HHsearch alignment for GI: 254780381 and conserved domain: PRK12628

>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=99.96  E-value=2.8e-28  Score=169.79  Aligned_cols=128  Identities=15%  Similarity=0.126  Sum_probs=108.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCCC
Q ss_conf             96014899999999999999999996310013777------653322105676654432113---466511345666555
Q gi|254780381|r    1 MQPITFFQIASQHANWLSERQKIVSENIANASTPN------YRAKDISSFETILNQNFLMAR---THETHLKESDSSGLH   71 (130)
Q Consensus         1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPg------Yk~~dv~~F~~~l~~~~~~~~---~~~~~~~~~~~~~~~   71 (130)
T Consensus         1 M~l~~~~~Ia~sgm~Aqr~Rl~viasNiANa~t~~~~~~~~Y~~k~~v-f~~~~~~~~~~~~~~~~~gV~v~~I~~~~~~   79 (140)
T PRK12628          1 MSLNAIFDIAASAMTAETVRLTTSAGNMSNANVEAGSPDEVYQAKYPV-FKSVQENANQWMGEQIKAGVKLDGIYESDAE   79 (140)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCH-HHHHHHHHHHHCCCCCCCCEEEEEEECCCCC
T ss_conf             960778889999999999999999998863688888999733531301-3446665543115556787489866637998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5557677776588776447652008999999999999999999999999999999636
Q gi|254780381|r   72 WNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR  129 (130)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~  129 (130)
T Consensus        80 ~~~~YdP~hP~Ad~~GyV~~pnVn~~~EMvdm~~AsRsYEANv~v~~~aK~M~~~aL~  137 (140)
T PRK12628         80 PHRRYDPNSPIADKDGFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQ  137 (140)
T ss_pred             CCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2203699999988898673489888999999999999999999999999999999986