HHsearch alignment for GI: 254780381 and conserved domain: PRK12623
>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=100.00 E-value=7e-34 Score=199.68 Aligned_cols=118 Identities=24% Similarity=0.388 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH---HHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 489999999999999999999631001377765332210567665443---21134665113456665555557677776
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF---LMARTHETHLKESDSSGLHWNAHVIEAPL 81 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (130)
T Consensus 11 ~tf~ll~~aLd~~~~Rq~vIa~NIANadTPgYKa~dv-~Fe~~L~~a~~~~~l~~T~~~Hi~~~~~~~------~~~~~~ 83 (131)
T PRK12623 11 LTYDLLKKGLDASSYRGKVISNNIANVNTKDYKRHYV-TFEETLKDNLDNLELKTTNEKHINDGVEFG------QIKEKR 83 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCC------CCEEEE
T ss_conf 5899999999999999999986032168999876558-699999874425876557712037877878------731685
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 588776447652008999999999999999999999999999999636
Q gi|254780381|r 82 DQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 82 ~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
T Consensus 84 ~~~~~~r~DGNnVDid~Em~~laeN~l~Y~a~~~~l~~k~~~lk~aI~ 131 (131)
T PRK12623 84 DESTSMRTDGNNVDIDNEMVNQAANTLMYNALITQLNNRLATTRYIIN 131 (131)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 689986899986779999999999999999999999989999998629