+++++ +|+|
T Consensus 206 ~qG~LE~SNVn~~~EM~~mI~~qRafe~~~k~i~t~De~~~~a~n~lg~ 254 (255)
T PRK12818 206 RQNSLEKSNVNVTNEMVNMMTTMRSFETNQKIVQSIDETLGKAVNEVGS 254 (255)
T ss_pred EECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7264100126899999999999999999999999999999999997436
No 20
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.91 E-value=5e-24 Score=143.50 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=46.6
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5023333056109999999999999999999999999999999999646
Q gi|254780380|r 85 NASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 85 d~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
-.+||+|.||||+++||++||++||+||+|.|+|+++|+|+++...++|
T Consensus 214 v~qG~LE~SNVd~~~EMv~mI~~qRafe~n~k~i~~~Dem~~~~~~liR 262 (262)
T PRK12692 214 IQQGYLESSNVDPVKEITELISAQRAFEMNSKVIQAADEMAGTVSKGIR 262 (262)
T ss_pred EECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8317610355659999999999999999999999999999999997639
No 21
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.91 E-value=6.7e-24 Score=142.83 Aligned_cols=48 Identities=27% Similarity=0.363 Sum_probs=46.5
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 023333056109999999999999999999999999999999999646
Q gi|254780380|r 86 ASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 86 ~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
.+||+|.||||++.||++||++||+||+|.|+|+++|+|++++-+|+|
T Consensus 197 ~qG~LE~SNV~~~~Em~~mI~~qRaye~n~k~i~~~Dem~~~an~l~R 244 (246)
T PRK12640 197 VSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADDNAQAANQLLR 244 (246)
T ss_pred EECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 645153235679999999999999999999999989999999998742
No 22
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.90 E-value=1.5e-23 Score=141.10 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=46.8
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5023333056109999999999999999999999999999999999646
Q gi|254780380|r 85 NASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 85 d~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
-.+||+|.||||++.||++||++||+||+|.|+|+++|+|++++-.|+|
T Consensus 201 v~qG~LE~SNVd~~~EM~~lI~~qRaye~n~K~i~~~Dem~~~an~L~~ 249 (252)
T PRK12641 201 LQSGMLEDSNVNLEKNMIEMISNARQFEMQMKIISMCDQNTEYANQLLN 249 (252)
T ss_pred EEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8626400244669999999999999999999999999999999998755
No 23
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.90 E-value=1.3e-23 Score=141.35 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=45.4
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC
Q ss_conf 5023333056109999999999999999999999999999999999-646
Q gi|254780380|r 85 NASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLD-LLR 133 (134)
Q Consensus 85 d~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~-i~r 133 (134)
-.+||+|.||||+++||++||.+||+||+|.|+|+++|+|++++++ |+|
T Consensus 201 v~qG~LE~SNVd~~~EM~~mI~~qRafe~n~k~i~~~Dem~~~ai~~lg~ 250 (253)
T PRK12689 201 VEQGYIEKSNVNAVLEMTRMMEVTRTYTQVSSMLQQQSDLRKTAIEKLAD 250 (253)
T ss_pred EECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 60273220236499999999999999999999999999999999999707
No 24
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.90 E-value=1.7e-23 Score=140.76 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=44.9
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC
Q ss_conf 5023333056109999999999999999999999999999999999-646
Q gi|254780380|r 85 NASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLD-LLR 133 (134)
Q Consensus 85 d~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~-i~r 133 (134)
-.+||+|.||||+++||++||++||+||+|.|+|+++|+|++++.+ |+|
T Consensus 208 i~qG~LE~SNV~~~~Em~~mI~~qRafe~~~K~i~t~Dem~~ka~n~l~R 257 (257)
T PRK12819 208 VKNGMLENSNVDMTKEMADLMTNQRMIQASQRVMTSFDKIYEKEANEILR 257 (257)
T ss_pred EECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 85065100036699999999999999999989989999999999897577
No 25
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.89 E-value=3.9e-23 Score=138.92 Aligned_cols=49 Identities=29% Similarity=0.350 Sum_probs=45.3
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC
Q ss_conf 5023333056109999999999999999999999999999999999-646
Q gi|254780380|r 85 NASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLD-LLR 133 (134)
Q Consensus 85 d~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~-i~r 133 (134)
-.+||+|.||||+++||++||++||+||+|.|+|+++|+|++++++ |||
T Consensus 188 v~qG~LE~SNVn~~~EMv~mI~~qR~fe~~~k~i~~~De~~~~ain~lGr 237 (237)
T PRK12690 188 LLQGFLEGSNVNPILEIARMIEVQRAYELGQSFLDAEDDRIRQTIRTLGR 237 (237)
T ss_pred EEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87352101226899999999999999999989999999999999998569
No 26
>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.89 E-value=4.6e-23 Score=138.52 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=44.6
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 502333305610999999999999999999999999999999999964
Q gi|254780380|r 85 NASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132 (134)
Q Consensus 85 d~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~ 132 (134)
-.+||+|.||||+++||++||.+||+||+|.|+|+++|+|++++++-+
T Consensus 190 v~qG~LE~SNVd~~~EM~~lI~~qRafe~~~k~i~~~D~~l~~ai~~l 237 (241)
T PRK12642 190 VVQGYLEGSNVNAMTEMTRLISVSRAFESVSSLMRDSESSVSEAIKTL 237 (241)
T ss_pred EECCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 775741033062999999999999999999999999999999999987
No 27
>PRK05682 flgE flagellar hook protein FlgE; Validated
Probab=99.84 E-value=3.6e-21 Score=128.74 Aligned_cols=47 Identities=34% Similarity=0.472 Sum_probs=44.5
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02333305610999999999999999999999999999999999964
Q gi|254780380|r 86 ASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132 (134)
Q Consensus 86 ~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~ 132 (134)
..|++|.||||+.+||++||.+||+||||.|+|.+.|+|++.+++|+
T Consensus 368 ~~g~LE~SNVDla~E~t~mI~~QRaYqANskvItTsDemLq~linlK 414 (414)
T PRK05682 368 QSGALESSNVDLTTELVDMIVAQRNYQANAKTIKTQDQLLQTLVNLR 414 (414)
T ss_pred EECCEEHHCCCHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHCC
T ss_conf 53640500177999999999998774674034561999999997259
No 28
>PRK06803 flgE flagellar hook protein FlgE; Validated
Probab=99.81 E-value=1.4e-20 Score=125.65 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=43.7
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0233330561099999999999999999999999999999999996
Q gi|254780380|r 86 ASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131 (134)
Q Consensus 86 ~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i 131 (134)
..|.+|.||||+++|+++||.+||+|+||.|+|.+.|+|++.+++|
T Consensus 352 ~~gaLE~SNVDla~Eft~mI~tQR~yqANskvItT~DemlqelvN~ 397 (398)
T PRK06803 352 TSGALEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQQALFNA 397 (398)
T ss_pred EECCEEHHHCHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHH
T ss_conf 3274631314099999999999876356424887489999999740
No 29
>TIGR03506 FlgEFG_subfam fagellar hook-basal body proteins. This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog HMMs, TIGR02489, TIGR02490 and TIGR00488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.
Probab=99.72 E-value=4.2e-18 Score=112.90 Aligned_cols=40 Identities=40% Similarity=0.588 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 88521568999999989888753125555667543320110001234
Q gi|254780380|r 7 SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEE 53 (134)
Q Consensus 7 ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~ 53 (134)
+|-++.|||.+++.||++||+||||++|+| ||+..+.|+.
T Consensus 2 sly~a~sgm~a~~~~l~visnNlAN~nT~G-------fK~~~~~F~~ 41 (231)
T TIGR03506 2 ALYTALSGLNAQSKALDVIANNIANANTTG-------FKASRAEFSD 41 (231)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-------HCCCCCCHHH
T ss_conf 489999999999986788888888777644-------3547241788
No 30
>TIGR02490 flgF flagellar basal-body rod protein FlgF; InterPro: IPR012836 Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. This entry contains proteins only from the proteobacteria, and not in the epsilon subdivision (where the architecture of the related FlgE protein differs substantially from other lineages).; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=99.70 E-value=4.6e-17 Score=107.55 Aligned_cols=57 Identities=32% Similarity=0.468 Sum_probs=51.5
Q ss_pred CCCCCCC-CCH-----HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 1432111-250-----23333056109999999999999999999999999999999999646
Q gi|254780380|r 77 FDPGHPV-ANA-----SGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 77 y~P~~p~-Ad~-----~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
-+|+.|+ ||+ .|++|.|||+.++|||+||+.+|.||..+|+|++++++.++.-.|+|
T Consensus 191 ~~pG~~~~aD~~v~v~~g~LEgSNVnav~emv~mI~l~RqFE~Q~Kmm~tA~~na~aan~Ll~ 253 (254)
T TIGR02490 191 TDPGGPAAADESVRVVSGALEGSNVNAVEEMVSMISLSRQFEMQVKMMKTAEDNAQAANRLLR 253 (254)
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 788986566886345068554777528899999998753467788999878788999988405
No 31
>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=99.64 E-value=2.4e-15 Score=98.63 Aligned_cols=120 Identities=23% Similarity=0.366 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-------CC-----CEECC
Q ss_conf 9047888852156899999998988875312555566754332011000123432210475-------42-----10002
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGV-------RV-----KKIGV 68 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv-------~~-----~~i~~ 68 (134)
|+.|-+.|++-..+|++...|..++|+||||++|++ |+++.+.|+..+...... .. ..+..
