RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780380|ref|YP_003064793.1| flagellar basal body rod
protein FlgC [Candidatus Liberibacter asiaticus str. psy62]
         (134 letters)



>gnl|CDD|139220 PRK12782, flgC, flagellar basal body rod protein FlgC; Reviewed.
          Length = 138

 Score =  184 bits (469), Expect = 7e-48
 Identities = 76/135 (56%), Positives = 102/135 (75%), Gaps = 3/135 (2%)

Query: 2   DYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH---GS 58
           D L+AS+ IA+SGL  QS R++++SEN+ANA++TG TPG+DPY RKT++F   +    G+
Sbjct: 3   DPLLASSRIASSGLEAQSTRLRVVSENLANAQSTGRTPGADPYARKTVTFRAELDRAAGA 62

Query: 59  GGVRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTI 118
             VRVK+IGVD + F  E+DPG+P A+ +G VK PNVN+L+E ADMRE NR Y ANLQ I
Sbjct: 63  ASVRVKEIGVDTAPFRVEYDPGNPAADENGYVKLPNVNMLIEMADMREANRSYEANLQVI 122

Query: 119 KQSHDMMTTTLDLLR 133
           KQ+  M+  T+DLLR
Sbjct: 123 KQARAMVAMTIDLLR 137


>gnl|CDD|180197 PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.
          Length = 135

 Score =  164 bits (418), Expect = 6e-42
 Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 4/133 (3%)

Query: 4   LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM---HGSGG 60
           L +S +IA SGL+ QS R+ +IS NIANA +T    G DPYRRK + F   +    G+GG
Sbjct: 3   LFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDG-DPYRRKQVVFAAELDPGQGTGG 61

Query: 61  VRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQ 120
           V+V KI  DQS F   +DPGHP A+A G VKYPNVNV+VE  DM   +R Y AN++ +  
Sbjct: 62  VKVAKIVEDQSPFKLVYDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNA 121

Query: 121 SHDMMTTTLDLLR 133
           +  MM  TL + +
Sbjct: 122 AKSMMQKTLTIGQ 134


>gnl|CDD|130462 TIGR01395, FlgC, flagellar basal-body rod protein FlgC.  This model
           represents FlgC, one of several components of bacterial
           flagella that share a domain described by pfam model
           pfam00460. FlgC is part of the basal body.
          Length = 135

 Score =  128 bits (324), Expect = 4e-31
 Identities = 56/131 (42%), Positives = 74/131 (56%), Gaps = 8/131 (6%)

Query: 10  IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH-------GSGGVR 62
           ++ S L+ Q  RM ++S N+ANA +T  TP  DPYRR+   FE  +        G  GV+
Sbjct: 6   VSASALSAQRVRMNVVSSNLANADST-RTPAGDPYRRRRPVFEAELFQDRASRPGGSGVK 64

Query: 63  VKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSH 122
           V KI  D S F   +DP HP A+A G VK PNVNV+ E  DM E +R Y AN+Q    + 
Sbjct: 65  VAKIVEDDSPFKLVYDPTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAK 124

Query: 123 DMMTTTLDLLR 133
            M   TL++ R
Sbjct: 125 SMFLRTLEIGR 135


>gnl|CDD|183637 PRK12632, flgC, flagellar basal body rod protein FlgC; Provisional.
          Length = 130

 Score =  110 bits (276), Expect = 1e-25
 Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 10/136 (7%)

Query: 1   MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH---G 57
           M     S  ++ SG+  Q+ R++ +SENIANA    DTPG   YRRKT+SF+E      G
Sbjct: 1   MTDFSKSLSVSASGMRAQALRLRHVSENIANA----DTPG---YRRKTVSFQEARDFDPG 53

Query: 58  SGGVRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQT 117
           SG V    + +D+S     +DP HP+A+ +G     NV+++VE AD RE  R Y ANL+ 
Sbjct: 54  SGLVSTGPVRLDRSELPRIYDPSHPLADETGYYDGSNVDLVVEIADAREAQRSYEANLRM 113

