HHsearch alignment for GI: 254780381 and conserved domain: PRK12622

>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=100.00  E-value=1e-33  Score=198.83  Aligned_cols=122  Identities=25%  Similarity=0.348  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--------HHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             489999999999999999999631001377765332210567665443--------211346651134566655555576
Q gi|254780381|r    5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF--------LMARTHETHLKESDSSGLHWNAHV   76 (130)
Q Consensus         5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~   76 (130)
T Consensus         6 ~ti~ll~kaLd~~~~Rq~via~NIANadTPgYK~~dv-~Fe~~L~~Al~~~~~~~l~l~~t~~~Hi~~~~~~~~~~--~~   82 (135)
T PRK12622          6 RSVDLSHRYLDVLSLRQSVIADNIANVDTPNFKRSKV-TFESELERAILNEDKNDLSLIRGNDKHLSGFKELGYLD--VK   82 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC--CC
T ss_conf             8999999998899999999985010278999752407-69999999985377777765558865667777777555--65


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             77776588776447652008999999999999999999999999999999636
Q gi|254780381|r   77 IEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR  129 (130)
Q Consensus        77 ~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~  129 (130)
T Consensus        83 p~~~~~~~~~~~~DGNnVDid~Em~~la~N~l~Y~al~~~l~~~f~~l~~vIk  135 (135)
T PRK12622         83 PHRMLDHLSTLNNNGNNVDIDSEMKALVQNQMMYHLFTNIQAHHFKSVNIVIK  135 (135)
T ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             04640788766799987588999999999999999999999989999999859