T Consensus 2 ~~~~~~~~~~l~~aLd~~~~Rq~via~NIANadTPg-------YKa~dv~Fe~~L~~a~~~~~~~~~~~l~~T~~~Hi~~ 74 (137)
T PRK05680 2 LDSFDKALGFQQEALNLRAQRQEVIANNIANADTPG-------YKARDIDFESVLAKAMSGRQSGGGLALARTSERHIPA 74 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 448999999999999999999999986020268999-------8866277999999998425666776545578332477
Q ss_pred ---CCCCCCCCCC-CCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf ---6543100014-3211125023333056109999999999999999999999999999999999646
Q gi|254780380|r 69 ---DQSTFVEEFD-PGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 69 ---~~~~~~~~y~-P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
........|. |..|..|.+ |||+-.||+.|.+.+..|++.+..++..=.++.+++.=||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~DGN------~Vdle~Em~~~a~N~l~Y~a~~~~l~~~~~~l~~aI~gGr 137 (137)
T PRK05680 75 QATTSSKAELLYRDPHQPSNDGN------TVDMDVERTEFAKNSLMYQALLTALNGKFKGLMSVLQGGK 137 (137)
T ss_pred CCCCCCCCCEEECCCCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 77888876324427986478998------6087999999999999999999999999999999986579
No 32
>PRK08425 flgE flagellar hook protein FlgE; Validated
Probab=99.63 E-value=1.3e-16 Score=105.17 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=47.0
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5023333056109999999999999999999999999999999999646
Q gi|254780380|r 85 NASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 85 d~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
-..|.+|.|||||.+|+++||.+||+||||.|+|.|+|+|++.+|+|+|
T Consensus 668 I~~~sLE~SNVDLs~Eft~mI~tQRgyQANsKvITTsDemLqelinLKR 716 (716)
T PRK08425 668 ISASKLEMSNVDLSRSLTQLIVVQRGFQANSKTITTSDQMLNTLLQLKQ 716 (716)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEHHHHHHHHHHHCC
T ss_conf 7547623312159999999999766420304378618999999986469
No 33
>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=99.60 E-value=1.1e-14 Score=95.31 Aligned_cols=117 Identities=27% Similarity=0.312 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-HHHHHHHCCC----CCCCEECCCCC--CC
Q ss_conf 90478888521568999999989888753125555667543320110001-2343221047----54210002654--31
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTIS-FEEVMHGSGG----VRVKKIGVDQS--TF 73 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~-~~~~~~~~~g----v~~~~i~~~~~--~~ 73 (134)
|+. +..|+++.+-|.....|..++|+||||++|++ |+++.+. |+..+.+... .....+..... .+
T Consensus 1 m~~-l~lf~la~~~~~~~~~Rq~viA~NIANadTPg-------YkarDv~~Fe~~l~~~~~~l~~T~~~Hi~~~~~~~~~ 72 (126)
T PRK06003 1 MSP-IYLFDLASRQAQWLSVRQATVAGNIANANTPG-------YRARDVEPFADVLDKTGLTMAATSPGHLGAEATGIDV 72 (126)
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCC
T ss_conf 971-15999999998999999999997220279999-------8612253799998614664010787650776677874
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00014321112502333305610999999999999999999999999999999999
Q gi|254780380|r 74 VEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 74 ~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
........+....+ +-+||+-+||+.+-++++.|++++.+++..-.|+..++
T Consensus 73 ~~~~~~~~~~~~~d----GN~V~le~Em~~~aen~~~Y~~~~~l~~~~~~ml~~Ai 124 (126)
T PRK06003 73 TEARPDDSWEVTHS----GNSVSLEQEMMKAGEINRDYSLNTAIVKSFHRMMLMTV 124 (126)
T ss_pred CCCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22332677763799----99457999999999999999999999999999999986
No 34
>PRK12621 flgB flagellar basal body rod protein FlgB; Provisional
Probab=99.59 E-value=1.7e-14 Score=94.28 Aligned_cols=122 Identities=24% Similarity=0.347 Sum_probs=87.6
Q ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE--ECCCCCCCCCCC
Q ss_conf 90478-888521568999999989888753125555667543320110001234322104754210--002654310001
Q gi|254780380|r 1 MDYLI-ASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVKK--IGVDQSTFVEEF 77 (134)
Q Consensus 1 m~~l~-~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv~~~~--i~~~~~~~~~~y 77 (134)
|+.|| +.|++-..+|++...|..++|+||||++|++ |+++.+.|+..+....+..... ...+..-.+...
T Consensus 1 m~~~f~~~i~ll~~aLd~~~~Rq~via~NIANadTPg-------YKardv~Fe~~L~~a~~~~~~~~l~~T~~~Hi~~~~ 73 (136)
T PRK12621 1 MKSLYEPHVNLVGKVMDMQLQRQNVVMSNIANVRTPG-------YKPRELEFEKQLQSALGLDAKGRMTRTEENHLPAVF 73 (136)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 9324787999999999999999999997132058999-------874418789999998761447864557713157888
Q ss_pred CCC----------CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 432----------11125023333056109999999999999999999999999999999999646
Q gi|254780380|r 78 DPG----------HPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 78 ~P~----------~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
+|. .|....+| =|||+-.||+.|.+.+-.|++-+..++..=.++..++.=||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~dg----N~Vdid~Em~~la~N~l~Y~a~~~~l~~~~~~l~~aI~~Gr 135 (136)
T PRK12621 74 DPEGFGPEWSKAFKPRVVHGE----DRVNLDKEMAKMAKNSLQYNALTTVIKGNFEGVKNIIMEGQ 135 (136)
T ss_pred CCCCCCCCEEECCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 977677540104787646899----87654899999999999999999999999999999998348
No 35
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=99.58 E-value=6.3e-16 Score=101.66 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=46.1
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5023333056109999999999999999999999999999999999646
Q gi|254780380|r 85 NASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 85 d~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
-..|.+|.|||||++||++||.+||+|+||.|+|.|+|+|++.+|+|+|
T Consensus 557 I~~~aLE~SNVDLa~Eft~mIvtQR~yQANsKvITTsD~mLqelinLKR 605 (605)
T PRK05841 557 IRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 (605)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHCHHHCEEEEEHHHHHHHHHHHCC
T ss_conf 6247620133058999999999876520541278768999999986259
No 36
>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional
Probab=99.56 E-value=5.6e-14 Score=91.63 Aligned_cols=119 Identities=22% Similarity=0.245 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCCC-----CCEECCC--CCC
Q ss_conf 9047888852156899999998988875312555566754332011000-1234322104754-----2100026--543
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTI-SFEEVMHGSGGVR-----VKKIGVD--QST 72 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v-~~~~~~~~~~gv~-----~~~i~~~--~~~ 72 (134)
|+. ++.|+.+..=|.-...|..++|+||||++|++ |+++.+ .|+..+....... ...+... ...
T Consensus 2 ~~~-l~lf~l~~~~~~~la~Rq~ViA~NIANADTPg-------YkarDl~~F~~~l~~~~~~~~~~t~~~H~~~~~~~~~ 73 (128)
T PRK12627 2 FEK-LEIFRMASAMARHAGERQAVIAQNVANADTPG-------YRARDLADFAETYASMTAGGLRATRPGHLNGAAAGAA 73 (128)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 861-28999999999999999999997410379999-------8500004199999844122334477100156767778
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 10001432111250233330561099999999999999999999999999999999996469
Q gi|254780380|r 73 FVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD 134 (134)
Q Consensus 73 ~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r~ 134 (134)
....++...+.. .+ +-+||+-+||+.+.+.+..|++++.+++..-.|+.++| ||+
T Consensus 74 ~~~~~~~~~~~~-~d----GN~V~le~Em~~~aen~~~Y~~~~~~~~~~~~~lrtAi--Gk~ 128 (128)
T PRK12627 74 DPVVTDAGGPAS-PN----GNSVSLEEEMLRSAEAKRQHDRALAIYKSSMSLLRTSL--GRS 128 (128)
T ss_pred CCCCCCCCCCCC-CC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCC
T ss_conf 764015899859-99----88355999999999999999999999999999999986--779
No 37
>PRK12637 flgE flagellar hook protein FlgE; Provisional
Probab=99.53 E-value=2.4e-15 Score=98.66 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=43.8
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2333305610999999999999999999999999999999999964
Q gi|254780380|r 87 SGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132 (134)
Q Consensus 87 ~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~ 132 (134)
.|.+|.||||+++|+++||.+||+|+||.|+|.|+|+|++.+++|+
T Consensus 428 ~gaLE~SNVDLa~Eft~mIvtQR~yQANSKvItTsDemLqelinLK 473 (473)
T PRK12637 428 GQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMNMR 473 (473)
T ss_pred ECCEEHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHCC
T ss_conf 1754024407999999999987650143258875899999997059
No 38
>PRK12620 flgB flagellar basal body rod protein FlgB; Provisional
Probab=99.52 E-value=1.6e-13 Score=89.27 Aligned_cols=114 Identities=22% Similarity=0.345 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC---------CEECCCC---
Q ss_conf 4788885215689999999898887531255556675433201100012343221047542---------1000265---
Q gi|254780380|r 3 YLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRV---------KKIGVDQ--- 70 (134)
Q Consensus 3 ~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv~~---------~~i~~~~--- 70 (134)
.|-++|++...+|.....|..++|+||||++|++ |+++.+.|+..+....+... ..+....
T Consensus 4 ~fd~~~~~~~~aL~lr~~Rq~viasNIANadTPg-------YKardv~Fe~~L~~a~~~~~~~~l~~T~~~H~~~~~~~~ 76 (132)
T PRK12620 4 PFTSFLGVHGDALTLREQRMKLIASNLSNVDTPG-------YKAKDLNFEAALKSAQGEQDGGLMQTTDAKHYEVGGGGL 76 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4887862889999999999999986022168999-------876658789999998664667755446733016777888
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43100014321112502333305610999999999999999999999999999999999
Q gi|254780380|r 71 STFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 71 ~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
.+......|..|.-|. -+||+-.||+.+.+.+-.|++.+..++.-=.++.++|
T Consensus 77 ~~~~~~~~~~~~~~DG------NtVd~d~Em~~~aeN~l~Y~a~~~~l~~ki~~l~~AI 129 (132)
T PRK12620 77 NPFQITREADQPSLDG------NTVDPDAERAAYGRAALEYRASLSFLESKVRSMLTAI 129 (132)
T ss_pred CCCEEECCCCCCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9741235788867899------8506699999999999999999999999999999986
No 39
>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion]
Probab=99.52 E-value=1.1e-13 Score=90.13 Aligned_cols=116 Identities=24% Similarity=0.367 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-----CCC-----CEEC-CC
Q ss_conf 904788885215689999999898887531255556675433201100012343221047-----542-----1000-26
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGG-----VRV-----KKIG-VD 69 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~g-----v~~-----~~i~-~~ 69 (134)
|+.++.+++....+|+.-..|-.++|.||||++|++ |+++.+.|+..+..... +.. ..+. ..
T Consensus 1 ~~~~~~~~~l~~~al~~~~~Rq~via~NIANadTP~-------yKa~dv~Fe~~L~~~~~~~~~~l~l~~T~~~Hl~~~~ 73 (133)
T COG1815 1 MMSFDRAFGLLQKALDVRSLRQEVIANNIANADTPG-------YKAKDVDFESVLKKALAGNNTTLALAKTSTRHLGPAE 73 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-------CCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC
T ss_conf 964789999999998899999999985310279999-------8744475899999987247770222008886538522
Q ss_pred CCC---CC-CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 543---10-00143211125023333056109999999999999999999999999999999999
Q gi|254780380|r 70 QST---FV-EEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLD 130 (134)
Q Consensus 70 ~~~---~~-~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~ 130 (134)
... .. .-..|.-| .| +=|||+..||+.+...++.|++++.+++..-.|+..+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~-~d------GNtVdld~E~~~~~kN~~~Yq~~~~~l~~~~~~~~~vl~ 131 (133)
T COG1815 74 NIDPTDASLLDRIGDQP-ND------GNTVDLDREMTEFAKNQLMYQALLSFLKSQIKMLNSVLK 131 (133)
T ss_pred CCCCCCCCCCCCCCCCC-CC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 48855444000356556-88------870438999999999999999999999999999999971
No 40
>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion]
Probab=99.50 E-value=5e-15 Score=97.01 Aligned_cols=49 Identities=31% Similarity=0.428 Sum_probs=46.4
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5023333056109999999999999999999999999999999999646
Q gi|254780380|r 85 NASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 85 d~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
-..|.+|.||||+.+|+++||.+||.|+||.|+|+|.|+|++.+++|.|
T Consensus 375 i~~gaLE~SNVDls~EltnmIvaQR~YqANsK~i~T~D~mlq~lvnLkr 423 (423)
T COG1749 375 ISSGALEMSNVDLAKELTNLIVAQRGYQANAKVITTSDQMLQTLVNLKR 423 (423)
T ss_pred ECCCCCEECCCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCC
T ss_conf 5016332112118999999888665044455068605899999986229
No 41
>PRK12625 flgB flagellar basal body rod protein FlgB; Provisional
Probab=99.49 E-value=3.4e-13 Score=87.58 Aligned_cols=115 Identities=19% Similarity=0.294 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----CCCC-----EECC--CCC
Q ss_conf 4788885215689999999898887531255556675433201100012343221047----5421-----0002--654
Q gi|254780380|r 3 YLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGG----VRVK-----KIGV--DQS 71 (134)
Q Consensus 3 ~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~g----v~~~-----~i~~--~~~ 71 (134)
.|-++|++...+|.....|..++|+||||++|++ |+++.+.|+..+....+ .... .+.. ...
