HHsearch alignment for GI: 254780381 and conserved domain: COG1256

>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion].

Probab=98.22  E-value=1.1e-06  Score=54.76  Aligned_cols=42  Identities=24%  Similarity=0.351  Sum_probs=39.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             960148999999999999999999963100137776533221
Q gi|254780381|r    1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDIS   42 (130)
Q Consensus         1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~   42 (130)
T Consensus         1 ms~~s~lnta~sgl~a~q~~l~vtg~NIsNant~gYsRQrv~   42 (552)
T COG1256           1 MSLFSLLNTALSGLNAAQAALDVTGHNISNANTPGYSRQRVI   42 (552)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHH
T ss_conf             952677999999999999999875613356899986302104