HHsearch alignment for GI: 254780381 and conserved domain: TIGR01396

>TIGR01396 FlgB flagellar basal-body rod protein FlgB; InterPro: IPR006300 Many bacterial species swim actively by means of flagella. The flagella organelle is made of three parts: the basal body, the hook and the filament. The basal body consists of four rings (L,P,S, and M) mounted on a central rod . In Salmonella typhimurium and related organisms the rod has been shown to consist of four different, yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB, flgC, and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. These sequences represent FlgB, one of several components of bacterial flagella. FlgB is part of the basal body.; GO: 0019861 flagellum.
Probab=99.57  E-value=1.4e-14  Score=96.86  Aligned_cols=122  Identities=29%  Similarity=0.370  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC--------CCCC--CCCCCCCCCCCCCC
Q ss_conf             4899999999999999999996310013777653322105676654432113--------4665--11345666555555
Q gi|254780381|r    5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMAR--------THET--HLKESDSSGLHWNA   74 (130)
Q Consensus         5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~~~~--------~~~~--~~~~~~~~~~~~~~   74 (130)
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~-~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   79 (134)
T TIGR01396         3 RALGLLQKALDLRSLRQEVLANNIANADTPGYKAKDL-SFEAELKKALDKERDSNLTLALTDTRPRHLNAEGS--LGYLL   79 (134)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHC-CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCC
T ss_conf             1044677776577776666654310035665310110-27888888764100000000013554210121000--01222


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             7677776588776447652008999999999999999999999999999999636
Q gi|254780381|r   75 HVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR  129 (130)
Q Consensus        75 ~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~  129 (130)
T Consensus        80 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (134)
T TIGR01396        80 VEPSLLLDLPTQLKNDGNNVDLDSEMAELAKNSLLYQALLSFLNGKFKGLNSVLR  134 (134)
T ss_pred             CCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             3320000122100135651003577888776567899999987655444554319