HHsearch alignment for GI: 254780381 and conserved domain: PRK06003
>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed.
Probab=100.00 E-value=1.8e-39 Score=229.50 Aligned_cols=125 Identities=42% Similarity=0.655 Sum_probs=109.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96014899999999999999999996310013777653322105676654-43211346651134566655555576777
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQ-NFLMARTHETHLKESDSSGLHWNAHVIEA 79 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (130)
T Consensus 1 m~~l~lf~la~~~~~~~~~Rq~viA~NIANadTPgYkarDv~~Fe~~l~~~~~~l~~T~~~Hi~~~~~~~~-----~~~~ 75 (126)
T PRK06003 1 MSPIYLFDLASRQAQWLSVRQATVAGNIANANTPGYRARDVEPFADVLDKTGLTMAATSPGHLGAEATGID-----VTEA 75 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCC-----CCCC
T ss_conf 97115999999998999999999997220279999861225379999861466401078765077667787-----4223
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 765887764476520089999999999999999999999999999996369
Q gi|254780381|r 80 PLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 80 ~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
T Consensus 76 ~~~~~~~~~~dGN~V~le~Em~~~aen~~~Y~~~~~l~~~~~~ml~~Ai~G 126 (126)
T PRK06003 76 RPDDSWEVTHSGNSVSLEQEMMKAGEINRDYSLNTAIVKSFHRMMLMTVKG 126 (126)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 326777637999945799999999999999999999999999999998649