HHsearch alignment for GI: 254780381 and conserved domain: PRK12619
>PRK12619 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=100.00 E-value=2e-33 Score=197.20 Aligned_cols=120 Identities=20% Similarity=0.352 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH-----HCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 014899999999999999999996310013777653322105676654432-----113466511345666555555767
Q gi|254780381|r 3 PITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFL-----MARTHETHLKESDSSGLHWNAHVI 77 (130)
Q Consensus 3 ~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 77 (130)
T Consensus 5 ~d~~~gi~~~aL~~r~~Rq~via~NIANadTPgYKakdv-~Fe~~L~~a~~~~~~~l~~t~~~Hi~~~~~-------~~~ 76 (130)
T PRK12619 5 LDSYFGIHAKALIARDQRASVLANNIANVNTPNFKARDV-DFNEVLTATMAGNSQQLRVTSDQHINTNAD-------FMT 76 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-------CCC
T ss_conf 887866779999999999999986232168999864448-899999998736876654478020478777-------666
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 77765887764476520089999999999999999999999999999996369
Q gi|254780381|r 78 EAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 78 ~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
T Consensus 77 ~~~~r~~~~~~~DGNtVDid~Ema~~a~N~l~Yqa~~~~l~~k~~~l~~aIkG 129 (130)
T PRK12619 77 HLKYRMTHHASLDGNTVDKDMETTEFARNALNYQASLSFLNGKIKSMLTALKG 129 (130)
T ss_pred CCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 51012688768999742579999999999999999999999999999998658