HHsearch alignment for GI: 254780381 and conserved domain: PRK12782
>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed.
Probab=99.94 E-value=1.2e-26 Score=161.20 Aligned_cols=124 Identities=22% Similarity=0.214 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6014899999999999999999996310013777-------653322105676654432113466511345666555555
Q gi|254780381|r 2 QPITFFQIASQHANWLSERQKIVSENIANASTPN-------YRAKDISSFETILNQNFLMARTHETHLKESDSSGLHWNA 74 (130)
Q Consensus 2 ~~~~~f~~~~~~l~~~~~R~~via~NIANadTPg-------Yk~~dv~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (130)
T Consensus 4 ~L~~~~~Ia~sgm~Aq~~Rl~~iAsNlANa~st~~~~~~~py~~k~v~-f~~~~~~~~~~~gV~v~~i~---~d~~p~~~ 79 (138)
T PRK12782 4 PLQASLRIASSGLEAQSTRLRVVSENLANAQSTGRTPGADPYQRKTVT-FRAELDRAAGAALVRVKEIG---VDTAPFRV 79 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEHHHCCCCCCCCEEEEEEE---CCCCCCCC
T ss_conf 789999999999999999999999877424667879888764013223-41310344677741341334---38986423
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7677776588776447652008999999999999999999999999999999636
Q gi|254780381|r 75 HVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 75 ~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
T Consensus 80 ~YdP~hP~Ad~~GyV~~pnVn~~~EMvdm~~AsRsYeANv~v~~tak~m~~~tL~ 134 (138)
T PRK12782 80 EYDPGNPAADENGYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVSMTID 134 (138)
T ss_pred CCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4499999987678854689888999999999999999999999999999999999