RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter asiaticus str. psy62] (134 letters) >gnl|CDD|139220 PRK12782, flgC, flagellar basal body rod protein FlgC; Reviewed. Length = 138 Score = 184 bits (469), Expect = 7e-48 Identities = 76/135 (56%), Positives = 102/135 (75%), Gaps = 3/135 (2%) Query: 2 DYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH---GS 58 D L+AS+ IA+SGL QS R++++SEN+ANA++TG TPG+DPY RKT++F + G+ Sbjct: 3 DPLLASSRIASSGLEAQSTRLRVVSENLANAQSTGRTPGADPYARKTVTFRAELDRAAGA 62 Query: 59 GGVRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTI 118 VRVK+IGVD + F E+DPG+P A+ +G VK PNVN+L+E ADMRE NR Y ANLQ I Sbjct: 63 ASVRVKEIGVDTAPFRVEYDPGNPAADENGYVKLPNVNMLIEMADMREANRSYEANLQVI 122 Query: 119 KQSHDMMTTTLDLLR 133 KQ+ M+ T+DLLR Sbjct: 123 KQARAMVAMTIDLLR 137 >gnl|CDD|180197 PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed. Length = 135 Score = 164 bits (418), Expect = 6e-42 Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 4/133 (3%) Query: 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM---HGSGG 60 L +S +IA SGL+ QS R+ +IS NIANA +T G DPYRRK + F + G+GG Sbjct: 3 LFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDG-DPYRRKQVVFAAELDPGQGTGG 61 Query: 61 VRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQ 120 V+V KI DQS F +DPGHP A+A G VKYPNVNV+VE DM +R Y AN++ + Sbjct: 62 VKVAKIVEDQSPFKLVYDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNA 121 Query: 121 SHDMMTTTLDLLR 133 + MM TL + + Sbjct: 122 AKSMMQKTLTIGQ 134 >gnl|CDD|130462 TIGR01395, FlgC, flagellar basal-body rod protein FlgC. This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam model pfam00460. FlgC is part of the basal body. Length = 135 Score = 128 bits (324), Expect = 4e-31 Identities = 56/131 (42%), Positives = 74/131 (56%), Gaps = 8/131 (6%) Query: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH-------GSGGVR 62 ++ S L+ Q RM ++S N+ANA +T TP DPYRR+ FE + G GV+ Sbjct: 6 VSASALSAQRVRMNVVSSNLANADST-RTPAGDPYRRRRPVFEAELFQDRASRPGGSGVK 64 Query: 63 VKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSH 122 V KI D S F +DP HP A+A G VK PNVNV+ E DM E +R Y AN+Q + Sbjct: 65 VAKIVEDDSPFKLVYDPTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAK 124 Query: 123 DMMTTTLDLLR 133 M TL++ R Sbjct: 125 SMFLRTLEIGR 135 >gnl|CDD|183637 PRK12632, flgC, flagellar basal body rod protein FlgC; Provisional. Length = 130 Score = 110 bits (276), Expect = 1e-25 Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 10/136 (7%) Query: 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH---G 57 M S ++ SG+ Q+ R++ +SENIANA DTPG YRRKT+SF+E G Sbjct: 1 MTDFSKSLSVSASGMRAQALRLRHVSENIANA----DTPG---YRRKTVSFQEARDFDPG 53 Query: 58 SGGVRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQT 117 SG V + +D+S +DP HP+A+ +G NV+++VE AD RE R Y ANL+ Sbjct: 54 SGLVSTGPVRLDRSELPRIYDPSHPLADETGYYDGSNVDLVVEIADAREAQRSYEANLRM 113 Query: 118 IKQSHDMMTTTLDLLR 133 Q+ M ++ LDLLR Sbjct: 114 FDQARQMSSSLLDLLR 129 >gnl|CDD|183635 PRK12630, flgC, flagellar basal body rod protein FlgC; Provisional. Length = 143 Score = 94.9 bits (236), Expect = 6e-21 Identities = 51/137 (37%), Positives = 70/137 (51%), Gaps = 13/137 (9%) Query: 7 SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHG--------- 57 + I+ SGL+ + RM I+ NIANA TT G PY+RK F+E ++ Sbjct: 6 TMRISASGLSAERLRMDTIASNIANATTTRTADGG-PYKRKIAVFQENLNKELNKKNGAY 64 Query: 58 ---SGGVRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMAN 114 GV+ I D+S F + +DP HP A+ G V PNVNVL E ADM + R Y AN Sbjct: 65 EKKLYGVKAVGIVEDKSPFRKVYDPSHPDADEEGYVSMPNVNVLNEMADMMASTRSYEAN 124 Query: 115 LQTIKQSHDMMTTTLDL 131 + I M + L++ Sbjct: 125 VTAINAEKSMFSKALEI 141 >gnl|CDD|183636 PRK12631, flgC, flagellar basal body rod protein FlgC; Provisional. Length = 138 Score = 72.3 bits (177), Expect = 4e-14 Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 8/129 (6%) Query: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM-------HGSGGVR 62 +A SG++ QS R+ + NIANA + + YR + FE M S GV Sbjct: 9 VAGSGMSAQSVRLNTTASNIANADSVSSSVD-KTYRARHPIFEAEMAKAQSQQQASQGVA 67 Query: 63 VKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSH 122 VK I ++E+ P HP+A+A G + PNVNV+ E ADM +R Y N+Q + + Sbjct: 68 VKGIVESDKPLLKEYSPDHPMADADGFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAK 127 Query: 123 DMMTTTLDL 131 M+ TL + Sbjct: 128 SMLQQTLRM 136 >gnl|CDD|180702 PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed. Length = 141 Score = 60.2 bits (146), Expect = 1e-10 Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM--------HGSGGV 61 IA S + Q+ R+ ++ N+ANA + + + Y+ ++ F V G G Sbjct: 9 IAGSAMTAQTIRLNTVASNLANAESPAASA-ATAYKARSPVFAAVYSARTLADPRGVQGA 67 Query: 62 RVKKIGVDQST-FVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQ 120 +V+ + V Q V+ ++P +P+AN G V YP+VNV+ E ADM +R + N++ + Sbjct: 68 QVQVLDVVQVGGSVKRYEPNNPLANPQGYVFYPDVNVVEEMADMMSASRSFETNVEVLNS 127 Query: 121 SHDMMTTTLDL 131 M + L L Sbjct: 128 VKSMQQSLLKL 138 >gnl|CDD|183634 PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional. Length = 135 Score = 56.2 bits (135), Expect = 3e-09 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 9/130 (6%) Query: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTIS--FEEVMHGSG----GVRV 63 +A S L QS R+ I+ N+ANA + GS K I F+ V V Sbjct: 9 VAGSALHAQSVRLSTIASNLANADSVA---GSAEATYKPIEPIFQAQQSRQDPSLTSVNV 65 Query: 64 KKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHD 123 K+I + + ++PGHP+A+A G V P+V+ + + +M +R Y A ++ + + + Sbjct: 66 KEITTTNAPPIRRYEPGHPLADADGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKE 125 Query: 124 MMTTTLDLLR 133 + TL + R Sbjct: 126 LALATLTMGR 135 >gnl|CDD|79089 PRK12628, flgC, flagellar basal body rod protein FlgC; Provisional. Length = 140 Score = 47.5 bits (112), Expect = 1e-06 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 10/131 (7%) Query: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS---------GG 60 IA S + ++ R+ + N++NA +P + Y+ K F+ V + G Sbjct: 9 IAASAMTAETVRLTTSAGNMSNANVEAGSP-DEVYQAKYPVFKSVQENANQWMGEQIKAG 67 Query: 61 VRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQ 120 V++ I + +DP P+A+ G V N+N + E A++ +R Y N++ + Sbjct: 68 VKLDGIYESDAEPHRRYDPNSPIADKDGFVYTSNINYVEEMANIISASRSYQMNIELLNT 127 Query: 121 SHDMMTTTLDL 131 + +M TL L Sbjct: 128 TKQLMQRTLQL 138 >gnl|CDD|163298 