HHsearch alignment for GI: 254780381 and conserved domain: PRK12630
>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=99.95 E-value=5.3e-28 Score=168.35 Aligned_cols=128 Identities=20% Similarity=0.134 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHHHHHCC------CCCCCCCCCCCC
Q ss_conf 9601489999999999999999999631001377------7653322105676654432113------466511345666
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTP------NYRAKDISSFETILNQNFLMAR------THETHLKESDSS 68 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTP------gYk~~dv~~F~~~l~~~~~~~~------~~~~~~~~~~~~ 68 (130)
T Consensus 1 M~~~~~~~Ia~sgl~Aqr~Rl~~ia~NiANa~tt~~~~g~pYrrk~~v-f~~~~~~~~~~~~~~~~~~~~gV~v~~i~~d 79 (143)
T PRK12630 1 MKAFDSMRISASGLSAERLRMDTIASNISNASTTRTANGGPYRRKIAV-FQENLNNELNKKNGAYEKKLYGVKAVGIVED 79 (143)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCEEEEEEECC
T ss_conf 972557869999999999999999987653588899999866444112-5476666542014555567776377556548
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5555557677776588776447652008999999999999999999999999999999636
Q gi|254780381|r 69 GLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
T Consensus 80 ~~p~~~~YdP~hP~AD~~GyV~~PnVd~~~EMvdm~~AsRsYEANv~v~~~aK~m~~~tL~ 140 (143)
T PRK12630 80 KSPLRKVYDPSHPDADEEGYVSMPNVNVLNEMADMMASTRSYEANVTAMNAEKSMFSKALE 140 (143)
T ss_pred CCCCCCEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9850011289999978798884689888999999999999999999999999999999998