HHsearch alignment for GI: 254780381 and conserved domain: PRK12623

>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=100.00  E-value=7e-34  Score=199.68  Aligned_cols=118  Identities=24%  Similarity=0.388  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH---HHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             489999999999999999999631001377765332210567665443---21134665113456665555557677776
Q gi|254780381|r    5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF---LMARTHETHLKESDSSGLHWNAHVIEAPL   81 (130)
Q Consensus         5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T Consensus        11 ~tf~ll~~aLd~~~~Rq~vIa~NIANadTPgYKa~dv-~Fe~~L~~a~~~~~l~~T~~~Hi~~~~~~~------~~~~~~   83 (131)
T PRK12623         11 LTYDLLKKGLDASSYRGKVISNNIANVNTKDYKRHYV-TFEETLKDNLDNLELKTTNEKHINDGVEFG------QIKEKR   83 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCC------CCEEEE
T ss_conf             5899999999999999999986032168999876558-699999874425876557712037877878------731685


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             588776447652008999999999999999999999999999999636
Q gi|254780381|r   82 DQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR  129 (130)
Q Consensus        82 ~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~  129 (130)
T Consensus        84 ~~~~~~r~DGNnVDid~Em~~laeN~l~Y~a~~~~l~~k~~~lk~aI~  131 (131)
T PRK12623         84 DESTSMRTDGNNVDIDNEMVNQAANTLMYNALITQLNNRLATTRYIIN  131 (131)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             689986899986779999999999999999999999989999998629