TIGR03506, FlgEFG_subfam, fagellar hook-basal body proteins. This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR00488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain. Length = 231 Score = 46.1 bits (110), Expect = 3e-06 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 15/71 (21%) Query: 9 HIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS--------GG 60 + A SGL QS+ + +I+ NIAN TTG ++R F++++ S GG Sbjct: 4 YTALSGLNAQSSALDVIANNIANVNTTG-------FKRSRAEFQDLLSQSGSGSGQVGGG 56 Query: 61 VRVKKIGVDQS 71 VR + D S Sbjct: 57 VRASGVAQDFS 67 >gnl|CDD|180198 PRK05682, flgE, flagellar hook protein FlgE; Validated. Length = 407 Score = 44.1 bits (105), Expect = 1e-05 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%) Query: 9 HIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVKKIG 67 + A SGL S R+ +I NIANA TTG ++ F ++ S G ++G Sbjct: 4 NTAVSGLNAASNRLDVIGNNIANANTTG-------FKSSRAEFADLYANSAGTNPTQVG 55 Score = 30.2 bits (69), Expect = 0.16 Identities = 13/38 (34%), Positives = 21/38 (55%) Query: 94 NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131 NV++ E +M R Y AN +TIK ++ T ++L Sbjct: 369 NVDLSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVNL 406 >gnl|CDD|180196 PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed. Length = 137 Score = 43.7 bits (104), Expect = 2e-05 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 17/140 (12%) Query: 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGG 60 +D + L +++ R ++I+ NIANA DTPG Y+ + I FE V+ Sbjct: 2 LDSFDKALRFLQEALNLRAQRQEVIASNIANA----DTPG---YKARDIDFESVLAVMIF 54 Query: 61 VRVKKIGVDQSTFVEEFDPGHPVANASGIVKYP----------NVNVLVETADMRETNRL 110 R G++ + E P + + Y V++ VE + + + + Sbjct: 55 GRQSGSGLELARTSERHIPAQATTSPKAELLYRDPHQPSNDGNTVDMDVERTEFAKNSIM 114 Query: 111 YMANLQTIKQSHDMMTTTLD 130 Y A L + + + + Sbjct: 115 YQALLTALNGKFKGLMSVIQ 134 >gnl|CDD|183686 PRK12691, flgG, flagellar basal body rod protein FlgG; Reviewed. Length = 262 Score = 43.7 bits (104), Expect = 2e-05 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 7/47 (14%) Query: 9 HIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55 IA +G+A Q +++IS NIAN TTG ++R+ F++++ Sbjct: 5 SIAATGMAAQQLNVEVISNNIANMNTTG-------FKRQRAEFQDLL 44 Score = 30.3 bits (69), Expect = 0.17 Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 94 NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 NV+V+ E D+ R Y N + I + +M+ TT LR Sbjct: 223 NVDVVKEITDLITAQRAYEMNSKVITAADEMLQTTSQNLR 262 >gnl|CDD|131541 TIGR02488, flgG_G_neg, flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. Length = 259 Score = 42.0 bits (99), Expect = 5e-05 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 7/50 (14%) Query: 7 SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56 + A +G+ Q M +IS N+AN TTG +++ FE++++ Sbjct: 1 ALWTAATGMNAQQTNMDVISNNLANVNTTG-------FKKDRAEFEDLLY 43 Score = 33.1 bits (76), Expect = 0.021 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 78 DPGHPVANASGIVKY-----PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132 G P + G ++ NVNV+ E DM R Y N + I+ S M+ T LL Sbjct: 200 QIGTPGLDGFGKLRQGFLEASNVNVVQEMVDMITAQRAYEMNSKAIQASDQMLQTVSQLL 259 >gnl|CDD|162337 