HHsearch alignment for GI: 254780381 and conserved domain: PRK12630

>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=99.95  E-value=5.3e-28  Score=168.35  Aligned_cols=128  Identities=20%  Similarity=0.134  Sum_probs=106.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHHHHHCC------CCCCCCCCCCCC
Q ss_conf             9601489999999999999999999631001377------7653322105676654432113------466511345666
Q gi|254780381|r    1 MQPITFFQIASQHANWLSERQKIVSENIANASTP------NYRAKDISSFETILNQNFLMAR------THETHLKESDSS   68 (130)
Q Consensus         1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTP------gYk~~dv~~F~~~l~~~~~~~~------~~~~~~~~~~~~   68 (130)
T Consensus         1 M~~~~~~~Ia~sgl~Aqr~Rl~~ia~NiANa~tt~~~~g~pYrrk~~v-f~~~~~~~~~~~~~~~~~~~~gV~v~~i~~d   79 (143)
T PRK12630          1 MKAFDSMRISASGLSAERLRMDTIASNISNASTTRTANGGPYRRKIAV-FQENLNNELNKKNGAYEKKLYGVKAVGIVED   79 (143)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCEEEEEEECC
T ss_conf             972557869999999999999999987653588899999866444112-5476666542014555567776377556548


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5555557677776588776447652008999999999999999999999999999999636
Q gi|254780381|r   69 GLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR  129 (130)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~  129 (130)
T Consensus        80 ~~p~~~~YdP~hP~AD~~GyV~~PnVd~~~EMvdm~~AsRsYEANv~v~~~aK~m~~~tL~  140 (143)
T PRK12630         80 KSPLRKVYDPSHPDADEEGYVSMPNVNVLNEMADMMASTRSYEANVTAMNAEKSMFSKALE  140 (143)
T ss_pred             CCCCCCEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9850011289999978798884689888999999999999999999999999999999998