T Consensus 4 ~fd~~~~~~~~aL~~~~~Rq~via~NIANadTPg-------YKa~dl~Fe~~L~~a~~~~~~~~l~~T~~~H~~~~~~~~ 76 (132)
T PRK12625 4 NFDKALGVHQYTLGIRAQRAEVISSNIANADTPH-------YKARDVDFSAAMQAARSQQQGLEMTGSDEKHFDLAALTG 76 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4888861789999999999999987143068999-------886538899999998754788866547745467767787
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3100014321112502333305610999999999999999999999999999999999
Q gi|254780380|r 72 TFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 72 ~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
.....-.|..|.. .+ +-|||+-.||+.|.+.+-.|++.+..++.-=.++..+|
T Consensus 77 ~~~~~~~~~~~~~-~D----GN~Vdid~Em~~~aeN~l~Y~a~~~~l~~k~~~l~~aI 129 (132)
T PRK12625 77 QHVKFRVPNQPDT-GD----GNTVDIQQEQSAFMQNALEYQMSLGFLDSKFSGMKKAL 129 (132)
T ss_pred CCCEEECCCCCCC-CC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6540235787747-89----98114799999999999999999999999999999987
No 42
>PRK12685 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=99.49 E-value=3.6e-13 Score=87.45 Aligned_cols=110 Identities=20% Similarity=0.242 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 47888852156899999998988875312555566754332011000123432210475421000265431000143211
Q gi|254780380|r 3 YLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVKKIGVDQSTFVEEFDPGHP 82 (134)
Q Consensus 3 ~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv~~~~i~~~~~~~~~~y~P~~p 82 (134)
.|-++|.|-..+|+....|..++|+||||++|++ |+++.+.|+..+....+.... ..........|..|
T Consensus 4 ~~d~~~~~~~~aLd~~~~Rq~via~NIANadTPg-------YKakdl~F~~~l~~~~~~~~~----~~~~~~~~~~~~~~ 72 (116)
T PRK12685 4 NLDAALGVHPQTLDFRVERSKVLASNLANAETPG-------YKARDLDFKAVMSQINAGMQP----KQQYELSYRVPYQN 72 (116)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCC----CCCCCCCCCCCCCC
T ss_conf 3898865789999999999999986033168999-------876658899999998568998----87877541689886
Q ss_pred CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12502333305610999999999999999999999999999999999
Q gi|254780380|r 83 VANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 83 ~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
..|. -+||+-.||+.+.+.+-.|++.+..++..=.++.++|
T Consensus 73 ~~DG------N~Vdld~Em~~~aeN~l~Y~a~~~~l~~~~~~lk~AI 113 (116)
T PRK12685 73 SADG------NTVELGKEQARYSQNAMDYQTSLTFLNMKISGLKSAI 113 (116)
T ss_pred CCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999------8537899999999999999999999999999999986
No 43
>PRK12619 flgB flagellar basal body rod protein FlgB; Provisional
Probab=99.47 E-value=7.1e-13 Score=85.90 Aligned_cols=114 Identities=20% Similarity=0.287 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--------CEECCC-CCCC
Q ss_conf 4788885215689999999898887531255556675433201100012343221047542--------100026-5431
Q gi|254780380|r 3 YLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRV--------KKIGVD-QSTF 73 (134)
Q Consensus 3 ~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv~~--------~~i~~~-~~~~ 73 (134)
.|-++|.|...+|.+-..|..++|+||||++|++ |+++.+.|+..+....+... ..+... ....
T Consensus 4 ~~d~~~gi~~~aL~~r~~Rq~via~NIANadTPg-------YKakdv~Fe~~L~~a~~~~~~~l~~t~~~Hi~~~~~~~~ 76 (130)
T PRK12619 4 NLDSYFGIHAKALIARDQRASVLANNIANVNTPN-------FKARDVDFNEVLTATMAGNSQQLRVTSDQHINTNADFMT 76 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3887866779999999999999986232168999-------864448899999998736876654478020478777666
Q ss_pred CCCCC-CCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00014-321112502333305610999999999999999999999999999999999
Q gi|254780380|r 74 VEEFD-PGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 74 ~~~y~-P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
...|. |.+|..|. -|||+-.||+.+.+.+-.|+|.+..++.-=.++.++|
T Consensus 77 ~~~~r~~~~~~~DG------NtVDid~Ema~~a~N~l~Yqa~~~~l~~k~~~l~~aI 127 (130)
T PRK12619 77 HLKYRMTHHASLDG------NTVDKDMETTEFARNALNYQASLSFLNGKIKSMLTAL 127 (130)
T ss_pred CCEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 51012688768999------7425799999999999999999999999999999986
No 44
>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional
Probab=99.43 E-value=1.1e-12 Score=84.89 Aligned_cols=113 Identities=22% Similarity=0.315 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CC-----CEECC--CCCCCCCCC
Q ss_conf 88852156899999998988875312555566754332011000123432210475-42-----10002--654310001
Q gi|254780380|r 6 ASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGV-RV-----KKIGV--DQSTFVEEF 77 (134)
Q Consensus 6 ~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv-~~-----~~i~~--~~~~~~~~y 77 (134)
-.|++-.++|++...|..++|+||||++|++ |+++.+.|+..+....+. .. ..+.. +.......+
T Consensus 11 ~tf~ll~~aLd~~~~Rq~vIa~NIANadTPg-------YKa~dv~Fe~~L~~a~~~~~l~~T~~~Hi~~~~~~~~~~~~~ 83 (131)
T PRK12623 11 LTYDLLKKGLDASSYRGKVISNNIANVNTKD-------YKRHYVTFEETLKDNLDNLELKTTNEKHINDGVEFGQIKEKR 83 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 5899999999999999999986032168999-------876558699999874425876557712037877878731685
Q ss_pred CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43211125023333056109999999999999999999999999999999999
Q gi|254780380|r 78 DPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLD 130 (134)
Q Consensus 78 ~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~ 130 (134)
+++.+. ..+ +=|||+-.||+.|.+.+-.|++-+..++..=.++.++++
T Consensus 84 ~~~~~~-r~D----GNnVDid~Em~~laeN~l~Y~a~~~~l~~k~~~lk~aI~ 131 (131)
T PRK12623 84 DESTSM-RTD----GNNVDIDNEMVNQAANTLMYNALITQLNNRLATTRYIIN 131 (131)
T ss_pred CCCCCC-CCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 689986-899----986779999999999999999999999989999998629
No 45
>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional
Probab=99.43 E-value=2e-12 Score=83.58 Aligned_cols=117 Identities=20% Similarity=0.271 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCC------CCCC-----CEECC-
Q ss_conf 90478888521568999999989888753125555667543320110001234322104------7542-----10002-
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSG------GVRV-----KKIGV- 68 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~------gv~~-----~~i~~- 68 (134)
|+-|-.+|++-..+|++...|.++||+||||++|++ |+++.+.|+..+.... +... ..+..
T Consensus 1 ~~lF~~ti~ll~kaLd~~~~Rq~via~NIANadTPg-------YK~~dv~Fe~~L~~Al~~~~~~~l~l~~t~~~Hi~~~ 73 (135)
T PRK12622 1 MNIFERSVDLSHRYLDVLSLRQSVIADNIANVDTPN-------FKRSKVTFESELERAILNEDKNDLSLIRGNDKHLSGF 73 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 952788999999998899999999985010278999-------7524076999999998537777776555886566777
Q ss_pred -----CCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----6543100014321112502333305610999999999999999999999999999999999
Q gi|254780380|r 69 -----DQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 69 -----~~~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
.+..+...+++.. ....+| =|||+-.||+.|.+.+-.|++-+..+...=..+..++
T Consensus 74 ~~~~~~~~~p~~~~~~~~-~~~~DG----NnVDid~Em~~la~N~l~Y~al~~~l~~~f~~l~~vI 134 (135)
T PRK12622 74 KELGYLDVKPHRMLDHLS-TLNNNG----NNVDIDSEMKALVQNQMMYHLFTNIQAHHFKSVNIVI 134 (135)
T ss_pred CCCCCCCCCEEEEECCCC-CCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 777755565046407887-667999----8758899999999999999999999998999999985
No 46
>PRK12626 flgB flagellar basal body rod protein FlgB; Provisional
Probab=99.40 E-value=3.6e-12 Score=82.24 Aligned_cols=117 Identities=21% Similarity=0.349 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-----CCCCC---E-------
Q ss_conf 90478888521568999999989888753125555667543320110001234322104-----75421---0-------
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSG-----GVRVK---K------- 65 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~-----gv~~~---~------- 65 (134)
||-|-.+|.|-..+|..-..|..++|+||||++|++ |+++.+.|+..+.... +.... .
T Consensus 2 ~~~ld~~~~~~~~AL~lR~~RqevlAsNIANadTPg-------YKArDldFe~~L~~al~~~~~~~~~~~~~~l~~~~~~ 74 (162)
T PRK12626 2 LDKLDAEFAFGRQALDVRAYRQELLSSNIANADTPG-------YRARDVDFASTLARALKQTDGGAAAGNAAQLPMAQPA 74 (162)
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC-------CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 347787736109999999999999985001378999-------8643587999999998621355555531001211223
Q ss_pred ---------------EC------CCC----CCCCCCC-CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------------00------265----4310001-432111250233330561099999999999999999999999
Q gi|254780380|r 66 ---------------IG------VDQ----STFVEEF-DPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIK 119 (134)
Q Consensus 66 ---------------i~------~~~----~~~~~~y-~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~ 119 (134)
+. ... ......| .|..|..|.+ +||+-.||+.+.+.+-.|||.+..++
T Consensus 75 ~~~~~~~l~~T~~~Hl~~~~~~~~~~~~~~~~~~~~yR~p~q~s~DGN------tVDld~E~a~faeN~l~YqAsl~fl~ 148 (162)
T PRK12626 75 GVTSGMSMVSTAPGHMAGTVKLIPTGGPSDDYGRAQYRMPLQPALDGN------TVDLDTERVQFADNALHYETGMTVMT 148 (162)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 444554313357421256433465667644445401116888688997------50469999999999999999999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780380|r 120 QSHDMMTTTLD 130 (134)
Q Consensus 120 ~~~~m~~~~l~ 130 (134)
.-=.++.++|.
