HHsearch alignment for GI: 254780381 and conserved domain: PRK06003

>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed.
Probab=100.00  E-value=1.8e-39  Score=229.50  Aligned_cols=125  Identities=42%  Similarity=0.655  Sum_probs=109.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             96014899999999999999999996310013777653322105676654-43211346651134566655555576777
Q gi|254780381|r    1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQ-NFLMARTHETHLKESDSSGLHWNAHVIEA   79 (130)
Q Consensus         1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (130)
T Consensus         1 m~~l~lf~la~~~~~~~~~Rq~viA~NIANadTPgYkarDv~~Fe~~l~~~~~~l~~T~~~Hi~~~~~~~~-----~~~~   75 (126)
T PRK06003          1 MSPIYLFDLASRQAQWLSVRQATVAGNIANANTPGYRARDVEPFADVLDKTGLTMAATSPGHLGAEATGID-----VTEA   75 (126)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCC-----CCCC
T ss_conf             97115999999998999999999997220279999861225379999861466401078765077667787-----4223


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             765887764476520089999999999999999999999999999996369
Q gi|254780381|r   80 PLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG  130 (130)
Q Consensus        80 ~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G  130 (130)
T Consensus        76 ~~~~~~~~~~dGN~V~le~Em~~~aen~~~Y~~~~~l~~~~~~ml~~Ai~G  126 (126)
T PRK06003         76 RPDDSWEVTHSGNSVSLEQEMMKAGEINRDYSLNTAIVKSFHRMMLMTVKG  126 (126)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             326777637999945799999999999999999999999999999998649