Query: 118 IKQSHDMMTTTLDLLR 133
             Q+  M ++ LDLLR
Sbjct: 114 FDQARQMSSSLLDLLR 129


>gnl|CDD|183635 PRK12630, flgC, flagellar basal body rod protein FlgC; Provisional.
          Length = 143

 Score = 94.9 bits (236), Expect = 6e-21
 Identities = 51/137 (37%), Positives = 70/137 (51%), Gaps = 13/137 (9%)

Query: 7   SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHG--------- 57
           +  I+ SGL+ +  RM  I+ NIANA TT    G  PY+RK   F+E ++          
Sbjct: 6   TMRISASGLSAERLRMDTIASNIANATTTRTADGG-PYKRKIAVFQENLNKELNKKNGAY 64

Query: 58  ---SGGVRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMAN 114
                GV+   I  D+S F + +DP HP A+  G V  PNVNVL E ADM  + R Y AN
Sbjct: 65  EKKLYGVKAVGIVEDKSPFRKVYDPSHPDADEEGYVSMPNVNVLNEMADMMASTRSYEAN 124

Query: 115 LQTIKQSHDMMTTTLDL 131
           +  I     M +  L++
Sbjct: 125 VTAINAEKSMFSKALEI 141


>gnl|CDD|183636 PRK12631, flgC, flagellar basal body rod protein FlgC; Provisional.
          Length = 138

 Score = 72.3 bits (177), Expect = 4e-14
 Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 8/129 (6%)

Query: 10  IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM-------HGSGGVR 62
           +A SG++ QS R+   + NIANA +   +     YR +   FE  M         S GV 
Sbjct: 9   VAGSGMSAQSVRLNTTASNIANADSVSSSVD-KTYRARHPIFEAEMAKAQSQQQASQGVA 67

Query: 63  VKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSH 122
           VK I       ++E+ P HP+A+A G +  PNVNV+ E ADM   +R Y  N+Q  + + 
Sbjct: 68  VKGIVESDKPLLKEYSPDHPMADADGFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAK 127

Query: 123 DMMTTTLDL 131
            M+  TL +
Sbjct: 128 SMLQQTLRM 136


>gnl|CDD|180702 PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed.
          Length = 141

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 10/131 (7%)

Query: 10  IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM--------HGSGGV 61
           IA S +  Q+ R+  ++ N+ANA +   +  +  Y+ ++  F  V          G  G 
Sbjct: 9   IAGSAMTAQTIRLNTVASNLANAESPAASA-ATAYKARSPVFAAVYSARTLADPRGVQGA 67

Query: 62  RVKKIGVDQST-FVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQ 120
           +V+ + V Q    V+ ++P +P+AN  G V YP+VNV+ E ADM   +R +  N++ +  
Sbjct: 68  QVQVLDVVQVGGSVKRYEPNNPLANPQGYVFYPDVNVVEEMADMMSASRSFETNVEVLNS 127

Query: 121 SHDMMTTTLDL 131
              M  + L L
Sbjct: 128 VKSMQQSLLKL 138


>gnl|CDD|183634 PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional.
          Length = 135

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 9/130 (6%)

Query: 10  IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTIS--FEEVMHGSG----GVRV 63
           +A S L  QS R+  I+ N+ANA +     GS     K I   F+            V V
Sbjct: 9   VAGSALHAQSVRLSTIASNLANADSVA---GSAEATYKPIEPIFQAQQSRQDPSLTSVNV 65

Query: 64  KKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHD 123
           K+I    +  +  ++PGHP+A+A G V  P+V+ + +  +M   +R Y A ++ +  + +
Sbjct: 66  KEITTTNAPPIRRYEPGHPLADADGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKE 125

Query: 124 MMTTTLDLLR 133
           +   TL + R
Sbjct: 126 LALATLTMGR 135


>gnl|CDD|79089 PRK12628, flgC, flagellar basal body rod protein FlgC; Provisional.
          Length = 140

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 10  IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS---------GG 60
           IA S +  ++ R+   + N++NA     +P  + Y+ K   F+ V   +          G
Sbjct: 9   IAASAMTAETVRLTTSAGNMSNANVEAGSP-DEVYQAKYPVFKSVQENANQWMGEQIKAG 67