T Consensus 149 ~ki~~l~~AI~ 159 (162)
T PRK12626 149 QQIKTMIAAIT 159 (162)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999975
No 47
>PRK12624 flgB flagellar basal body rod protein FlgB; Provisional
Probab=99.39 E-value=3.2e-12 Score=82.51 Aligned_cols=115 Identities=19% Similarity=0.341 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC---------C-----CEECC-
Q ss_conf 78888521568999999989888753125555667543320110001234322104754---------2-----10002-
Q gi|254780380|r 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVR---------V-----KKIGV- 68 (134)
Q Consensus 4 l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv~---------~-----~~i~~- 68 (134)
+...+++-..||++...|..+||+||||++|++ |+++.|.|+..+....... . ..+..
T Consensus 7 f~kT~~lL~kaLd~~~~Rq~vIa~NIAN~dTPg-------YK~~dv~Fe~~L~~al~~~~~~~~~~~~~~~t~~rHi~~~ 79 (143)
T PRK12624 7 FMKTQDLLERGMNNSIQKRKVISDNIANADVPH-------FKRSEVIFESMIKRAIESEKIEKEKEVPTQISDERHIQFF 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 026999999999999999999986011268999-------7632062999999998602223444566666872212567
Q ss_pred -----CCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----65431000143211125023333056109999999999999999999999999999999999
Q gi|254780380|r 69 -----DQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLD 130 (134)
Q Consensus 69 -----~~~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~ 130 (134)
....+....++..+. ..+| -|||+-.||+.|.+.+-.|++-+..++..=.++.++|.
T Consensus 80 ~~~~~~~~~~~~~~d~~t~~-r~DG----NnVDid~Em~~la~N~l~Y~al~~~l~~~~~~lr~vIk 141 (143)
T PRK12624 80 KPLDYREVQPKTNLDYLTTM-RADG----NNVDVEKEVVEASNSQMQYMLMIERLNQNYRLLKQVMR 141 (143)
T ss_pred CCCCCCCCCCEEEECCCCCC-CCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 88873446742430467655-8998----72689999999999999999999999978999999973
No 48
>PRK06797 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=99.38 E-value=1.8e-12 Score=83.84 Aligned_cols=104 Identities=20% Similarity=0.295 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-----------------CCCEEC---
Q ss_conf 852156899999998988875312555566754332011000123432210475-----------------421000---
Q gi|254780380|r 8 AHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGV-----------------RVKKIG--- 67 (134)
Q Consensus 8 i~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv-----------------~~~~i~--- 67 (134)
+.--|.-|+....|-+++|+||||++|++ |+++.+.|++.+....+. ....+.
T Consensus 5 ~~~~g~~Ld~r~~Rq~viAsNIANadTPg-------YKarDv~Fe~~L~~a~~~~~~~~~~~~~~~~l~~T~~~Hl~~~~ 77 (135)
T PRK06797 5 VSDVGHYMNYLVTKRNTVSSNIANANTPG-------YKAQDVTFAEQMNKSSALYKSNAADLKSNPDLYQTNEMHLPTVN 77 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCC-------CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCC
T ss_conf 99999998899999999986102478999-------86433879999999887653011123567763547765568877
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 265431000143211125023333056109999999999999999999999999999
Q gi|254780380|r 68 VDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDM 124 (134)
Q Consensus 68 ~~~~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m 124 (134)
.+.......+.|.+|.-|.+ +||+..||+.|.+.+-.|+|.+..|+.-=.|
T Consensus 78 ~~~~~~~~~~~~~~~~~DGN------tVD~d~Em~~~a~N~l~Yqas~~~Ln~k~sl 128 (135)
T PRK06797 78 TKNTYAKIQTKSMQTNKDGN------SVDVTTEMLDLMKANQLYGISINAINTQYAI 128 (135)
T ss_pred CCCCCCEEECCCCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 88877436558998489997------5578999999999999999999998255418
No 49
>PRK07182 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=99.36 E-value=8.3e-12 Score=80.41 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC---CCC-----------CEEC-
Q ss_conf 4788885215689999999898887531255556675433201100012343221047---542-----------1000-
Q gi|254780380|r 3 YLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGG---VRV-----------KKIG- 67 (134)
Q Consensus 3 ~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~g---v~~-----------~~i~- 67 (134)
.|-.+|+|-..+|.....|.+++|+||||++|++ |+++.+.|+..+..... +.. ....
T Consensus 4 ~f~~~lg~~~~aL~lR~~RqevlAsNIANaDTPg-------YKArDidF~~~L~~A~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T PRK07182 4 HFQKALGVHPMAMQLRLTRAELLSANLANVNTPN-------FQAKDIDFAAEMQRAKRGNGVMAAPDRSSAQMLSTQMSS 76 (148)
T ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3886737059999999999999986122168999-------866378889999998704765446665542112444442
Q ss_pred ----C---------CCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----2---------6543100014321112502333305610999999999999999999999999999999999
Q gi|254780380|r 68 ----V---------DQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 68 ----~---------~~~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
. ...+....-.|..|.-|.+ +||+-.||..+.+.+-.|||.+..++--=..+.++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~yR~p~qps~DGN------tVdld~E~a~fa~Nal~Yqasl~fl~~ki~~l~~AI 145 (148)
T PRK07182 77 AQMSSPQMMSSPQIMSSPQIKYRLPYQPSLDGN------TVALNVEQAEFSKNALDYQTSLSFLNMKLTGLKQAI 145 (148)
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 335774335664446676603326887688997------403599999999999999999999999999999987
No 50
>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=99.25 E-value=6.5e-11 Score=75.78 Aligned_cols=106 Identities=18% Similarity=0.328 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH---HHHHHHHHCC-----CCCCC-----EECCC--CCCCCCC
Q ss_conf 56899999998988875312555566754332011000---1234322104-----75421-----00026--5431000
Q gi|254780380|r 12 NSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTI---SFEEVMHGSG-----GVRVK-----KIGVD--QSTFVEE 76 (134)
Q Consensus 12 ~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v---~~~~~~~~~~-----gv~~~-----~i~~~--~~~~~~~ 76 (134)
.+.|+.-..|..++|+||||++|++ |+++.+ .|+..+.... ++... .+... ...+...
T Consensus 3 ~~~m~~~~~Rq~via~NIANadTPg-------YkarDl~~~~F~~~l~~~~~~~~~~~~l~~T~~~Hi~~~~~~~~~~~~ 75 (126)
T PRK06004 3 RTRMQWHQERQKVLAENVANSDTPG-------FRPRDLVEPKFDATGQLAAGSPGGGLAMMRTSASHMAPPGGSPSFDAR 75 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf 8888799999999997244068999-------883236525199999998605788875344786432887788776540
Q ss_pred CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 14321112502333305610999999999999999999999999999999999
Q gi|254780380|r 77 FDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 77 y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
+.++.+. ..+ +=+||+-.||+.+.+.+..|++.+..++..-.|+.++|
T Consensus 76 ~~~~~~~-~~d----GN~Vdle~Em~~~aen~~~Y~~~~~~~~~~~~~l~~AI 123 (126)
T PRK06004 76 RNAGFET-RPA----GNAVNLEDEMLKVSDNQMDYAAATSLYQKSLGLLKTAI 123 (126)
T ss_pred CCCCCCC-CCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1578633-899----98146999999999999999999999999999999997
No 51
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=99.17 E-value=2.3e-10 Score=72.94 Aligned_cols=48 Identities=29% Similarity=0.358 Sum_probs=45.4
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 233330561099999999999999999999999999999999996469
Q gi|254780380|r 87 SGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD 134 (134)
Q Consensus 87 ~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r~ 134 (134)
.|++|.|||+.++||++||+-+|.||.-.|+|++.+++.+.+-.++|.
T Consensus 203 sG~LE~SNVnav~~Mt~mI~~aRqfEmqmKmist~d~na~~anqLl~~ 250 (251)
T COG4787 203 SGALEGSNVNAVEEMTDMISLARQFEMQMKMISTADDNAGAANQLLRI 250 (251)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 141345653379999999998888898898875421006889878505
No 52
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=99.15 E-value=2.1e-11 Score=78.36 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=38.2
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3056109999999999999999999999999999999999
Q gi|254780380|r 91 KYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLD 130 (134)
Q Consensus 91 ~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~ 130 (134)
..|+||+.+||++||..||+|+||.|+|.+.++|++++|+
T Consensus 454 s~SGVnlDEE~~nLi~~Q~aYqAnAkvItt~demldtLlN 493 (500)
T PRK07739 454 SVSAVSLDEEMTNMIQFQHAYNAAARMITAIDEMLDKIIN 493 (500)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7129669999999999999999999999999999999998
No 53
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=99.14 E-value=2.2e-10 Score=73.02 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=40.3
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3056109999999999999999999999999999999999646
Q gi|254780380|r 91 KYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 91 ~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
..|.|++-+||++||.-|++|+|+.++|.++++|++++|.|.|
T Consensus 570 svSGVnlDEE~~nLik~QqaY~AsArvista~em~dtLL~i~~ 612 (612)
T PRK08471 570 SISGVSTDEELTNLIKFQSSYGAAAKIITTVDQMLDTLLGIKQ 612 (612)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5106039999999999999999999999999999999982449
No 54
>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=99.09 E-value=1.4e-10 Score=74.09 Aligned_cols=39 Identities=33% Similarity=0.556 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 561099999999999999999999999999999999996
Q gi|254780380|r 93 PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131 (134)
Q Consensus 93 snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i 131 (134)
||||+++||++|++++|+||||+++++++++|+++++++
T Consensus 1 SnV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~~ 39 (39)
T pfam06429 1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL 39 (39)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988789999999999999899999998899999998763
No 55
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=99.02 E-value=1.6e-10 Score=73.82 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 056109999999999999999999999999999999999646
Q gi|254780380|r 92 YPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 92 ~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
.|.|++.+||++||..||+|+|+.|+|.+.++|++++|++.|
T Consensus 441 vSGVnlDEE~~nLi~~Q~aY~AsArvitt~demldtLln~vR 482 (482)
T PRK07521 441 ATGVDTDDEMALLLDLEQSYAASAKVISTVDEMLDSLLRAVR 482 (482)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 138059999999999999999999999999999999998519
No 56
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=98.98 E-value=5.5e-11 Score=76.15 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=44.0
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23333056109999999999999999999999999999999999646
Q gi|254780380|r 87 SGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 87 ~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
.--+|+|||||-+-+++||.-||.||||-|+|.|.|+|+++||.|++
T Consensus 831 ~SaLEMSNVDLSRsLT~LIvvQRGfQANSKtvtTSDQiL~TLlqLKQ 877 (877)
T TIGR02489 831 TSALEMSNVDLSRSLTQLIVVQRGFQANSKTVTTSDQILNTLLQLKQ 877 (877)
T ss_pred CCCCCCCCHHHHHHHHHEEEEECCEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 45210010046664301277651411456403015789999974059
No 57
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.95 E-value=1.6e-09 Score=68.54 Aligned_cols=48 Identities=31% Similarity=0.437 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9047888852156899999998988875312555566754332011000123432
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~ 55 (134)
|..+|.+|+|+.|||.|.+.+|+|+++||||++|+| |.|++|.|+...