TIGR01396, FlgB, flagellar basal-body rod protein FlgB. This model represents FlgB, one of several components of bacterial flagella that share a domain described by pfam model pfam00460. FlgB is part of the basal body. Length = 131 Score = 38.1 bits (89), Expect = 7e-04 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 7/42 (16%) Query: 14 GLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55 L V+S R ++I+ NIAN DTPG Y+ K +SFE + Sbjct: 11 ALDVRSLRQEVIANNIANV----DTPG---YKAKDVSFEAEL 45 >gnl|CDD|181014 PRK07521, flgK, flagellar hook-associated protein FlgK; Validated. Length = 483 Score = 37.2 bits (87), Expect = 0.001 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 11/71 (15%) Query: 5 IASA-HIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRV 63 ++SA + A SGL S + ++S NIANA T G Y R+ S G G +V Sbjct: 3 LSSALNTAQSGLTATSRQTSVVSRNIANAGTPG-------YSRREASLVS---GPAGGQV 52 Query: 64 KKIGVDQSTFV 74 I Q + Sbjct: 53 VGISRAQDPAL 63 >gnl|CDD|183688 PRK12694, flgG, flagellar basal body rod protein FlgG; Reviewed. Length = 260 Score = 36.7 bits (85), Expect = 0.002 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%) Query: 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56 + S IA +GL Q A+M +IS N+AN T G ++R FE++++ Sbjct: 1 MNRSLWIAKTGLNAQQAQMDVISNNLANVSTNG-------FKRSRAVFEDLLY 46 Score = 30.9 bits (70), Expect = 0.12 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Query: 79 PGHPVANASGIVKY-----PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTT 127 P N +G + NVNV+ E +M +T R Y N + + S M+ Sbjct: 203 VSQPGLNGAGTLNQGYVEASNVNVVEELVNMIQTQRAYEINSKAVTTSDQMLQR 256 >gnl|CDD|148188 pfam06429, DUF1078, Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus. Length = 39 Score = 35.9 bits (84), Expect = 0.003 Identities = 13/39 (33%), Positives = 24/39 (61%) Query: 93 PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131 NV+++ E ++ E R Y AN + I+ + +M+ T L+L Sbjct: 1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL 39 >gnl|CDD|183687 PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional. Length = 261 Score = 35.6 bits (83), Expect = 0.005 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 7/52 (13%) Query: 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55 +I + IA +GL Q + +IS N+AN TTG +++ FE+++ Sbjct: 1 MIRALWIAKTGLDAQQTNIDVISNNLANVNTTG-------FKKSRAVFEDLL 45 Score = 29.8 bits (68), Expect = 0.23 Identities = 13/39 (33%), Positives = 18/39 (46%) Query: 94 NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132 NVNV+ E +M R Y N + I + M+ LL Sbjct: 223 NVNVVEELVNMITGQRAYEMNSKAISTADQMLQYVNQLL 261 >gnl|CDD|183768 PRK12818, flgG, flagellar basal body rod protein FlgG; Reviewed. Length = 256 Score = 34.7 bits (80), Expect = 0.008 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 10/55 (18%) Query: 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTI---SFEEVM 55 +I + A SG+ A+ +I+ N+AN T G Y+ + SFE+V+ Sbjct: 1 MIRGLYTAVSGMITLEAKQDVITNNLANVNTVG-------YKSDNLAFKSFEDVL 48 >gnl|CDD|183767 PRK12817, flgG, flagellar basal body rod protein FlgG; Reviewed. Length = 260 Score = 34.3 bits (79), Expect = 0.011 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 