Query gi|254780381|ref|YP_003064794.1| flagellar basal body rod protein FlgB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 130
No_of_seqs 119 out of 1340
Neff 7.9
Searched_HMMs 39220
Date Sun May 29 15:29:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780381.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06003 flgB flagellar basal 100.0 1.8E-39 4.5E-44 229.5 12.6 125 1-130 1-126 (126)
2 PRK12627 flgB flagellar basal 100.0 4.6E-37 1.2E-41 216.6 12.8 122 1-128 2-125 (128)
3 PRK05680 flgB flagellar basal 100.0 1.9E-35 4.9E-40 208.0 12.9 123 2-130 3-135 (137)
4 PRK12626 flgB flagellar basal 100.0 7.6E-35 1.9E-39 204.8 12.0 129 1-130 2-160 (162)
5 PRK12624 flgB flagellar basal 100.0 1.6E-34 4.2E-39 203.0 13.0 125 3-130 7-142 (143)
6 PRK06797 flgB flagellar basal 100.0 1.7E-34 4.4E-39 202.9 10.9 118 5-130 3-134 (135)
7 PRK12621 flgB flagellar basal 100.0 5.3E-34 1.4E-38 200.3 12.9 121 5-130 7-133 (136)
8 PRK12620 flgB flagellar basal 100.0 7.7E-34 2E-38 199.5 13.2 119 5-130 7-131 (132)
9 PRK12622 flgB flagellar basal 100.0 1E-33 2.6E-38 198.8 13.2 122 5-129 6-135 (135)
10 PRK12623 flgB flagellar basal 100.0 7E-34 1.8E-38 199.7 12.2 118 5-129 11-131 (131)
11 COG1815 FlgB Flagellar basal b 100.0 1.4E-33 3.5E-38 198.1 12.6 123 1-130 2-132 (133)
12 PRK06004 flgB flagellar basal 100.0 8.9E-34 2.3E-38 199.1 11.4 116 9-130 1-125 (126)
13 PRK12619 flgB flagellar basal 100.0 2E-33 5.2E-38 197.2 13.0 120 3-130 5-129 (130)
14 PRK12625 flgB flagellar basal 100.0 2.9E-33 7.4E-38 196.4 13.2 121 3-130 5-131 (132)
15 PRK07182 flgB flagellar basal 100.0 3.7E-33 9.3E-38 195.8 12.4 128 2-130 4-147 (148)
16 PRK12685 flgB flagellar basal 100.0 1E-32 2.5E-37 193.5 12.6 111 3-130 5-115 (116)
17 PRK12632 flgC flagellar basal 100.0 1.4E-29 3.5E-34 176.8 11.2 125 1-129 2-126 (130)
18 TIGR01395 FlgC flagellar basal 100.0 2.3E-30 5.9E-35 180.9 7.2 125 4-129 1-144 (147)
19 PRK12628 flgC flagellar basal 100.0 2.8E-28 7.3E-33 169.8 12.6 128 1-129 1-137 (140)
20 PRK12630 flgC flagellar basal 100.0 5.3E-28 1.4E-32 168.4 12.6 128 1-129 1-140 (143)
21 COG1558 FlgC Flagellar basal b 100.0 1.4E-28 3.6E-33 171.4 9.6 128 1-129 1-134 (137)
22 PRK06802 flgC flagellar basal 100.0 6.4E-28 1.6E-32 167.9 12.5 127 1-129 1-137 (141)
23 PRK12629 flgC flagellar basal 100.0 6.2E-28 1.6E-32 168.0 12.2 125 1-129 1-132 (135)
24 PRK12631 flgC flagellar basal 100.0 7.1E-28 1.8E-32 167.7 12.2 128 1-129 1-135 (138)