T Consensus 1 M~s~f~~Lnia~SGL~a~Q~~l~vt~~NIANanT~G-------YsRq~v~~~~~~ 48 (500)
T PRK07739 1 MPSTFMGLETARRGLFAQQAALYVTGHNIANANTPG-------YTRQRVNLAATP 48 (500)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCEEEEEECCC
T ss_conf 984053599999999999999999977573279998-------052056764346
No 58
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.94 E-value=1.8e-09 Score=68.28 Aligned_cols=55 Identities=40% Similarity=0.491 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 904788885215689999999898887531255556675433201100012343221047542100
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVKKI 66 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv~~~~i 66 (134)
|+ ||++|+|+.|||.|++..|+++++||||++|+| |.|+++.+..... |+.+..|
T Consensus 1 Ms-l~s~lnia~sgL~a~Q~al~vtg~NIANanT~G-------YsRQ~v~~~~~~~---Gv~v~~I 55 (482)
T PRK07521 1 MS-LSSALNTAQSGLTATSRQTSVVSRNIANALTPG-------YSRRTASLVSGPY---GGQVVGI 55 (482)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCEEEEEEECCC---CEEEEEE
T ss_conf 97-678999999999999999998856353079988-------2413778774489---8578779
No 59
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=98.88 E-value=3.9e-09 Score=66.62 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=41.3
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 33056109999999999999999999999999999999999646
Q gi|254780380|r 90 VKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 90 v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
-..|.|+|-|||++||.-|++|+|+.++|.++++|++++|+|.|
T Consensus 606 ~SvSGVNLDEE~aNLi~fQqaY~AsArvIsta~emfDtLLn~vR 649 (649)
T PRK12715 606 DSKSGVNLDEEGANLLVFQQAYQAAGKLMEISNQIMNLLFDIMR 649 (649)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 60315168899999999999999999999999999999998539
No 60
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.87 E-value=1e-09 Score=69.58 Aligned_cols=42 Identities=14% Similarity=0.340 Sum_probs=38.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 305610999999999999999999999999999999999964
Q gi|254780380|r 91 KYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132 (134)
Q Consensus 91 ~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~ 132 (134)
..+.||+-+||++||.-||+|+||.|+|.+.++|++++|+|.
T Consensus 390 svsGVnlDEE~~nLl~~QqaY~A~AkvIst~demldtLLniv 431 (431)
T PRK06799 390 SLEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSII 431 (431)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 253838889999999999999999999999999999998439
No 61
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.84 E-value=1.6e-08 Score=63.37 Aligned_cols=40 Identities=28% Similarity=0.304 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0561099999999999999999999999999999999996
Q gi|254780380|r 92 YPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131 (134)
Q Consensus 92 ~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i 131 (134)
.|.|++-|||++||.-|++|+|+.++|.++++|++++|+.
T Consensus 586 vSGVnlDEE~anLikfQqaY~AsArvIst~dem~dtLln~ 625 (628)
T PRK06665 586 VSGVNKDEELANMIEFQQSYNASAKFINVSNELLDTIINR 625 (628)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6360299999999999999999999999999999999873
No 62
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.84 E-value=1.1e-08 Score=64.18 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=39.2
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 305610999999999999999999999999999999999964
Q gi|254780380|r 91 KYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132 (134)
Q Consensus 91 ~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~ 132 (134)
..|.||+-+||++||.-||+|+||.++|.+.++|++++|+|.
T Consensus 506 svSGVnlDEE~~nLi~~Q~aY~AsArvist~demldtLlni~ 547 (547)
T PRK08147 506 SVSGVNLDEEYGNLQRFQQYYLANAQVLQTASTLFDALLNIR 547 (547)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 431766999999999999999999999999999999987759
No 63
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway . The amino acid sequences of the hook protein and of the three hook-associated proteins of Salmonella typhimurium have been deduced from the DNA sequences of their structural genes (flgE, flgK, flgL and fliD respectively). These sequences have been compared with each other and with those for the filament protein (flagellin) and four rod proteins. The hook protein was found to be most similar to the distal rod protein (FlgG) and the proximal hook-associated protein (HAP1), which are thought to be attached to the proximal and distal ends of the hook, the similarities being most pronounced near the N- and C-termini. It is thought that the axial proteins may adopt amphipathic alpha-helical conformations at their N- and C-termini. These regions of the filament and hook are believed to be responsible for quaternary interactions between subunits. Interaction between N- and C-terminal alpha-helices may be important in the formation of the axial structures of the flagellum. Although consensus sequences have been noted, no consensus extends to the entire set of axial proteins. Thus the basis for recognition of a protein for export by the flagellum-specific pathway remains to be identified.; GO: 0005198 structural molecule activity, 0009296 flagellum biogenesis, 0009424 flagellin-based flagellum hook.
Probab=98.83 E-value=5.2e-09 Score=65.96 Aligned_cols=45 Identities=20% Similarity=0.311 Sum_probs=40.4
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 233330561099999999999999999999999999999999996
Q gi|254780380|r 87 SGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131 (134)
Q Consensus 87 ~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i 131 (134)
+-+-..|.|++-+||++||.-||+|+||.|+|.|.++|++++|.+
T Consensus 451 ~~~~s~sGVs~DEE~~~l~~~Q~~Y~A~ak~i~t~d~m~d~LL~~ 495 (495)
T TIGR02492 451 EARSSISGVSLDEEMANLIQYQKAYQASAKVISTVDEMLDSLLNL 495 (495)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988764166799999999999988999999999999999999639
No 64
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.83 E-value=6.7e-09 Score=65.38 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 904788885215689999999898887531255556675433201100012343
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEV 54 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~ 54 (134)
|..+|++|+|+.|||.|++..|+++++||||++|+| |.|+++.+...
T Consensus 1 M~s~fs~Lnia~sGL~a~Q~aL~vtg~NIANanT~G-------YsRQ~v~~~~~ 47 (612)
T PRK08471 1 MGGIFSSLNTGYTGLQAHQVQVSVTGNNISNASSEF-------YTRQRVVQTAQ 47 (612)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCEEEEECCC
T ss_conf 970565899999999999999999867674078998-------15016774044
No 65
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=98.83 E-value=7.2e-09 Score=65.22 Aligned_cols=45 Identities=29% Similarity=0.320 Sum_probs=41.1
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 333056109999999999999999999999999999999999646
Q gi|254780380|r 89 IVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 89 ~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
+-..|.|++-+||++||.-|++|+|+.++|.++++|++++|.+.|
T Consensus 580 r~SvSGVnlDEE~anLikfQqaY~AaArvIttadem~dtLL~~vR 624 (624)
T PRK12714 580 RDSISGVNLDEEAADMLKLQQAYQAAAQMISTADTMFQAILGAVR 624 (624)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 870306168999999999999999999999999999999998519
No 66
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=98.82 E-value=2.5e-09 Score=67.61 Aligned_cols=46 Identities=28% Similarity=0.416 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 78888521568999999989888753125555667543320110001234322
Q gi|254780380|r 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56 (134)
Q Consensus 4 l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~ 56 (134)
|.++|-.+.|||.+++.+|++|++||||+||+| ||+.++.|+....
T Consensus 1 m~~SlysGVSGL~a~~~~ldvIgNNIANvnT~G-------fK~sr~~F~dl~s 46 (605)
T PRK05841 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLG-------YRSNDPEFKTLFS 46 (605)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC-------CCCCCCCHHHHHH
T ss_conf 917888999999998754423302434167621-------1555353787665
No 67
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.81 E-value=8.9e-09 Score=64.74 Aligned_cols=44 Identities=23% Similarity=0.431 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 788885215689999999898887531255556675433201100012343
Q gi|254780380|r 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEV 54 (134)
Q Consensus 4 l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~ 54 (134)
.|++|+||.|||.|++..|+++++||||++|+| |.|+++.+...
T Consensus 2 ~~S~~n~a~SGl~A~q~al~vts~NIANanT~G-------YsRq~v~~~~~ 45 (431)
T PRK06799 2 RLSDYNTPLSGMLAAQMGLQTTQQNLSNIHTPG-------YVRQMVNYGSV 45 (431)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCEEEEEECC
T ss_conf 642456999999999999998878574079989-------06147220134
No 68
>PRK08425 flgE flagellar hook protein FlgE; Validated
Probab=98.80 E-value=1.9e-09 Score=68.25 Aligned_cols=46 Identities=30% Similarity=0.484 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 78888521568999999989888753125555667543320110001234322
Q gi|254780380|r 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56 (134)
Q Consensus 4 l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~ 56 (134)
|+++|-.+.|||.+++.+|++|++||||+||+| ||+.++.|+....
T Consensus 1 M~rSlytGvSGL~a~~~~mdVigNNIANvNTvG-------fK~sr~~F~dl~s 46 (716)
T PRK08425 1 MLRSLWSGVSGLQAHQIAMDVEGNNIANVNTTG-------FKYSRASFVDMLS 46 (716)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC-------CCCCCCCHHHHHH
T ss_conf 906777788889875300000014122056423-------0555551888775
No 69
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.77 E-value=2.2e-08 Score=62.67 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0561099999999999999999999999999999999996
Q gi|254780380|r 92 YPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131 (134)
Q Consensus 92 ~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i 131 (134)
.|.||+-+||++||.-||+|+||.|+|.+.++|++++|+|
T Consensus 416 vsGVnlDEE~~nLi~~Q~aY~AsArvitt~demldtLln~ 455 (456)
T PRK07191 416 FSGVNNDEEAMNLMEYQRAYQSNMKVIATGDKLFSDLLAL 455 (456)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6581789999999999999999999999999999999953
No 70
>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion]
Probab=98.74 E-value=2.5e-09 Score=67.59 Aligned_cols=45 Identities=33% Similarity=0.558 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7888852156899999998988875312555566754332011000123432
Q gi|254780380|r 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55 (134)
Q Consensus 4 l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~ 55 (134)
|..+|.++-|||+|++.+|+++++||||++|+| ||+.++.|....
T Consensus 1 m~~s~~~gvSGm~a~q~~LdvisnNIANanT~G-------fK~s~~~F~dm~ 45 (423)
T COG1749 1 MLRSFYNGVSGMNAHQFALDVISNNIANANTTG-------FKRSRAEFSDMF 45 (423)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-------CCCCCCCHHHHH
T ss_conf 916776666667776640332023413454521-------132675066320
No 71
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.74 E-value=2e-08 Score=62.90 Aligned_cols=56 Identities=30% Similarity=0.375 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH-------CCCCCCCEECC
Q ss_conf 8885215689999999898887531255556675433201100012343221-------04754210002
Q gi|254780380|r 6 ASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHG-------SGGVRVKKIGV 68 (134)
Q Consensus 6 ~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~-------~~gv~~~~i~~ 68 (134)
+.|+|+.|||.|++..|+++++||||++|+| |.|+++.+...... ..||.+..|..
T Consensus 2 ~~ln~a~SgL~a~q~al~vts~NIANanT~G-------YsRq~v~~~~~~~~~~~~~~~G~GV~v~~I~R 64 (456)
T PRK07191 2 NFIRTAFSGMQAAQAHLNATSMNIANMHTPG-------YSRQGVEQSAIGADGQGGVNAGNGVNVDGIRR 64 (456)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCEEEEEECCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 7578999999999999999988574389989-------15036676423577778875567779837887
No 72
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.73 E-value=1.7e-08 Score=63.35 Aligned_cols=58 Identities=28% Similarity=0.366 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC-------CCCCCCEECC
Q ss_conf 7888852156899999998988875312555566754332011000123432210-------4754210002
Q gi|254780380|r 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS-------GGVRVKKIGV 68 (134)
Q Consensus 4 l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~-------~gv~~~~i~~ 68 (134)
|.++|+|+.|||.|.+..|+++++||||++|+| |-|+++.+.+..... .||.+..|..