Query: 61  VRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQ 120
           V++  I    +     +DP  P+A+  G V   N+N + E A++   +R Y  N++ +  
Sbjct: 68  VKLDGIYESDAEPHRRYDPNSPIADKDGFVYTSNINYVEEMANIISASRSYQMNIELLNT 127

Query: 121 SHDMMTTTLDL 131
           +  +M  TL L
Sbjct: 128 TKQLMQRTLQL 138


>gnl|CDD|163298 TIGR03506, FlgEFG_subfam, fagellar hook-basal body proteins.
          This model encompasses three closely related flagellar
          proteins usually denoted FlgE, FlgF and FlgG. The names
          have often been mis-assigned, however. Three equivalog
          models, TIGR02489, TIGR02490 and TIGR00488,
          respectively, separate the individual forms into three
          genome-context consistent groups. The major differences
          between these genes are architectural, with variable
          central sections between relatively conserved N- and
          C-terminal domains. More distantly related are two
          other flagellar apparatus familis, FlgC (TIGR01395)
          which consists of little else but the N-and C-terminal
          domains and FlgK (TIGR02492) with a substantial but
          different central domain.
          Length = 231

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 15/71 (21%)

Query: 9  HIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS--------GG 60
          + A SGL  QS+ + +I+ NIAN  TTG       ++R    F++++  S        GG
Sbjct: 4  YTALSGLNAQSSALDVIANNIANVNTTG-------FKRSRAEFQDLLSQSGSGSGQVGGG 56

Query: 61 VRVKKIGVDQS 71
          VR   +  D S
Sbjct: 57 VRASGVAQDFS 67


>gnl|CDD|180198 PRK05682, flgE, flagellar hook protein FlgE; Validated.
          Length = 407

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 9  HIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVKKIG 67
          + A SGL   S R+ +I  NIANA TTG       ++     F ++   S G    ++G
Sbjct: 4  NTAVSGLNAASNRLDVIGNNIANANTTG-------FKSSRAEFADLYANSAGTNPTQVG 55



 Score = 30.2 bits (69), Expect = 0.16
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 94  NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131
           NV++  E  +M    R Y AN +TIK    ++ T ++L
Sbjct: 369 NVDLSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVNL 406


>gnl|CDD|180196 PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed.
          Length = 137

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 17/140 (12%)

Query: 1   MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGG 60
           +D    +       L +++ R ++I+ NIANA    DTPG   Y+ + I FE V+     
Sbjct: 2   LDSFDKALRFLQEALNLRAQRQEVIASNIANA----DTPG---YKARDIDFESVLAVMIF 54

Query: 61  VRVKKIGVDQSTFVEEFDPGHPVANASGIVKYP----------NVNVLVETADMRETNRL 110
            R    G++ +   E   P     +    + Y            V++ VE  +  + + +
Sbjct: 55  GRQSGSGLELARTSERHIPAQATTSPKAELLYRDPHQPSNDGNTVDMDVERTEFAKNSIM 114

Query: 111 YMANLQTIKQSHDMMTTTLD 130
           Y A L  +      + + + 
Sbjct: 115 YQALLTALNGKFKGLMSVIQ 134


>gnl|CDD|183686 PRK12691, flgG, flagellar basal body rod protein FlgG; Reviewed.
          Length = 262

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 7/47 (14%)

Query: 9  HIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55
           IA +G+A Q   +++IS NIAN  TTG       ++R+   F++++
Sbjct: 5  SIAATGMAAQQLNVEVISNNIANMNTTG-------FKRQRAEFQDLL 44



 Score = 30.3 bits (69), Expect = 0.17
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 94  NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133
           NV+V+ E  D+    R Y  N + I  + +M+ TT   LR
Sbjct: 223 NVDVVKEITDLITAQRAYEMNSKVITAADEMLQTTSQNLR 262


>gnl|CDD|131541 TIGR02488, flgG_G_neg, flagellar basal-body rod protein FlgG,
          Gram-negative bacteria.  This family consists of the
          FlgG protein of the flagellar apparatus in the
          Proteobacteria and spirochetes.
          Length = 259

