HHsearch alignment for GI: 254780381 and conserved domain: PRK12622
>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=100.00 E-value=1e-33 Score=198.83 Aligned_cols=122 Identities=25% Similarity=0.348 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--------HHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 489999999999999999999631001377765332210567665443--------211346651134566655555576
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF--------LMARTHETHLKESDSSGLHWNAHV 76 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 76 (130)
T Consensus 6 ~ti~ll~kaLd~~~~Rq~via~NIANadTPgYK~~dv-~Fe~~L~~Al~~~~~~~l~l~~t~~~Hi~~~~~~~~~~--~~ 82 (135)
T PRK12622 6 RSVDLSHRYLDVLSLRQSVIADNIANVDTPNFKRSKV-TFESELERAILNEDKNDLSLIRGNDKHLSGFKELGYLD--VK 82 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC--CC
T ss_conf 8999999998899999999985010278999752407-69999999985377777765558865667777777555--65
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 77776588776447652008999999999999999999999999999999636
Q gi|254780381|r 77 IEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 77 ~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
T Consensus 83 p~~~~~~~~~~~~DGNnVDid~Em~~la~N~l~Y~al~~~l~~~f~~l~~vIk 135 (135)
T PRK12622 83 PHRMLDHLSTLNNNGNNVDIDSEMKALVQNQMMYHLFTNIQAHHFKSVNIVIK 135 (135)
T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 04640788766799987588999999999999999999999989999999859