T Consensus 1 lss~l~ia~sgL~a~Q~al~vt~~NIaNanT~G-------YsRq~v~~~~~~~~~~~~g~~G~GV~v~~I~R 65 (547)
T PRK08147 1 MSSLINTAMSGLNAAQAALNTVSNNISNYNVAG-------YTRQTTILAQAGSTLTAGGWIGNGVYVSGVQR 65 (547)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCEEEEECCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 961899999999999999999977563389998-------06305775224665567874257879806988
No 73
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=98.72 E-value=5.3e-09 Score=65.92 Aligned_cols=43 Identities=26% Similarity=0.405 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88852156899999998988875312555566754332011000123432
Q gi|254780380|r 6 ASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55 (134)
Q Consensus 6 ~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~ 55 (134)
+.|+|+.|||.|++..|+++++||||++|+| |.|+++.+....
T Consensus 2 sll~ig~sgL~a~Q~al~vt~~NIAN~nT~G-------YsRq~v~~~~~~ 44 (624)
T PRK12714 2 SIMSTGTSALIAFQRALSTVSHNVANINTEG-------YSRQRVEFATRT 44 (624)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCEEEEEECCC
T ss_conf 7178999999999999998847565168998-------031277875136
No 74
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.72 E-value=2.4e-08 Score=62.50 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=39.0
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3305610999999999999999999999999999999999964
Q gi|254780380|r 90 VKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132 (134)
Q Consensus 90 v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~ 132 (134)
-..|.|++-+||++||.-|++|+|+.++|.+.++|++++|.|.
T Consensus 607 ~SvSGVnlDEEl~nLikyQqaY~AaArvItt~deMldtLl~i~ 649 (649)
T PRK06945 607 QSVSGVNLDEEAANLLQYQQLYQANAKVIQTASTLFDTLLGIF 649 (649)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7440613999999999999999999999999999999999539
No 75
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.72 E-value=2e-08 Score=62.95 Aligned_cols=43 Identities=28% Similarity=0.388 Sum_probs=39.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3305610999999999999999999999999999999999964
Q gi|254780380|r 90 VKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132 (134)
Q Consensus 90 v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~ 132 (134)
-..|.|++-+||++||.-|++|+|+.++|.++++|++++|+|.
T Consensus 584 ~svSGVnlDEEl~nLikyQqaY~AaArvItt~demldtLlnik 626 (626)
T PRK08871 584 ASISGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILQLR 626 (626)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6011503999999999999999999999999999999987759
No 76
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.70 E-value=8.8e-08 Score=59.61 Aligned_cols=57 Identities=19% Similarity=0.315 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH---H----CCCCCCCEECC
Q ss_conf 8888521568999999989888753125555667543320110001234322---1----04754210002
Q gi|254780380|r 5 IASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH---G----SGGVRVKKIGV 68 (134)
Q Consensus 5 ~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~---~----~~gv~~~~i~~ 68 (134)
++.|+|+.|||.|.+..|+++++||||++|+| |.|++|.+..... + ..||.+..|..
T Consensus 3 s~ll~ig~sgL~a~Q~al~vtg~NIANanT~G-------YsRq~v~~~~~~~~~~~~~~~G~GV~v~~I~R 66 (626)
T PRK08871 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEG-------YSRQSVIQGTNDPRQFGGSTYGMGVHVENVRR 66 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCEEEEECCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 67899999999999999998747665169988-------05105654045762347872036789837998
No 77
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.68 E-value=8.7e-08 Score=59.64 Aligned_cols=43 Identities=30% Similarity=0.343 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88852156899999998988875312555566754332011000123432
Q gi|254780380|r 6 ASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55 (134)
Q Consensus 6 ~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~ 55 (134)
+.|+|+.|||.+++..|+|+++||||++|+| |.|+++.+....
T Consensus 3 sll~ig~sgL~a~Q~~l~vtg~NIaN~nT~G-------YsRq~v~~~~~~ 45 (649)
T PRK06945 3 SLFNIGVSGLNAAQWGLTTTGHNISNAATPG-------YSRQRPVQAEAS 45 (649)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCEEEEEECCC
T ss_conf 0789999999999999998857565178988-------040166630457
No 78
>PRK12637 flgE flagellar hook protein FlgE; Provisional
Probab=98.65 E-value=1.3e-08 Score=63.84 Aligned_cols=43 Identities=33% Similarity=0.489 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 88521568999999989888753125555667543320110001234322
Q gi|254780380|r 7 SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56 (134)
Q Consensus 7 ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~ 56 (134)
+|.++.|||.+|+.||++|++||||++|++ ||+.++.|+....
T Consensus 2 ~~~~GvsGl~a~~~~l~vi~nNiAN~~T~g-------fK~~~~~F~~~~~ 44 (473)
T PRK12637 2 GFGQGLSGLNAASQNLDVIGNNIANSGTVG-------FKSGAASFADVYA 44 (473)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHCCCCC-------CCCCCCCHHHHHC
T ss_conf 377899999998855325514767377600-------0856671667545
No 79
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=98.65 E-value=1.2e-08 Score=64.12 Aligned_cols=56 Identities=34% Similarity=0.506 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH-------CCCCCCCEECC
Q ss_conf 8885215689999999898887531255556675433201100012343221-------04754210002
Q gi|254780380|r 6 ASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHG-------SGGVRVKKIGV 68 (134)
Q Consensus 6 ~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~-------~~gv~~~~i~~ 68 (134)
+.|+|+.|||.|++..|+|+++||||++|+| |.|+++.+++.... ..||.+..|..
T Consensus 2 sllnig~sgL~a~Q~al~vt~~NIAN~nT~G-------YsRq~v~~~~~~~~~~~~~~~G~Gv~v~~i~R 64 (649)
T PRK12715 2 SILNIAYSGLNAFQRALDVTGNNIANFKTRG-------YSRQSIQFTPIASNRYAGSYIGAGVSVSSIYR 64 (649)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 7688999999999999988705255268998-------04146664224676667873106889757998
No 80
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.63 E-value=6.2e-08 Score=60.39 Aligned_cols=46 Identities=28% Similarity=0.471 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 90478888521568999999989888753125555667543320110001234
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEE 53 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~ 53 (134)
|..+|.+|+|+.|||.|.+..|+++++||||++|+| |.|++|.+++
T Consensus 1 M~s~F~~L~ig~sgL~a~Q~aL~ttg~NIANvnT~G-------YsRQ~v~~~a 46 (628)
T PRK06665 1 MDSTFSGIEIGKRSLFAHKQAMQTTGHNISNASKPG-------YSRQRVTMKT 46 (628)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCEEEEEEC
T ss_conf 985242699999999999999998857664179988-------0521766412
No 81
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=98.63 E-value=1.9e-08 Score=63.08 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 05610999999999999999999999999999999999964
Q gi|254780380|r 92 YPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132 (134)
Q Consensus 92 ~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~ 132 (134)
.|.|++-+||++||.-|++|.||+|+|.+.++|+.++|++.
T Consensus 511 ~SGVnlDEE~anLi~~Qq~Y~AsAKvI~tvd~m~dtLln~~ 551 (552)
T COG1256 511 ISGVNLDEEMANLIQFQQAYQASAKVIQTVDEMLDTLLNIV 551 (552)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 13778779999999999999999999999999999998642
No 82
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.61 E-value=7.9e-08 Score=59.86 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=37.8
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33056109999999999999999999999999999999999
Q gi|254780380|r 90 VKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLD 130 (134)
Q Consensus 90 v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~ 130 (134)
-.-|.|++-+||++||.-|++|+|+.++|.++++|++++|+
T Consensus 634 ~SvSGVnlDEE~anLikfQqaY~AaArvItt~deMlDtLln 674 (676)
T PRK05683 634 DSLSGVSLDEEAANLIKFQQYYTASSQIIKAAQETFDTLIN 674 (676)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85625039999999999999999999999999999999973
No 83
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=98.61 E-value=8.9e-08 Score=59.59 Aligned_cols=61 Identities=33% Similarity=0.436 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH---HHC----CCCCCCEECCC
Q ss_conf 9047888852156899999998988875312555566754332011000123432---210----47542100026
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM---HGS----GGVRVKKIGVD 69 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~---~~~----~gv~~~~i~~~ 69 (134)
|+ +|+.|+|+.|||.|+...|+++.+||+|++|++ |-|++|.+.+.. .+. .||.+..|...
T Consensus 1 ms-~~s~lnta~sgl~a~q~~l~vtg~NIsNant~g-------YsRQrv~~~~~~~~~~~~~~~G~Gv~V~sI~R~ 68 (552)
T COG1256 1 MS-LFSLLNTALSGLNAAQAALDVTGHNISNANTPG-------YSRQRVIQTTNIPYLGGGLNVGTGVNVVSIQRL 68 (552)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-------CCEEEHHHHCCCCCCCCCCCCCCCEEEEEEEEH
T ss_conf 95-267799999999999999987561335689998-------630210432356643576666676488863116
No 84
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.57 E-value=2.6e-07 Score=57.22 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88852156899999998988875312555566754332011000123432
Q gi|254780380|r 6 ASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55 (134)
Q Consensus 6 ~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~ 55 (134)
+.|+|+.|||.|++..|+++++||||++|+| |.|+++.++...
T Consensus 2 sll~ig~sgL~a~q~al~vt~~NIaN~nT~G-------YsRq~v~~~~~~ 44 (676)
T PRK05683 2 SLISIGLSGLGASQTALATTGNNIANVDTAG-------YSRQQAVQTTKA 44 (676)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCEEEEEECCC
T ss_conf 6789999999999999998736664179988-------140166631346
No 85
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway . The amino acid sequences of the hook protein and of the three hook-associated proteins of Salmonella typhimurium have been deduced from the DNA sequences of their structural genes (flgE, flgK, flgL and fliD respectively). These sequences have been compared with each other and with those for the filament protein (flagellin) and four rod proteins. The hook protein was found to be most similar to the distal rod protein (FlgG) and the proximal hook-associated protein (HAP1), which are thought to be attached to the proximal and distal ends of the hook, the similarities being most pronounced near the N- and C-termini. It is thought that the axial proteins may adopt amphipathic alpha-helical conformations at their N- and C-termini. These regions of the filament and hook are believed to be responsible for quaternary interactions between subunits. Interaction between N- and C-terminal alpha-helices may be important in the formation of the axial structures of the flagellum. Although consensus sequences have been noted, no consensus extends to the entire set of axial proteins. Thus the basis for recognition of a protein for export by the flagellum-specific pathway remains to be identified.; GO: 0005198 structural molecule activity, 0009296 flagellum biogenesis, 0009424 flagellin-based flagellum hook.
