HHsearch alignment for GI: 254780381 and conserved domain: COG1256
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion].
Probab=97.17 E-value=0.00088 Score=39.33 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47652008999999999999999999999999999999636
Q gi|254780381|r 89 VSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 89 ~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
T Consensus 509 ~S~SGVnlDEE~anLi~~Qq~Y~AsAKvI~tvd~m~dtLln 549 (552)
T COG1256 509 QSISGVNLDEEMANLIQFQQAYQASAKVIQTVDEMLDTLLN 549 (552)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 60137787799999999999999999999999999999986