HHsearch alignment for GI: 254780381 and conserved domain: COG1256

>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion].
Probab=97.17  E-value=0.00088  Score=39.33  Aligned_cols=41  Identities=17%  Similarity=0.278  Sum_probs=36.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             47652008999999999999999999999999999999636
Q gi|254780381|r   89 VSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR  129 (130)
Q Consensus        89 ~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~  129 (130)
T Consensus       509 ~S~SGVnlDEE~anLi~~Qq~Y~AsAKvI~tvd~m~dtLln  549 (552)
T COG1256         509 QSISGVNLDEEMANLIQFQQAYQASAKVIQTVDEMLDTLLN  549 (552)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             60137787799999999999999999999999999999986