Query gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter asiaticus str. psy62] Match_columns 134 No_of_seqs 128 out of 1991 Neff 6.5 Searched_HMMs 13730 Date Wed Jun 1 03:16:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780380.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 7.6 47 0.0034 12.2 0.3 24 110-133 22-45 (50) 2 d1rz4a2 a.118.1.18 (A:2-131) E 7.3 62 0.0045 11.6 2.6 35 74-121 17-53 (130) 3 d2j0na1 a.250.1.1 (A:144-314) 7.1 64 0.0046 11.5 1.5 44 87-130 99-152 (171) 4 d2daha1 a.5.2.1 (A:8-48) Ubiqu 5.1 84 0.0061 10.9 1.5 22 111-132 17-38 (41) 5 d2bwba1 a.5.2.1 (A:328-371) DS 4.9 86 0.0063 10.8 1.9 23 110-132 19-41 (44) 6 d1veja1 a.5.2.1 (A:8-68) 49314 3.1 1.3E+02 0.0091 10.0 1.2 22 111-132 37-58 (61) 7 d2b4jc1 a.48.4.1 (C:346-426) P 3.0 1.3E+02 0.0096 9.9 1.5 30 99-128 49-78 (81) 8 d2iaza1 a.281.1.2 (A:1-111) Hy 3.0 1.3E+02 0.0096 9.9 2.8 24 92-115 73-96 (111) 9 d2fupa1 a.47.5.1 (A:1-130) Hyp 2.8 1.5E+02 0.011 9.6 2.0 30 104-133 101-130 (130) 10 d1p3da1 c.5.1.1 (A:11-106) UDP 2.6 1.5E+02 0.011 9.6 -0.1 10 8-17 14-23 (96) No 1 >d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Probab=7.64 E-value=47 Score=12.20 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=16.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999646 Q gi|254780380|r 110 LYMANLQTIKQSHDMMTTTLDLLR 133 (134) Q Consensus 110 ~yean~~~~~~~~~m~~~~l~i~r 133 (134) -.++|+.++..+..-.+.+++++. T Consensus 22 d~~~Ni~AL~~t~GdV~~Aie~Ll 45 (50) T d2dnaa1 22 NYNANLQALIATDGDTNAAIYKLK 45 (50) T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHH T ss_pred CHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 799999999993998999999998 No 2 >d1rz4a2 a.118.1.18 (A:2-131) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=7.30 E-value=62 Score=11.57 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=22.9 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHH Q ss_conf 0001432111250233330561099999999999999--99999999999 Q gi|254780380|r 74 VEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRL--YMANLQTIKQS 121 (134) Q Consensus 74 ~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~--yean~~~~~~~ 121 (134) .-+|+|. |+...++-|+.....+. .+||+.+++.. T Consensus 17 idRYNPe-------------~l~~Le~YV~~Q~~~~~Ydl~aNLalLKLY 53 (130) T d1rz4a2 17 IDRYNPE-------------NLATLERYVETQAKENAYDLEANLAVLKLY 53 (130) T ss_dssp GGGGCGG-------------GHHHHHHHHHHHHHHTCCCHHHHHHHHHHH T ss_pred CCCCCHH-------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 4447878-------------889999999999980544299999999999 No 3 >d2j0na1 a.250.1.1 (A:144-314) Invasin IpaD {Shigella flexneri [TaxId: 623]} Probab=7.05 E-value=64 Score=11.50 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=28.5 Q ss_pred HHHHHCCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 233330561099999999999----------99999999999999999999999 Q gi|254780380|r 87 SGIVKYPNVNVLVETADMRET----------NRLYMANLQTIKQSHDMMTTTLD 130 (134) Q Consensus 87 ~G~v~~snVd~~~Em~~m~~a----------~r~yean~~~~~~~~~m~~~~l~ 130 (134) -++|=+||..+..+|...+.. .-.|+|=.+.|+..++-+++.+. T Consensus 99 g~~~I~~d~~pi~~~~~s~~~~~~~~~~~l~~a~yqaw~a~f~a~~~~i~s~~q 152 (171) T d2j0na1 99 GGYVVSINMTPIDNMLKSLDNLGGNGEVVLDNAKYQAWNAGFSAEDETMKNNLQ 152 (171) T ss_dssp TEEEEEECCHHHHHHHHHHHHSCCSSEEEEEHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 964797485189999874127899876331499999999998889988986899 No 4 >d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Probab=5.05 E-value=84 Score=10.87 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999964 Q gi|254780380|r 111 YMANLQTIKQSHDMMTTTLDLL 132 (134) Q Consensus 111 yean~~~~~~~~~m~~~~l~i~ 132 (134) .