Probab=98.56 E-value=2.9e-08 Score=62.12 Aligned_cols=56 Identities=36% Similarity=0.522 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH-------------CCCCCCCEECC
Q ss_conf 8885215689999999898887531255556675433201100012343221-------------04754210002
Q gi|254780380|r 6 ASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHG-------------SGGVRVKKIGV 68 (134)
Q Consensus 6 ~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~-------------~~gv~~~~i~~ 68 (134)
..|+||.+||.|.++-|.++++||||++|+| |-|+++.+.+.... +.||++..|..
T Consensus 1 ~~l~~a~~gL~a~q~al~~~~~NIANant~G-------Y~Rq~a~~~~~~~~~~~~~~~~~~~~~G~GV~v~~i~R 69 (495)
T TIGR02492 1 SLLNIAKSGLSASQIALSVTSNNIANANTPG-------YSRQRAELTASPAGGQGLNATEGGLQIGTGVKVTSIRR 69 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 9478999999999999998743622467989-------60466775033343211100014665556469865544
No 86
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=98.51 E-value=9.3e-08 Score=59.49 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 788885215689999999898887531255556675433201100012343
Q gi|254780380|r 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEV 54 (134)
Q Consensus 4 l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~ 54 (134)
|-+.|-+|.|||.++..+++++|+||||++|+| ||+....|...
T Consensus 1 Mdr~iYtA~sg~~~~~~~~~viaNNLANvnT~G-------FK~~~~~~~~~ 44 (209)
T PRK12643 1 MDHAIYTAMGAARQSLELQAVTANNLANASTPG-------FRAQLAAMRAV 44 (209)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-------HCCCHHHHHCC
T ss_conf 926899999999999998889988877478764-------43104534231
No 87
>pfam00460 Flg_bb_rod Flagella basal body rod protein.
Probab=98.27 E-value=4.5e-07 Score=55.96 Aligned_cols=30 Identities=43% Similarity=0.473 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 852156899999998988875312555566
Q gi|254780380|r 8 AHIANSGLAVQSARMQIISENIANARTTGD 37 (134)
Q Consensus 8 i~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~ 37 (134)
|.++.|||++|+.|++++|+||||++|+|+
T Consensus 1 l~~a~sal~a~~~~l~vianNiAN~nT~G~ 30 (31)
T pfam00460 1 LYTAVSALNAQQIALDVIANNIANANTTGY 30 (31)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 913887650899999999861024557678
No 88
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=97.73 E-value=3.2e-06 Score=51.57 Aligned_cols=46 Identities=24% Similarity=0.466 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 78888521568999999989888753125555667543320110001234322
Q gi|254780380|r 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56 (134)
Q Consensus 4 l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~ 56 (134)
|+++|+...|||+|+++-|+|=++||||+||+| ||..+..|...+.
T Consensus 1 MlRSLWSGVsgmQAHQvAlDVEgNNIaNVNTtG-------FKYSRA~F~dMlS 46 (877)
T TIGR02489 1 MLRSLWSGVSGMQAHQVALDVEGNNIANVNTTG-------FKYSRADFGDMLS 46 (877)
T ss_pred CCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCC-------EEEEECCHHHHHH
T ss_conf 951011131011020133310446403313455-------0043043112424
No 89
>TIGR01396 FlgB flagellar basal-body rod protein FlgB; InterPro: IPR006300 Many bacterial species swim actively by means of flagella. The flagella organelle is made of three parts: the basal body, the hook and the filament. The basal body consists of four rings (L,P,S, and M) mounted on a central rod . In Salmonella typhimurium and related organisms the rod has been shown to consist of four different, yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB, flgC, and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. These sequences represent FlgB, one of several components of bacterial flagella. FlgB is part of the basal body.; GO: 0019861 flagellum.
Probab=96.42 E-value=0.018 Score=32.14 Aligned_cols=112 Identities=22% Similarity=0.292 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC----CC---------CEECCCC--
Q ss_conf 88852156899999998988875312555566754332011000123432210475----42---------1000265--
Q gi|254780380|r 6 ASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGV----RV---------KKIGVDQ-- 70 (134)
Q Consensus 6 ~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv----~~---------~~i~~~~-- 70 (134)
.++.+...+|+....|..+++.||||++|++ |+++.+.|+..+...... .. ..+....
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (134)
T TIGR01396 3 RALGLLQKALDLRSLRQEVLANNIANADTPG-------YKAKDLSFEAELKKALDKERDSNLTLALTDTRPRHLNAEGSL 75 (134)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1044677776577776666654310035665-------310110278888887641000000000135542101210000
Q ss_pred ----CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----43100014321112502333305610999999999999999999999999999999999
Q gi|254780380|r 71 ----STFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 71 ----~~~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
..+...++..+ .--....+||+-.|+..+...+-.|+.....+...-......+
T Consensus 76 ~~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (134)
T TIGR01396 76 GYLLVEPSLLLDLPT-----QLKNDGNNVDLDSEMAELAKNSLLYQALLSFLNGKFKGLNSVL 133 (134)
T ss_pred CCCCCCCCEEECCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 122233200001221-----0013565100357788877656789999998765544455431
No 90
>PRK12804 flagellin; Provisional
Probab=94.03 E-value=0.16 Score=27.24 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 056109999999999999999999999999999999999646
Q gi|254780380|r 92 YPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 92 ~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
--++|+++|++++...|-.|||-+.++..+.++-+.+|.|+|
T Consensus 266 i~DaD~A~e~~~l~~~qi~~Qaa~a~laqAN~~~q~~L~Ll~ 307 (307)
T PRK12804 266 IRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 307 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 560069999999999999999999999998266899998519
No 91
>PRK12802 flagellin; Provisional
Probab=92.70 E-value=0.38 Score=25.34 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=41.4
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3333056109999999999999999999999999999999999646
Q gi|254780380|r 88 GIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 88 G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
++=..-++|+++|+++|...+-.||+-+.++..+.++-+.+|.|+|
T Consensus 237 ~~s~i~DaD~A~e~~~l~~~qi~~Qaa~a~laqANq~~q~vl~Llq 282 (282)
T PRK12802 237 ARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ 282 (282)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8766660059999999999999999999999999676899998509
No 92
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=92.61 E-value=0.35 Score=25.53 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=39.2
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3056109999999999999999999999999999999999646
Q gi|254780380|r 91 KYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 91 ~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
..-+||+++||+++...+..+|+..+++..+.++.+-.|.++|
T Consensus 318 ~i~D~D~aee~t~l~~~q~~~Qas~~~laqan~~s~~~l~ll~ 360 (360)
T COG1344 318 RIVDVDMAEESTELTKLQILQQASLQALAQANQLSLLVLSLLR 360 (360)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4007769999999999999999999999999860288897359
No 93
>PRK12807 flagellin; Provisional
Probab=91.69 E-value=0.57 Score=24.44 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=39.7
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3056109999999999999999999999999999999999646
Q gi|254780380|r 91 KYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 91 ~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
.--++|+++|+++|...|-.|+|-+.++..+.++-+..|.|+|
T Consensus 245 ~i~DaD~A~e~~~l~~~qil~Qaa~a~lsqAN~~~q~vL~Llq 287 (287)
T PRK12807 245 QIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 287 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7771049999999999999999999999998467899998509
No 94
>PRK08869 flagellin; Reviewed
Probab=91.34 E-value=0.49 Score=24.78 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=39.8
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3056109999999999999999999999999999999999646
Q gi|254780380|r 91 KYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 91 ~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
.--++|.++||++|-..|-..|+-..++..+.+.-+..|.|+|
T Consensus 335 ~I~DaD~A~E~t~l~k~qil~Qa~~amLaqANq~~q~vL~Llq 377 (377)
T PRK08869 335 RIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 377 (377)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC
T ss_conf 3351319999999999999999999999997317679998409
No 95
>PRK12805 flagellin; Provisional
Probab=90.86 E-value=0.65 Score=24.14 Aligned_cols=44 Identities=11% Similarity=0.218 Sum_probs=40.3
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 30561099999999999999999999999999999999996469
Q gi|254780380|r 91 KYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD 134 (134)
Q Consensus 91 ~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r~ 134 (134)
.--++|.++|+++|...+-.+++-+.++..+.++-+..|.|+.+
T Consensus 244 ~i~DaD~A~e~~~l~k~qil~Qaa~amlaQAN~~pq~vL~Ll~~ 287 (287)
T PRK12805 244 SIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLINS 287 (287)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCC
T ss_conf 37722199999999999999999999999983277999987576
No 96
>PRK12803 flagellin; Provisional
Probab=90.64 E-value=0.5 Score=24.72 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56109999999999999999999999999999999999646
Q gi|254780380|r 93 PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 93 snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
-++|.+.||.+|...|-..|+-+.++..+.++-+..|.|+|
T Consensus 295 ~DaD~A~E~~~ltk~qil~Qa~~amLaQAN~~pq~vL~LLq 335 (335)
T PRK12803 295 KDATMTDEVVASTTNSILTQSAMAMIAQANQVPQYVLSLLR 335 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 63059999999999999999999999997617689998409
No 97
>PRK06819 flagellin; Validated
Probab=90.28 E-value=0.58 Score=24.41 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 056109999999999999999999999999999999999646
Q gi|254780380|r 92 YPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 92 ~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
--++|.++||++|-..|-..|+-..++..+.++-+..|.|+|
T Consensus 330 I~DaD~A~E~t~l~k~qil~Qa~~amLaqANq~~q~vL~Llq 371 (371)
T PRK06819 330 IEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLLR 371 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf 773039999999999999999999999997707789998509
No 98
>PRK13589 flagellin; Provisional
Probab=90.10 E-value=0.61 Score=24.30 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6109999999999999999999999999999999999646
Q gi|254780380|r 94 NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 94 nVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
++|.+.||.+|-..|-.=||-..++-.+.++-|..|.|||
T Consensus 534 DaD~A~Ema~~TK~QILqQAgtamLAQANq~pQ~VL~LLq 573 (573)
T PRK13589 534 DVDFAAESANFSKYNILAQSGSYAMSQANAVQQNVLKLLQ 573 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
T ss_conf 3529999999999999999999999987467488997339
No 99
>PRK13588 flagellin B; Provisional
Probab=89.85 E-value=0.69 Score=24.00 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6109999999999999999999999999999999999646
Q gi|254780380|r 94 NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 94 nVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
++|.+.||++|-..|-.=||-..++-.+.++-+..|.|||
T Consensus 475 DaDmA~Ema~lTk~qIL~QAg~amLAQANq~pQ~VL~LLq 514 (514)
T PRK13588 475 DVDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
T ss_conf 5219999999999999999999999998256688998429
No 100
>PRK08411 flagellin; Reviewed
Probab=89.29 E-value=0.75 Score=23.82 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6109999999999999999999999999999999999646
Q gi|254780380|r 94 NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 94 nVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
++|.+.||.+|-.+|-.=||-..++-.+.+.-|..|.|||
T Consensus 534 DaDfA~Ema~lTK~qILqQAgtamLAQANq~pQ~VL~LLq 573 (573)
T PRK08411 534 DVDFASESANYSKANILAQSGSYAMAQANSVQQNVLRLLQ 573 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
T ss_conf 3529999999989999999999999987367488997339
No 101
>PRK08026 flagellin; Validated
Probab=89.19 E-value=0.83 Score=23.60 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56109999999999999999999999999999999999646
Q gi|254780380|r 93 PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 93 snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
-++|.+.||++|-..|-.=||-..++-.+.+.-|..|.|||
T Consensus 525 ~DaD~A~E~a~ltk~qILqQAgtamLAQANq~pQ~VL~LLq 565 (566)
T PRK08026 525 QDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQ 565 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf 85409999999999999999999999997127789999758
No 102
>PRK12808 flagellin; Provisional
Probab=89.18 E-value=0.77 Score=23.78 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56109999999999999999999999999999999999646
Q gi|254780380|r 93 PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 93 snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
-++|.++||++|-..|-.=||-..++-.+.+.-+..|.|+|
T Consensus 420 ~DaDmA~E~a~ltk~qILqQAgtamLAQANq~pq~vL~LLq 460 (460)
T PRK12808 420 EDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 460 (460)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 60659999999999999999999999996517478998419
No 103
>pfam00700 Flagellin_C Bacterial flagellin C-terminal helical region. Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.
