HHsearch alignment for GI: 254780381 and conserved domain: TIGR02489
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=92.91 E-value=0.012 Score=33.35 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 999999999999996310013777653322105676654432113
Q gi|254780381|r 12 QHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMAR 56 (130)
Q Consensus 12 ~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~~~~ 56 (130)
T Consensus 10 sgmQAHQvAlDVEgNNIaNVNTtGFKYSRA-~F~dMlSQ~~~IAT 53 (877)
T TIGR02489 10 SGMQAHQVALDVEGNNIANVNTTGFKYSRA-DFGDMLSQVKKIAT 53 (877)
T ss_pred HHHHHHEEEEECCCCCCCCCCCCCEEEEEC-CHHHHHHHHHEEEE
T ss_conf 011020133310446403313455004304-31124244000230