+.|+.++..+..-..++++++ T Consensus 17 ~~~Ni~AL~~t~Gdv~~Aie~L 38 (41) T d2daha1 17 REANLQALIATGGDVDAAVEKL 38 (41) T ss_dssp HHHHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHH T ss_conf 8999999998399899999999 No 5 >d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=4.91 E-value=86 Score=10.81 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=16.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999964 Q gi|254780380|r 110 LYMANLQTIKQSHDMMTTTLDLL 132 (134) Q Consensus 110 ~yean~~~~~~~~~m~~~~l~i~ 132 (134) -.++|+.++..+..-.+.+++++ T Consensus 19 d~~~Ni~AL~~t~GdV~~Aie~L 41 (44) T d2bwba1 19 DFDRNVAALRRSGGSVQGALDSL 41 (44) T ss_dssp CHHHHHHHHHHHTTCHHHHHHHH T ss_pred CHHHHHHHHHHCCCCHHHHHHHH T ss_conf 68999999999499899999998 No 6 >d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Probab=3.13 E-value=1.3e+02 Score=9.98 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999964 Q gi|254780380|r 111 YMANLQTIKQSHDMMTTTLDLL 132 (134) Q Consensus 111 yean~~~~~~~~~m~~~~l~i~ 132 (134) .++|+.++.....-...+++++ T Consensus 37 ~~~Nl~AL~~t~Gdv~~Aie~L 58 (61) T d1veja1 37 RDANLQALVATDGDIHAAIEML 58 (61) T ss_dssp HHHHHHHHHHTTSCHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHH T ss_conf 8999999999189899999998 No 7 >d2b4jc1 a.48.4.1 (C:346-426) PC4 and SFRS1-interacting protein, PSIP1 {Human (Homo sapiens) [TaxId: 9606]} Probab=3.01 E-value=1.3e+02 Score=9.88 Aligned_cols=30 Identities=10% Similarity=0.074 Sum_probs=24.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999 Q gi|254780380|r 99 VETADMRETNRLYMANLQTIKQSHDMMTTT 128 (134) Q Consensus 99 ~Em~~m~~a~r~yean~~~~~~~~~m~~~~ 128 (134) .|+|+.|---|-|.+|.++.+-+...+.+- T Consensus 49 ~e~V~tikklRry~gn~~Ir~kA~~ly~kf 78 (81) T d2b4jc1 49 TEMITTLKKIRRFKVSQVIMEKSTMLYNKF 78 (81) T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 399999999999745299999999999975 No 8 >d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372 {Streptococcus pneumoniae [TaxId: 1313]} Probab=3.00 E-value=1.3e+02 Score=9.86 Aligned_cols=24 Identities=4% Similarity=-0.103 Sum_probs=14.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 056109999999999999999999 Q gi|254780380|r 92 YPNVNVLVETADMRETNRLYMANL 115 (134) Q Consensus 92 ~snVd~~~Em~~m~~a~r~yean~ 115 (134) +..++....+.+.+.|++.+..=+ T Consensus 73 ~~~i~~n~~i~~~~~Ae~~l~~ll 96 (111) T d2iaza1 73 GKQIQGNSLLSEFFTKQQQLAIYL 96 (111) T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 999866899999999999999999 No 9 >d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas aeruginosa [TaxId: 287]} Probab=2.77 E-value=1.5e+02 Score=9.64 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999999999646 Q gi|254780380|r 104 MRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134) Q Consensus 104 m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134) +...+..=+.|-+.|...-+..+++|+|+| T Consensus 101 ~~~~k~~N~~Ng~Li~~~~~~~~~~L~iLr 130 (130) T d2fupa1 101 LERCQQANLRNGRIIRANQASTGSLLNILR 130 (130) T ss_dssp HHHHHHHHHHHHHC--CTTHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999999999999999998649 No 10 >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Probab=2.59 E-value=1.5e+02 Score=9.62 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=0.0 Q ss_pred HHHHHHHHHH Q ss_conf 8521568999 Q gi|254780380|r 8 AHIANSGLAV 17 (134) Q Consensus 8 i~Ia~SgL~A 17 (134) +.|.++||++ T Consensus 14 iGigG~GMs~ 23 (96) T d1p3da1 14 IGIGGAGMSG 23 (96) T ss_dssp ETTTSTTHHH T ss_pred EEECHHHHHH T ss_conf 9877999999 Done!