HHsearch alignment for GI: 254780381 and conserved domain: PRK12620
>PRK12620 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=100.00 E-value=7.7e-34 Score=199.46 Aligned_cols=119 Identities=22% Similarity=0.332 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH------HHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 489999999999999999999631001377765332210567665443------21134665113456665555557677
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF------LMARTHETHLKESDSSGLHWNAHVIE 78 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (130)
T Consensus 7 ~~~~~~~~aL~lr~~Rq~viasNIANadTPgYKardv-~Fe~~L~~a~~~~~~~~l~~T~~~H~~~~~~~~~-~~----- 79 (132)
T PRK12620 7 SFLGVHGDALTLREQRMKLIASNLSNVDTPGYKAKDL-NFEAALKSAQGEQDGGLMQTTDAKHYEVGGGGLN-PF----- 79 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CC-----
T ss_conf 7862889999999999999986022168999876658-7899999986646677554467330167778889-74-----
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7765887764476520089999999999999999999999999999996369
Q gi|254780381|r 79 APLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 79 ~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
T Consensus 80 ~~~~~~~~~~~DGNtVd~d~Em~~~aeN~l~Y~a~~~~l~~ki~~l~~AI~G 131 (132)
T PRK12620 80 QITREADQPSLDGNTVDPDAERAAYGRAALEYRASLSFLESKVRSMLTAITG 131 (132)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 1235788867899850669999999999999999999999999999998648