Probab=88.85 E-value=1.1 Score=22.88 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5610999999999999999999999999999999999964
Q gi|254780380|r 93 PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132 (134)
Q Consensus 93 snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~ 132 (134)
-++|.++|++++...+-.+||...++..+.++ ++|+.+
T Consensus 47 ~D~D~Aee~t~l~~~qil~qas~a~~aqanql--slln~L 84 (84)
T pfam00700 47 EDVDPAEASTRVTKLQILLQASYALTAQANQL--SLLNLL 84 (84)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHC
T ss_conf 66509999999999999999999999998678--888649
No 104
>PRK12806 flagellin; Provisional
Probab=84.06 E-value=2.2 Score=21.40 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56109999999999999999999999999999999999646
Q gi|254780380|r 93 PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 93 snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
-++|.++||++|-..|-.=||-..++..+.+.-+..|.||-
T Consensus 434 ~DaDmA~E~s~ltk~qILqQA~~amLAQANq~pQ~VL~LL~ 474 (475)
T PRK12806 434 QDADYAAEMASLTKNQILQQAGTAMLAQANSLPQSVLSLLG 474 (475)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 50229999999999999999999999996507689998608
No 105
>PRK06663 flagellar hook-associated protein FlgL; Validated
Probab=82.14 E-value=2.4 Score=21.25 Aligned_cols=41 Identities=27% Similarity=0.358 Sum_probs=31.0
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3056109999999999999999999999999999999999646
Q gi|254780380|r 91 KYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 91 ~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
...++|++++++++...+-.|||-++++... +-.+++|-+|
T Consensus 380 ~i~DaD~a~~it~l~~~~~~~qAa~~~~a~i--~~~SLfdyLr 420 (420)
T PRK06663 380 KYTDLDVTKAITNLKMLELAHQVSLGVSAKI--MKTTLLDFLR 420 (420)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHCC
T ss_conf 3305239999999999999999999999987--0662887609
No 106
>PRK12584 flagellin A; Reviewed
Probab=82.13 E-value=2.5 Score=21.10 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5610999999999999999999999999999999999964
Q gi|254780380|r 93 PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132 (134)
Q Consensus 93 snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~ 132 (134)
-++|.+.||+++-..|-.=||-..++-.+.++-|..|.||
T Consensus 470 ~DaD~A~Ema~~tk~qIL~QAgtamLAQANq~pQ~VL~LL 509 (510)
T PRK12584 470 RDVDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
T ss_conf 8530899999999999999999999998617668898622
No 107
>PRK12687 flagellin; Reviewed
Probab=81.43 E-value=3.9 Score=20.14 Aligned_cols=43 Identities=9% Similarity=0.205 Sum_probs=39.1
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3056109999999999999999999999999999999999646
Q gi|254780380|r 91 KYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 91 ~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
+--+.|.+.|+++|...|-.=|+-+.++..+.+.-+..|.|+|
T Consensus 269 rI~DADmA~Esa~l~k~QilqQag~amLaqANq~pQ~vLsLlr 311 (311)
T PRK12687 269 QLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLFK 311 (311)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC
T ss_conf 8756659999999999999999999999998457599998619
No 108
>PRK08412 flgL flagellar hook-associated protein FlgL; Validated
Probab=77.21 E-value=4.1 Score=20.03 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 561099999999999999999999999999999
Q gi|254780380|r 93 PNVNVLVETADMRETNRLYMANLQTIKQSHDMM 125 (134)
Q Consensus 93 snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~ 125 (134)
=+.|+++||.+++.-+-+|||.++.....-+|.
T Consensus 740 ~D~D~AE~mm~ft~l~~~yQAmLas~~kI~QlS 772 (777)
T PRK08412 740 TGTDMAETYNKFSNLTNNYNAVLASTNKINQLS 772 (777)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 260799999999999999999999853113434
No 109
>PRK07701 flgL flagellar hook-associated protein FlgL; Validated
Probab=76.21 E-value=5.6 Score=19.33 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=31.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3056109999999999999999999999999999999999646
Q gi|254780380|r 91 KYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 91 ~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
..-+||.++|++++-..+-.|||.++++....+ .+++|.+|
T Consensus 261 ~i~D~D~a~a~~~l~~~q~~~qAa~~~~a~i~q--~SL~dylR 301 (301)
T PRK07701 261 DNEDVDLAEVITDLKTQENVYRAALAVGARIIQ--PSLVDFLR 301 (301)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHCC
T ss_conf 775545999999999999999999999998835--60988709
No 110
>PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=74.33 E-value=5 Score=19.55 Aligned_cols=33 Identities=6% Similarity=0.170 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 056109999999999999999999999999999
Q gi|254780380|r 92 YPNVNVLVETADMRETNRLYMANLQTIKQSHDM 124 (134)
Q Consensus 92 ~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m 124 (134)
.-++|+++|+++|...+-.|||..+++....+|
T Consensus 365 i~DaD~ae~~t~l~~~q~~~qAa~~~~aqi~q~ 397 (403)
T PRK08870 365 LEDLDYASAISEFEKQQAALQAAQQAFSKVQSL 397 (403)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 125479999999999999999999999988345
No 111
>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional
Probab=74.18 E-value=5 Score=19.58 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6109999999999999999999999999999
Q gi|254780380|r 94 NVNVLVETADMRETNRLYMANLQTIKQSHDM 124 (134)
Q Consensus 94 nVd~~~Em~~m~~a~r~yean~~~~~~~~~m 124 (134)
++|+++||++|...+-.|||-.+++....++
T Consensus 487 D~D~Ae~~t~lt~~qil~qAa~s~~aqi~ql 517 (523)
T PRK12717 487 DSDPAEATTRLTLQQTMLEASQQAFVKISQL 517 (523)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 3039999999999999999999999998574
No 112
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=57.29 E-value=15 Score=17.14 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 056109999999999999999999999999999999999646
Q gi|254780380|r 92 YPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 92 ~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
.-++|.++.++++-..+-+|||..+++....++ ++++.+|
T Consensus 278 ~eD~D~aeaisel~~~q~alqAa~~~faki~~l--SLfd~lR 317 (317)
T PRK08027 278 LVDVDWNSAISSYVMQQAALQASYKTFTDMQGM--SLFQLNR 317 (317)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHCC
T ss_conf 136589999999999999999999999998347--3987609
No 113
>PRK07192 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=56.99 E-value=15 Score=17.11 Aligned_cols=34 Identities=9% Similarity=0.128 Sum_probs=26.1
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3056109999999999999999999999999999
Q gi|254780380|r 91 KYPNVNVLVETADMRETNRLYMANLQTIKQSHDM 124 (134)
Q Consensus 91 ~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m 124 (134)
+.-+||+++++++|-..+-.|||..+++....++
T Consensus 266 ~i~d~D~a~a~t~l~~~q~~~qAs~~~~a~i~~l 299 (305)
T PRK07192 266 DLQDLDYAEAYTDLSNQMAALEATQKTFVKVNSL 299 (305)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7545579999999999999999999999988167
No 114
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=51.70 E-value=18 Score=16.64 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 05610999999999999999999999999999
Q gi|254780380|r 92 YPNVNVLVETADMRETNRLYMANLQTIKQSHD 123 (134)
Q Consensus 92 ~snVd~~~Em~~m~~a~r~yean~~~~~~~~~ 123 (134)
.-++|+++++++|...+-+|||.++++....+
T Consensus 249 ieD~D~Aeai~~l~~~~~~lqAal~~~aki~q 280 (287)
T PRK08073 249 IEDVDLAVAISDLAYINATYEATLKAVSTMSK 280 (287)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 55546999999999999999999999998705
No 115
>pfam00798 Arena_glycoprot Arenavirus glycoprotein.
Probab=42.43 E-value=26 Score=15.85 Aligned_cols=44 Identities=34% Similarity=0.327 Sum_probs=38.6
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23333056109999999999999999999999999999999999646
Q gi|254780380|r 87 SGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 87 ~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
+-.|..-|.|..+|.-||+ |.|+=|-++|++-++-.+..|++++
T Consensus 283 NTAvAKCN~nHdsEFCDML---RLFDfNKnAI~tL~~~t~~~lnll~ 326 (473)
T pfam00798 283 NTAVAKCNLNHDSEFCDML---RLFDFNKNAIKTLNDETKNALNLLT 326 (473)
T ss_pred CHHHHHHCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6787653256658887899---9877409999998888899999999
No 116
>pfam12166 DUF3595 Protein of unknown function (DUF3595). This family of proteins is functionally uncharacterized.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=26.21 E-value=50 Score=14.38 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=36.8
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 330561099999999999999999999999999999999996469
Q gi|254780380|r 90 VKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD 134 (134)
Q Consensus 90 v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r~ 134 (134)
-+.||+|-.-++..=|..-|. .+-+.....++.++++|.||
T Consensus 365 eelPn~d~lL~LC~dIylaRe----~gdl~lEe~Ly~~LI~lyRS 405 (416)
T pfam12166 365 EELPNPDRLLKLCLDIYLARE----VGDLILEELLYAELIDLYRS 405 (416)
T ss_pred CCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHCC
T ss_conf 158984899999999999986----08278799999999999779
No 117
>TIGR01919 hisA-trpF bifunctional HisA/TrpF protein; InterPro: IPR010188 This entry represents a bifunctional protein possessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities . Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC Gram-positive). The enzyme is closely related to the monofunctional HisA proteins and in Actinobacteria, the classical monofunctional TrpF is generally absent.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0004640 phosphoribosylanthranilate isomerase activity, 0000105 histidine biosynthetic process, 0000162 tryptophan biosynthetic process, 0005737 cytoplasm.
Probab=24.38 E-value=34 Score=15.26 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=19.1
Q ss_pred CCHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 250233330561099999999999
Q gi|254780380|r 84 ANASGIVKYPNVNVLVETADMRET 107 (134)
Q Consensus 84 Ad~~G~v~~snVd~~~Em~~m~~a 107 (134)
--++|.+-.|||+|..|..+-.-|
T Consensus 174 v~KDG~lsGPN~~LL~eVA~~TDA 197 (246)
T TIGR01919 174 VAKDGTLSGPNVELLAEVAERTDA 197 (246)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 123786678528999998862288
Done!