7/45 (15%) Query: 11 ANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55 + SG+ Q ++ IS N+AN TTG Y+R+ +SF +++ Sbjct: 8 SKSGMNAQQEKLDSISNNLANVNTTG-------YKREDVSFSDLV 45 >gnl|CDD|183630 PRK12623, flgB, flagellar basal body rod protein FlgB; Provisional. Length = 131 Score = 32.5 bits (74), Expect = 0.033 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 7/40 (17%) Query: 14 GLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEE 53 GL S R ++IS NIAN T G Y+R ++FEE Sbjct: 19 GLDASSYRGKVISNNIANVNTKG-------YKRHYVTFEE 51 >gnl|CDD|162886 TIGR02492, flgK_ends, flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. Length = 322 Score = 31.9 bits (73), Expect = 0.049 Identities = 13/27 (48%), Positives = 16/27 (59%) Query: 10 IANSGLAVQSARMQIISENIANARTTG 36 IA SGL+ + + S NIANA T G Sbjct: 5 IAKSGLSASQIALSVTSNNIANANTPG 31 >gnl|CDD|183631 PRK12625, flgB, flagellar basal body rod protein FlgB; Provisional. Length = 132 Score = 31.7 bits (72), Expect = 0.064 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 7/41 (17%) Query: 15 LAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55 L +++ R ++IS NIANA DTP Y+ + + F M Sbjct: 16 LGIRAQRAEVISSNIANA----DTPH---YKARDVDFSAAM 49 >gnl|CDD|180703 PRK06803, flgE, flagellar hook protein FlgE; Validated. Length = 402 Score = 31.3 bits (71), Expect = 0.075 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 9/62 (14%) Query: 7 SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS--GGVRVK 64 S +IA SGL + ++ IS NIAN+ T G ++ F + +G GGV V Sbjct: 2 SFNIALSGLNATTQQLNTISNNIANSSTKG-------FKGSRTEFSSIYNGGQPGGVEVS 54 Query: 65 KI 66 + Sbjct: 55 SV 56 >gnl|CDD|183632 PRK12626, flgB, flagellar basal body rod protein FlgB; Provisional. Length = 162 Score = 31.1 bits (70), Expect = 0.092 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%) Query: 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS 58 +D L A L V++ R +++S NIANA DTPG YR + + F + + Sbjct: 2 LDKLDAEFAFGRQALDVRAYRQELLSSNIANA----DTPG---YRARDVDFASTLARA 52 >gnl|CDD|183643 PRK12642, flgF, flagellar basal body rod protein FlgF; Reviewed. Length = 241 Score = 30.8 bits (70), Expect = 0.12 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 10/54 (18%) Query: 14 GLAVQSA---RMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVK 64 L+ Q A R+ I++N+AN T G +R + F+ V+ + +V Sbjct: 8 ALSSQMALEKRLDTIADNVANVNTVG-------FRATEVKFDTVVSDTASKKVA 54 >gnl|CDD|183685 PRK12690, flgF, flagellar basal body rod protein FlgF; Reviewed. Length = 238 Score = 30.8 bits (70), Expect = 0.12 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 10/49 (20%) Query: 15 LAVQSA---RMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGG 60 L QS MQ+++ NIANA TTG +RR+ + F E + Sbjct: 9 LTRQSGLMREMQVVANNIANASTTG-------FRREGLVFSEYVKSLDS 50 Score = 27.7 bits (62), Expect = 1.0 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%) Query: 82 PVANAS---GIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD 134 P A G ++ NVN + E A M E R Y + + + + TT+ L Sbjct: 183 PAEGARLLQGFLEGSNVNPVSEIARMIEVQRAYELGQSFLDREDERIRTTIRTLGQ 238 >gnl|CDD|181099 PRK07739, flgK, flagellar hook-associated