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 7  SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56
          +   A +G+  Q   M +IS N+AN  TTG       +++    FE++++
Sbjct: 1  ALWTAATGMNAQQTNMDVISNNLANVNTTG-------FKKDRAEFEDLLY 43



 Score = 33.1 bits (76), Expect = 0.021
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 78  DPGHPVANASGIVKY-----PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132
             G P  +  G ++       NVNV+ E  DM    R Y  N + I+ S  M+ T   LL
Sbjct: 200 QIGTPGLDGFGKLRQGFLEASNVNVVQEMVDMITAQRAYEMNSKAIQASDQMLQTVSQLL 259


>gnl|CDD|162337 TIGR01396, FlgB, flagellar basal-body rod protein FlgB.  This
          model represents FlgB, one of several components of
          bacterial flagella that share a domain described by
          pfam model pfam00460. FlgB is part of the basal body.
          Length = 131

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 7/42 (16%)

Query: 14 GLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55
           L V+S R ++I+ NIAN     DTPG   Y+ K +SFE  +
Sbjct: 11 ALDVRSLRQEVIANNIANV----DTPG---YKAKDVSFEAEL 45


>gnl|CDD|181014 PRK07521, flgK, flagellar hook-associated protein FlgK;
          Validated.
          Length = 483

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 5  IASA-HIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRV 63
          ++SA + A SGL   S +  ++S NIANA T G       Y R+  S      G  G +V
Sbjct: 3  LSSALNTAQSGLTATSRQTSVVSRNIANAGTPG-------YSRREASLVS---GPAGGQV 52

Query: 64 KKIGVDQSTFV 74
            I   Q   +
Sbjct: 53 VGISRAQDPAL 63


>gnl|CDD|183688 PRK12694, flgG, flagellar basal body rod protein FlgG; Reviewed.
          Length = 260

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)

Query: 4  LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56
          +  S  IA +GL  Q A+M +IS N+AN  T G       ++R    FE++++
Sbjct: 1  MNRSLWIAKTGLNAQQAQMDVISNNLANVSTNG-------FKRSRAVFEDLLY 46



 Score = 30.9 bits (70), Expect = 0.12
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 79  PGHPVANASGIVKY-----PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTT 127
              P  N +G +        NVNV+ E  +M +T R Y  N + +  S  M+  
Sbjct: 203 VSQPGLNGAGTLNQGYVEASNVNVVEELVNMIQTQRAYEINSKAVTTSDQMLQR 256


>gnl|CDD|148188 pfam06429, DUF1078, Domain of unknown function (DUF1078).  This
           family consists of a number of C-terminal domains of
           unknown function. This domain seems to be specific to
           flagellar basal-body rod and flagellar hook proteins in
           which pfam00460 is often present at the extreme N
           terminus.
          Length = 39

 Score = 35.9 bits (84), Expect = 0.003
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 93  PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131
            NV+++ E  ++ E  R Y AN + I+ + +M+ T L+L
Sbjct: 1   SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL 39


>gnl|CDD|183687 PRK12693, flgG, flagellar basal body rod protein FlgG;
          Provisional.
          Length = 261

 Score = 35.6 bits (83), Expect = 0.005
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 7/52 (13%)

Query: 4  LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55
          +I +  IA +GL  Q   + +IS N+AN  TTG       +++    FE+++
Sbjct: 1  MIRALWIAKTGLDAQQTNIDVISNNLANVNTTG-------FKKSRAVFEDLL 45



 Score = 29.8 bits (68), Expect = 0.23
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 94  NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132
           NVNV+ E  +M    R Y  N + I  +  M+     LL
Sbjct: 223 NVNVVEELVNMITGQRAYEMNSKAISTADQMLQYVNQLL 261


>gnl|CDD|183768 PRK12818, flgG, flagellar basal body rod protein FlgG; Reviewed.
          Length = 256

 Score = 34.7 bits (80), Expect = 0.008
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 10/55 (18%)

Query: 4  LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTI---SFEEVM 55
          +I   + A SG+    A+  +I+ N+AN  T G       Y+   +   SFE+V+
Sbjct: 1  MIRGLYTAVSGMITLEAKQDVITNNLANVNTVG-------YKSDNLAFKSFEDVL 48


