HHsearch alignment for GI: 254780381 and conserved domain: COG1749
>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion].
Probab=98.57 E-value=3.2e-08 Score=62.97 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 489999999999999999999631001377765332210567665443211
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMA 55 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~~~ 55 (130)
T Consensus 3 ~s~~~gvSGm~a~q~~LdvisnNIANanT~GfK~s~~-~F~dm~s~s~~g~ 52 (423)
T COG1749 3 RSFYNGVSGMNAHQFALDVISNNIANANTTGFKRSRA-EFSDMFSQSLVGA 52 (423)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHCCCC
T ss_conf 6776666667776640332023413454521132675-0663201000455