HHsearch alignment for GI: 254780381 and conserved domain: PRK12643
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=98.57 E-value=4.3e-08 Score=62.29 Aligned_cols=44 Identities=32% Similarity=0.429 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 96014899999999999999999996310013777653322105676
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETI 47 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~ 47 (130)
T Consensus 1 Mdr~iY--tA~sg~~~~~~~~~viaNNLANvnT~GFK~~~-~~~~~~ 44 (209)
T PRK12643 1 MDHAIY--TAMGAARQSLELQAVTANNLANASTPGFRAQL-AAMRAV 44 (209)
T ss_pred CCHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCH-HHHHCC
T ss_conf 926899--99999999999888998887747876443104-534231