>gnl|CDD|183767 PRK12817, flgG, flagellar basal body rod protein FlgG; Reviewed.
          Length = 260

 Score = 34.3 bits (79), Expect = 0.011
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 7/45 (15%)

Query: 11 ANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55
          + SG+  Q  ++  IS N+AN  TTG       Y+R+ +SF +++
Sbjct: 8  SKSGMNAQQEKLDSISNNLANVNTTG-------YKREDVSFSDLV 45


>gnl|CDD|183630 PRK12623, flgB, flagellar basal body rod protein FlgB;
          Provisional.
          Length = 131

 Score = 32.5 bits (74), Expect = 0.033
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 7/40 (17%)

Query: 14 GLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEE 53
          GL   S R ++IS NIAN  T G       Y+R  ++FEE
Sbjct: 19 GLDASSYRGKVISNNIANVNTKG-------YKRHYVTFEE 51


>gnl|CDD|162886 TIGR02492, flgK_ends, flagellar hook-associated protein FlgK.
          The flagellar hook-associated protein FlgK of bacterial
          flagella has conserved N- and C-terminal domains. The
          central region is highly variable in length and
          sequence, and often contains substantial runs of
          low-complexity sequence. This model is built from an
          alignment of FlgK sequences with the central region
          excised. Note that several other proteins of the
          flagellar apparatus also are homologous in the N- and
          C-terminal regions to FlgK, but are excluded from this
          model.
          Length = 322

 Score = 31.9 bits (73), Expect = 0.049
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 10 IANSGLAVQSARMQIISENIANARTTG 36
          IA SGL+     + + S NIANA T G
Sbjct: 5  IAKSGLSASQIALSVTSNNIANANTPG 31


>gnl|CDD|183631 PRK12625, flgB, flagellar basal body rod protein FlgB;
          Provisional.
          Length = 132

 Score = 31.7 bits (72), Expect = 0.064
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 7/41 (17%)

Query: 15 LAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55
          L +++ R ++IS NIANA    DTP    Y+ + + F   M
Sbjct: 16 LGIRAQRAEVISSNIANA----DTPH---YKARDVDFSAAM 49


>gnl|CDD|180703 PRK06803, flgE, flagellar hook protein FlgE; Validated.
          Length = 402

 Score = 31.3 bits (71), Expect = 0.075
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 7  SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS--GGVRVK 64
          S +IA SGL   + ++  IS NIAN+ T G       ++     F  + +G   GGV V 
Sbjct: 2  SFNIALSGLNATTQQLNTISNNIANSSTKG-------FKGSRTEFSSIYNGGQPGGVEVS 54

Query: 65 KI 66
           +
Sbjct: 55 SV 56


>gnl|CDD|183632 PRK12626, flgB, flagellar basal body rod protein FlgB;
          Provisional.
          Length = 162

 Score = 31.1 bits (70), Expect = 0.092
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 1  MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS 58
          +D L A        L V++ R +++S NIANA    DTPG   YR + + F   +  +
Sbjct: 2  LDKLDAEFAFGRQALDVRAYRQELLSSNIANA----DTPG---YRARDVDFASTLARA 52


>gnl|CDD|183643 PRK12642, flgF, flagellar basal body rod protein FlgF; Reviewed.
          Length = 241

 Score = 30.8 bits (70), Expect = 0.12
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 10/54 (18%)

Query: 14 GLAVQSA---RMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVK 64
           L+ Q A   R+  I++N+AN  T G       +R   + F+ V+  +   +V 
Sbjct: 8  ALSSQMALEKRLDTIADNVANVNTVG-------FRATEVKFDTVVSDTASKKVA 54


>gnl|CDD|183685 PRK12690, flgF, flagellar basal body rod protein FlgF; Reviewed.
          Length = 238

 Score = 30.8 bits (70), Expect = 0.12
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 10/49 (20%)

Query: 15 LAVQSA---RMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGG 60
          L  QS     MQ+++ NIANA TTG       +RR+ + F E +     
Sbjct: 9  LTRQSGLMREMQVVANNIANASTTG-------FRREGLVFSEYVKSLDS 50