protein FlgK; Validated. Length = 507 Score = 30.4 bits (69), Expect = 0.15 Identities = 13/29 (44%), Positives = 15/29 (51%) Query: 10 IANSGLAVQSARMQIISENIANARTTGDT 38 A GL Q A + + NIANA T G T Sbjct: 10 TARRGLFAQQAALYVTGHNIANANTPGYT 38 >gnl|CDD|171613 PRK12621, flgB, flagellar basal body rod protein FlgB; Provisional. Length = 136 Score = 30.1 bits (68), Expect = 0.19 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%) Query: 18 QSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGV--RVKKIGVDQSTFVE 75 Q R ++ N+AN T G Y+ + + FE+ + + G+ + K +++ Sbjct: 19 QLQRQNVVMSNLANVNTPG-------YKPRELEFEKELQAALGLDAKGKMTRTEKNHLPA 71 Query: 76 EFDPGHPVANASGIVK------YPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 FDP S K V++ E A M + Y A IK++ + + T + Sbjct: 72 VFDPEGFEPEWSKAFKPRVVHGEDRVDLDKEMAKMAKNTLQYNALATVIKKNFEGLKTII 131 >gnl|CDD|183629 PRK12622, flgB, flagellar basal body rod protein FlgB; Provisional. Length = 135 Score = 29.1 bits (65), Expect = 0.37 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%) Query: 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFE 52 M+ S +++ L V S R +I++NIAN DTP ++R ++FE Sbjct: 1 MNIFERSVDLSHRYLDVLSLRQSVIADNIANV----DTPN---FKRSKVTFE 45 >gnl|CDD|180205 PRK05691, PRK05691, peptide synthase; Validated. Length = 4334 Score = 29.0 bits (65), Expect = 0.43 Identities = 13/38 (34%), Positives = 17/38 (44%) Query: 78 DPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANL 115 DPG P I++ VLV +A RE R + L Sbjct: 3801 DPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDEL 3838 >gnl|CDD|183766 PRK12816, flgG, flagellar basal body rod protein FlgG; Reviewed. Length = 264 Score = 29.0 bits (65), Expect = 0.43 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Query: 79 PGHPVANA-----SGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 PG P + G ++ NV+++ E M R Y N + I+ S +M+ T +L R Sbjct: 205 PGIPGSEGFGRVLQGFLEMSNVSIVEEMVTMIVAQRAYEINSKAIQTSDNMLGTANNLKR 264 Score = 25.2 bits (55), Expect = 5.9 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 7/46 (15%) Query: 11 ANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56 A SG+ Q + I+ N+AN TTG +++ FE++++ Sbjct: 8 AASGMNAQQFNIDTIANNLANVNTTG-------FKKIRAEFEDLIY 46 >gnl|CDD|180697 PRK06797, flgB, flagellar basal body rod protein FlgB; Reviewed. Length = 135 Score = 28.8 bits (64), Expect = 0.50 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 22/118 (18%) Query: 8 AHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVK--- 64 + + + + + R +S NIANA T G Y+ + ++F E M+ S + Sbjct: 6 SDVGHYMNYLVTKR-NTVSSNIANANTPG-------YKAQDVTFAEQMNKSSALYKSNAA 57 Query: 65 --KIGVDQSTFVEEFDPGHPVANASGIVKYP---------NVNVLVETADMRETNRLY 111 K D E P N ++ +V+V E D+ + N+LY Sbjct: 58 DLKSNPDLYQTNEMHLPTVNTKNTYAKIQTKSMQTNKDGNSVDVTTEMLDLMKANQLY 115 >gnl|CDD|139158 PRK12692, flgG, flagellar basal body rod protein FlgG; Reviewed. Length = 262 Score = 28.7 bits (64), Expect = 0.57 Identities = 12/27 (44%), Positives = 19/27 (70%) Query: 10 IANSGLAVQSARMQIISENIANARTTG 36 IA +G++ Q +++I+ NIAN TTG Sbjct: 6 IAATGMSAQQLNLEVIANNIANLNTTG 32 >gnl|CDD|168340 PRK06003, flgB, flagellar basal body rod protein