HHsearch alignment for GI: 254780381 and conserved domain: PRK12782

>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed.
Probab=99.94  E-value=1.2e-26  Score=161.20  Aligned_cols=124  Identities=22%  Similarity=0.214  Sum_probs=103.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6014899999999999999999996310013777-------653322105676654432113466511345666555555
Q gi|254780381|r    2 QPITFFQIASQHANWLSERQKIVSENIANASTPN-------YRAKDISSFETILNQNFLMARTHETHLKESDSSGLHWNA   74 (130)
Q Consensus         2 ~~~~~f~~~~~~l~~~~~R~~via~NIANadTPg-------Yk~~dv~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (130)
T Consensus         4 ~L~~~~~Ia~sgm~Aq~~Rl~~iAsNlANa~st~~~~~~~py~~k~v~-f~~~~~~~~~~~gV~v~~i~---~d~~p~~~   79 (138)
T PRK12782          4 PLQASLRIASSGLEAQSTRLRVVSENLANAQSTGRTPGADPYQRKTVT-FRAELDRAAGAALVRVKEIG---VDTAPFRV   79 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEHHHCCCCCCCCEEEEEEE---CCCCCCCC
T ss_conf             789999999999999999999999877424667879888764013223-41310344677741341334---38986423


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             7677776588776447652008999999999999999999999999999999636
Q gi|254780381|r   75 HVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR  129 (130)
Q Consensus        75 ~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~  129 (130)
T Consensus        80 ~YdP~hP~Ad~~GyV~~pnVn~~~EMvdm~~AsRsYeANv~v~~tak~m~~~tL~  134 (138)
T PRK12782         80 EYDPGNPAADENGYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVSMTID  134 (138)
T ss_pred             CCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4499999987678854689888999999999999999999999999999999999