 Score = 27.7 bits (62), Expect = 1.0
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 82  PVANAS---GIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD 134
           P   A    G ++  NVN + E A M E  R Y      + +  + + TT+  L  
Sbjct: 183 PAEGARLLQGFLEGSNVNPVSEIARMIEVQRAYELGQSFLDREDERIRTTIRTLGQ 238


>gnl|CDD|181099 PRK07739, flgK, flagellar hook-associated protein FlgK;
          Validated.
          Length = 507

 Score = 30.4 bits (69), Expect = 0.15
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 10 IANSGLAVQSARMQIISENIANARTTGDT 38
           A  GL  Q A + +   NIANA T G T
Sbjct: 10 TARRGLFAQQAALYVTGHNIANANTPGYT 38


>gnl|CDD|171613 PRK12621, flgB, flagellar basal body rod protein FlgB; Provisional.
          Length = 136

 Score = 30.1 bits (68), Expect = 0.19
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)

Query: 18  QSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGV--RVKKIGVDQSTFVE 75
           Q  R  ++  N+AN  T G       Y+ + + FE+ +  + G+  + K    +++    
Sbjct: 19  QLQRQNVVMSNLANVNTPG-------YKPRELEFEKELQAALGLDAKGKMTRTEKNHLPA 71

Query: 76  EFDPGHPVANASGIVK------YPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129
            FDP       S   K         V++  E A M +    Y A    IK++ + + T +
Sbjct: 72  VFDPEGFEPEWSKAFKPRVVHGEDRVDLDKEMAKMAKNTLQYNALATVIKKNFEGLKTII 131


>gnl|CDD|183629 PRK12622, flgB, flagellar basal body rod protein FlgB;
          Provisional.
          Length = 135

 Score = 29.1 bits (65), Expect = 0.37
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%)

Query: 1  MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFE 52
          M+    S  +++  L V S R  +I++NIAN     DTP    ++R  ++FE
Sbjct: 1  MNIFERSVDLSHRYLDVLSLRQSVIADNIANV----DTPN---FKRSKVTFE 45


>gnl|CDD|180205 PRK05691, PRK05691, peptide synthase; Validated.
          Length = 4334

 Score = 29.0 bits (65), Expect = 0.43
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 78   DPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANL 115
            DPG P      I++     VLV +A  RE  R  +  L
Sbjct: 3801 DPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDEL 3838


>gnl|CDD|183766 PRK12816, flgG, flagellar basal body rod protein FlgG; Reviewed.
          Length = 264

 Score = 29.0 bits (65), Expect = 0.43
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 79  PGHPVANA-----SGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133
           PG P +        G ++  NV+++ E   M    R Y  N + I+ S +M+ T  +L R
Sbjct: 205 PGIPGSEGFGRVLQGFLEMSNVSIVEEMVTMIVAQRAYEINSKAIQTSDNMLGTANNLKR 264



 Score = 25.2 bits (55), Expect = 5.9
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 7/46 (15%)

Query: 11 ANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56
          A SG+  Q   +  I+ N+AN  TTG       +++    FE++++
Sbjct: 8  AASGMNAQQFNIDTIANNLANVNTTG-------FKKIRAEFEDLIY 46


>gnl|CDD|180697 PRK06797, flgB, flagellar basal body rod protein FlgB; Reviewed.
          Length = 135

 Score = 28.8 bits (64), Expect = 0.50
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 22/118 (18%)

Query: 8   AHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVK--- 64
           + + +    + + R   +S NIANA T G       Y+ + ++F E M+ S  +      
Sbjct: 6   SDVGHYMNYLVTKR-NTVSSNIANANTPG-------YKAQDVTFAEQMNKSSALYKSNAA 57

Query: 65  --KIGVDQSTFVEEFDPGHPVANASGIVKYP---------NVNVLVETADMRETNRLY 111
             K   D     E   P     N    ++           +V+V  E  D+ + N+LY
Sbjct: 58  DLKSNPDLYQTNEMHLPTVNTKNTYAKIQTKSMQTNKDGNSVDVTTEMLDLMKANQLY 115


>gnl|CDD|139158 PRK12692, flgG, flagellar basal body rod protein FlgG; Reviewed.
          Length = 262