FlgB; Reviewed. Length = 126 Score = 28.4 bits (64), Expect = 0.59 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 8/42 (19%) Query: 19 SARMQIISENIANARTTGDTPGSDPYRRKTIS-FEEVMHGSG 59 S R ++ NIANA +TPG YR + + F +V+ +G Sbjct: 18 SVRQATVAGNIANA----NTPG---YRARDVQPFADVLDKTG 52 >gnl|CDD|183633 PRK12627, flgB, flagellar basal body rod protein FlgB; Provisional. Length = 128 Score = 28.2 bits (63), Expect = 0.63 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 11/54 (20%) Query: 13 SGLAVQSA-RMQIISENIANARTTGDTPGSDPYR-RKTISFEEVM--HGSGGVR 62 S +A + R +++ N+ANA DTPG YR R F E G+ G+R Sbjct: 12 SAMARHAGERQAVVARNVANA----DTPG---YRARDLADFAESYRAEGTTGMR 58 >gnl|CDD|168176 PRK05683, flgK, flagellar hook-associated protein FlgK; Validated. Length = 676 Score = 27.8 bits (62), Expect = 1.0 Identities = 10/27 (37%), Positives = 12/27 (44%) Query: 10 IANSGLAVQSARMQIISENIANARTTG 36 I SGL + + NIAN T G Sbjct: 6 IGLSGLGASQTALAVTGNNIANVDTAG 32 >gnl|CDD|183642 PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed. Length = 246 Score = 27.1 bits (61), Expect = 1.5 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%) Query: 1 MDYLIASAHIANSGLAVQSA-RMQIISENIANARTTG 36 MD + + A SG A Q+ + +++ N+ANA T G Sbjct: 1 MDRAL---YTAMSG-ASQNLNQQAVVANNLANASTPG 33 >gnl|CDD|177423 PHA02596, 5, baseplate hub subunit and tail lysozyme; Provisional. Length = 576 Score = 27.0 bits (60), Expect = 1.6 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%) Query: 37 DTPGSDPYRRK--TISFEEVMHGSGGVRVKKI 66 DTPG + YRR T ++EE+ G RV KI Sbjct: 406 DTPGHERYRRVHPTGTYEEIR--PDGTRVVKI 435 >gnl|CDD|183641 PRK12637, flgE, flagellar hook protein FlgE; Provisional. Length = 473 Score = 27.0 bits (59), Expect = 1.6 Identities = 13/38 (34%), Positives = 21/38 (55%) Query: 94 NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131 NV++ E +M R Y AN QTIK ++M +++ Sbjct: 435 NVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMNM 472 Score = 24.3 bits (52), Expect = 9.0 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Query: 13 SGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSG-GVRVKKIGVDQ 70 SGL S + +I NIAN+ T G ++ SF +V S G+ VK ++Q Sbjct: 8 SGLNAASQNLDVIGNNIANSGTVG-------FKSGAASFADVYASSRVGLGVKVSAINQ 59 >gnl|CDD|178035 PLN02414, PLN02414, glycine dehydrogenase (decarboxylating). Length = 993 Score = 26.6 bits (59), Expect = 1.9 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%) Query: 56 HGSGGVRVKKIGVDQSTFVEEFDPGHPVANASGIV 90 HG GG + IGV + + F P HPV GI Sbjct: 735 HGGGGPGMGPIGVKKH--LAPFLPSHPVVPTGGIP 767 >gnl|CDD|180346 PRK06004, flgB, flagellar basal body rod protein FlgB; Reviewed. Length = 127 Score = 26.2 bits (58), Expect = 2.8 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 4/25 (16%) Query: 19 SARMQIISENIANARTTGDTPGSDP 43 R ++++EN+ANA DTPG P Sbjct: 10 QERQKVLAENVANA----DTPGFRP 30 >gnl|CDD|183684 PRK12689, flgF, flagellar basal body rod protein FlgF; Reviewed. Length = 253 Score = 25.9 bits (57), Expect = 3.5 Identities = 15/47 (31%), Positives = 24/47 (51%) Query: 88 GIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD 134 G ++ NVN ++E M E NR Y ++Q D+ T ++ L D Sbjct: 204 