HHsearch alignment for GI: 254780381 and conserved domain: PRK06797
>PRK06797 flgB flagellar basal body rod protein FlgB; Reviewed.
Probab=100.00 E-value=1.7e-34 Score=202.90 Aligned_cols=118 Identities=25% Similarity=0.399 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--------------HHCCCCCCCCCCCCCCCC
Q ss_conf 489999999999999999999631001377765332210567665443--------------211346651134566655
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF--------------LMARTHETHLKESDSSGL 70 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~--------------~~~~~~~~~~~~~~~~~~ 70 (130)
T Consensus 3 ~~~~~~g~~Ld~r~~Rq~viAsNIANadTPgYKarDv-~Fe~~L~~a~~~~~~~~~~~~~~~~l~~T~~~Hl~~~~~~~~ 81 (135)
T PRK06797 3 DLVSDVGHYMNYLVTKRNTVSSNIANANTPGYKAQDV-TFAEQMNKSSALYKSNAADLKSNPDLYQTNEMHLPTVNTKNT 81 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCC
T ss_conf 2899999998899999999986102478999864338-799999998876530111235677635477655688778887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 555576777765887764476520089999999999999999999999999999996369
Q gi|254780381|r 71 HWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
T Consensus 82 ~~~------~~~~~~~~~~DGNtVD~d~Em~~~a~N~l~Yqas~~~Ln~k~s-l~~AirG 134 (135)
T PRK06797 82 YAK------IQTKSMQTNKDGNSVDVTTEMLDLMKANQLYGISINAINTQYA-INQAARG 134 (135)
T ss_pred CCE------EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHCC
T ss_conf 743------6558998489997557899999999999999999999825541-8888647