 Score = 28.7 bits (64), Expect = 0.57
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 10 IANSGLAVQSARMQIISENIANARTTG 36
          IA +G++ Q   +++I+ NIAN  TTG
Sbjct: 6  IAATGMSAQQLNLEVIANNIANLNTTG 32


>gnl|CDD|168340 PRK06003, flgB, flagellar basal body rod protein FlgB; Reviewed.
          Length = 126

 Score = 28.4 bits (64), Expect = 0.59
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 8/42 (19%)

Query: 19 SARMQIISENIANARTTGDTPGSDPYRRKTIS-FEEVMHGSG 59
          S R   ++ NIANA    +TPG   YR + +  F +V+  +G
Sbjct: 18 SVRQATVAGNIANA----NTPG---YRARDVQPFADVLDKTG 52


>gnl|CDD|183633 PRK12627, flgB, flagellar basal body rod protein FlgB;
          Provisional.
          Length = 128

 Score = 28.2 bits (63), Expect = 0.63
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 11/54 (20%)

Query: 13 SGLAVQSA-RMQIISENIANARTTGDTPGSDPYR-RKTISFEEVM--HGSGGVR 62
          S +A  +  R  +++ N+ANA    DTPG   YR R    F E     G+ G+R
Sbjct: 12 SAMARHAGERQAVVARNVANA----DTPG---YRARDLADFAESYRAEGTTGMR 58


>gnl|CDD|168176 PRK05683, flgK, flagellar hook-associated protein FlgK;
          Validated.
          Length = 676

 Score = 27.8 bits (62), Expect = 1.0
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 10 IANSGLAVQSARMQIISENIANARTTG 36
          I  SGL      + +   NIAN  T G
Sbjct: 6  IGLSGLGASQTALAVTGNNIANVDTAG 32


>gnl|CDD|183642 PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.
          Length = 246

 Score = 27.1 bits (61), Expect = 1.5
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 1  MDYLIASAHIANSGLAVQSA-RMQIISENIANARTTG 36
          MD  +   + A SG A Q+  +  +++ N+ANA T G
Sbjct: 1  MDRAL---YTAMSG-ASQNLNQQAVVANNLANASTPG 33


>gnl|CDD|177423 PHA02596, 5, baseplate hub subunit and tail lysozyme; Provisional.
          Length = 576

 Score = 27.0 bits (60), Expect = 1.6
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)

Query: 37  DTPGSDPYRRK--TISFEEVMHGSGGVRVKKI 66
           DTPG + YRR   T ++EE+     G RV KI
Sbjct: 406 DTPGHERYRRVHPTGTYEEIR--PDGTRVVKI 435


>gnl|CDD|183641 PRK12637, flgE, flagellar hook protein FlgE; Provisional.
          Length = 473

 Score = 27.0 bits (59), Expect = 1.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 94  NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131
           NV++  E  +M    R Y AN QTIK   ++M   +++
Sbjct: 435 NVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMNM 472



 Score = 24.3 bits (52), Expect = 9.0
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 13 SGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSG-GVRVKKIGVDQ 70
          SGL   S  + +I  NIAN+ T G       ++    SF +V   S  G+ VK   ++Q
Sbjct: 8  SGLNAASQNLDVIGNNIANSGTVG-------FKSGAASFADVYASSRVGLGVKVSAINQ 59


>gnl|CDD|178035 PLN02414, PLN02414, glycine dehydrogenase (decarboxylating).
          Length = 993

 Score = 26.6 bits (59), Expect = 1.9
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 56  HGSGGVRVKKIGVDQSTFVEEFDPGHPVANASGIV 90
           HG GG  +  IGV +   +  F P HPV    GI 
Sbjct: 735 HGGGGPGMGPIGVKKH--LAPFLPSHPVVPTGGIP 767


>gnl|CDD|180346 PRK06004, flgB, flagellar basal body rod protein FlgB; Reviewed.
          Length = 127

 Score = 26.2 bits (58), Expect = 2.8
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 4/25 (16%)