GYIERSNVNPVLEMTRMMEVNRTYTQVSSMLQQQSDLRKTAIERLAD 250 >gnl|CDD|181252 PRK08147, flgK, flagellar hook-associated protein FlgK; Validated. Length = 547 Score = 25.8 bits (57), Expect = 3.6 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 7/69 (10%) Query: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVKKIGVD 69 A SGL A + +S NI+N G Y R+T + GV Sbjct: 7 TAMSGLNAAQAALNTVSNNISNYNVAG-------YTRQTTILAQAGSTLTAGGWIGNGVY 59 Query: 70 QSTFVEEFD 78 S E+D Sbjct: 60 VSGVQREYD 68 >gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional. Length = 1167 Score = 25.9 bits (57), Expect = 3.6 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Query: 35 TGDTPGSDPYRRKTISFEEVMHGSGGVRVKKIGVDQSTFVEEFDPGHPVANA 86 TG DP R E + GSGGV + K G FV E D V+ A Sbjct: 673 TGLIDPKDPSNRTKYLGPEALRGSGGVLLNKNG---ERFVNELDLRSVVSQA 721 >gnl|CDD|180769 PRK06945, flgK, flagellar hook-associated protein FlgK; Validated. Length = 651 Score = 25.7 bits (57), Expect = 3.9 Identities = 10/27 (37%), Positives = 12/27 (44%) Query: 10 IANSGLAVQSARMQIISENIANARTTG 36 I SGL + NI+NA T G Sbjct: 7 IGLSGLNAAQWGLTTTGHNISNAATPG 33 >gnl|CDD|128470 smart00173, RAS, Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 Score = 25.6 bits (57), Expect = 4.6 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Query: 54 VMHGSGGVRVKKIGVD--QSTFVEEFDP 79 V+ GSGGV + + Q FV+++DP Sbjct: 4 VVLGSGGVGKSALTIQFVQGHFVDDYDP 31 >gnl|CDD|177942 PLN02307, PLN02307, phosphoglucomutase. Length = 579 Score = 25.0 bits (55), Expect = 6.6 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 13/50 (26%) Query: 55 MHGSGGVRVKKI-----GVDQSTFV-----EEFDPGHPVAN---ASGIVK 91 MHG G K+I G +S+ + E+F GHP N A +VK Sbjct: 232 MHGVTGAYAKRIFVEELGAPESSLLNCVPKEDFGGGHPDPNLTYAKELVK 281 >gnl|CDD|181572 PRK08871, flgK, flagellar hook-associated protein FlgK; Validated. Length = 626 Score = 24.8 bits (54), Expect = 7.2 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%) Query: 83 VANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131 VA+ SG VN+ E A+M + + YMA+ + ++ ++D T L L Sbjct: 583 VASISG------VNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILQL 625 >gnl|CDD|150101 pfam09322, DUF1979, Domain of unknown function (DUF1979). Members of this family of functionally uncharacterized domains are found in various Oryza sativa mutator-like transposases. Length = 58 Score = 24.8 bits (54), Expect = 7.9 Identities = 10/22 (45%), Positives = 12/22 (54%) Query: 53 EVMHGSGGVRVKKIGVDQSTFV 74 + HG G VR GVD S F+ Sbjct: 8 QFYHGEGNVRYGPTGVDLSDFI 29 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.315 0.130 0.359 Gapped Lambda K H 0.267 0.0765 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,112,660 Number of extensions: 121707 Number of successful extensions: 314 Number of sequences better than 10.0: 1 Number of HSP's gapped: 301 Number of HSP's successfully gapped: 70 Length of query: 134 Length of database: 5,994,473 Length adjustment: 83 Effective length of query: 51 Effective length of database: 4,201,009 Effective search space: 214251459 Effective search space used: 214251459 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (23.7 bits)