Query: 19 SARMQIISENIANARTTGDTPGSDP 43
            R ++++EN+ANA    DTPG  P
Sbjct: 10 QERQKVLAENVANA----DTPGFRP 30


>gnl|CDD|183684 PRK12689, flgF, flagellar basal body rod protein FlgF; Reviewed.
          Length = 253

 Score = 25.9 bits (57), Expect = 3.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 88  GIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD 134
           G ++  NVN ++E   M E NR Y      ++Q  D+  T ++ L D
Sbjct: 204 GYIERSNVNPVLEMTRMMEVNRTYTQVSSMLQQQSDLRKTAIERLAD 250


>gnl|CDD|181252 PRK08147, flgK, flagellar hook-associated protein FlgK;
          Validated.
          Length = 547

 Score = 25.8 bits (57), Expect = 3.6
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 7/69 (10%)

Query: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVKKIGVD 69
           A SGL    A +  +S NI+N    G       Y R+T    +             GV 
Sbjct: 7  TAMSGLNAAQAALNTVSNNISNYNVAG-------YTRQTTILAQAGSTLTAGGWIGNGVY 59

Query: 70 QSTFVEEFD 78
           S    E+D
Sbjct: 60 VSGVQREYD 68


>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
          Length = 1167

 Score = 25.9 bits (57), Expect = 3.6
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 35  TGDTPGSDPYRRKTISFEEVMHGSGGVRVKKIGVDQSTFVEEFDPGHPVANA 86
           TG     DP  R      E + GSGGV + K G     FV E D    V+ A
Sbjct: 673 TGLIDPKDPSNRTKYLGPEALRGSGGVLLNKNG---ERFVNELDLRSVVSQA 721


>gnl|CDD|180769 PRK06945, flgK, flagellar hook-associated protein FlgK;
          Validated.
          Length = 651

 Score = 25.7 bits (57), Expect = 3.9
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 10 IANSGLAVQSARMQIISENIANARTTG 36
          I  SGL      +     NI+NA T G
Sbjct: 7  IGLSGLNAAQWGLTTTGHNISNAATPG 33


>gnl|CDD|128470 smart00173, RAS, Ras subfamily of RAS small GTPases.  Similar in
          fold and function to the bacterial EF-Tu GTPase. p21Ras
          couples receptor Tyr kinases and G protein receptors
          to protein kinase cascades.
          Length = 164

 Score = 25.6 bits (57), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 54 VMHGSGGVRVKKIGVD--QSTFVEEFDP 79
          V+ GSGGV    + +   Q  FV+++DP
Sbjct: 4  VVLGSGGVGKSALTIQFVQGHFVDDYDP 31


>gnl|CDD|177942 PLN02307, PLN02307, phosphoglucomutase.
          Length = 579

 Score = 25.0 bits (55), Expect = 6.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 13/50 (26%)

Query: 55  MHGSGGVRVKKI-----GVDQSTFV-----EEFDPGHPVAN---ASGIVK 91
           MHG  G   K+I     G  +S+ +     E+F  GHP  N   A  +VK
Sbjct: 232 MHGVTGAYAKRIFVEELGAPESSLLNCVPKEDFGGGHPDPNLTYAKELVK 281


>gnl|CDD|181572 PRK08871, flgK, flagellar hook-associated protein FlgK; Validated.
          Length = 626

 Score = 24.8 bits (54), Expect = 7.2
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 83  VANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131
           VA+ SG      VN+  E A+M +  + YMA+ + ++ ++D   T L L
Sbjct: 583 VASISG------VNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILQL 625


>gnl|CDD|150101 pfam09322, DUF1979, Domain of unknown function (DUF1979).
          Members of this family of functionally uncharacterized
          domains are found in various Oryza sativa mutator-like
          transposases.
          Length = 58

 Score = 24.8 bits (54), Expect = 7.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 53 EVMHGSGGVRVKKIGVDQSTFV 74
          +  HG G VR    GVD S F+
Sbjct: 8  QFYHGEGNVRYGPTGVDLSDFI 29


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.315    0.130    0.359 

Gapped
Lambda     K      H
   0.267   0.0765    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,112,660
Number of extensions: 121707
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 70
Length of query: 134
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,201,009
Effective search space: 214251459
Effective search space used: 214251459
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.7 bits)