25 PRK12782 flgC flagellar basal 99.9 1.2E-26 3E-31 161.2 11.4 124 2-129 4-134 (138)
26 PRK05681 flgC flagellar basal 99.9 1.3E-26 3.3E-31 161.0 11.3 128 1-129 1-135 (139)
27 TIGR02488 flgG_G_neg flagellar 99.8 2.7E-19 7E-24 121.9 8.8 45 7-52 2-46 (263)
28 PRK12642 flgF flagellar basal 99.7 1E-15 2.5E-20 103.0 11.5 44 86-129 192-235 (241)
29 PRK12690 flgF flagellar basal 99.7 7.5E-16 1.9E-20 103.6 10.5 44 86-129 190-233 (237)
30 PRK12691 flgG flagellar basal 99.6 2.3E-15 5.9E-20 101.0 10.8 44 86-129 216-259 (262)
31 PRK12689 flgF flagellar basal 99.6 1.9E-15 4.8E-20 101.5 10.3 44 86-129 203-246 (253)
32 PRK12817 flgG flagellar basal 99.6 4.8E-15 1.2E-19 99.3 10.1 43 86-128 215-257 (261)
33 PRK12693 flgG flagellar basal 99.6 9.3E-15 2.4E-19 97.8 11.5 44 86-129 216-259 (261)
34 COG4786 FlgG Flagellar basal b 99.6 6.3E-15 1.6E-19 98.7 10.5 44 86-129 219-262 (265)
35 PRK12636 flgG flagellar basal 99.6 1.5E-14 3.9E-19 96.7 12.1 44 86-129 217-260 (263)
36 PRK12818 flgG flagellar basal 99.6 4.7E-15 1.2E-19 99.4 9.5 44 86-129 207-250 (255)
37 PRK12694 flgG flagellar basal 99.6 9.2E-15 2.4E-19 97.8 10.8 44 86-129 216-259 (260)
38 PRK12816 flgG flagellar basal 99.6 1.6E-14 4E-19 96.6 11.4 44 86-129 218-261 (264)
39 PRK12692 flgG flagellar basal 99.6 2.1E-14 5.4E-19 95.9 10.6 44 86-129 216-259 (262)
40 TIGR01396 FlgB flagellar basal 99.6 1.4E-14 3.6E-19 96.9 9.3 122 5-129 3-134 (134)
41 PRK12819 flgG flagellar basal 99.5 9.6E-14 2.4E-18 92.4 11.3 43 86-128 210-252 (257)
42 PRK12640 flgF flagellar basal 99.5 5.7E-14 1.5E-18 93.6 9.2 44 86-129 198-241 (246)
43 PRK12641 flgF flagellar basal 99.5 1.4E-13 3.7E-18 91.5 10.0 43 86-128 203-245 (252)
44 TIGR03506 FlgEFG_subfam fagell 99.4 2E-12 5.2E-17 85.3 7.0 43 7-50 3-45 (231)
45 TIGR02490 flgF flagellar basal 99.0 3.1E-09 7.9E-14 68.4 8.1 41 87-127 208-248 (254)
46 PRK05682 flgE flagellar hook p 98.9 1.5E-09 3.7E-14 70.1 4.5 41 89-129 372-412 (414)
47 PRK07521 flgK flagellar hook-a 98.8 3.1E-09 8E-14 68.3 4.4 42 1-42 1-42 (482)
48 PRK07739 flgK flagellar hook-a 98.8 2.5E-09 6.4E-14 68.9 3.8 45 2-47 3-47 (500)
49 PRK07191 flgK flagellar hook-a 98.7 5.8E-08 1.5E-12 61.6 7.5 42 4-46 1-42 (456)
50 PRK06803 flgE flagellar hook p 98.7 1.1E-08 2.7E-13 65.5 3.1 42 88-129 355-396 (398)
51 PRK12714 flgK flagellar hook-a 98.7 2E-08 5.1E-13 64.0 3.8 42 4-46 1-42 (624)
52 PRK12715 flgK flagellar hook-a 98.6 4.4E-08 1.1E-12 62.3 3.7 42 4-46 1-42 (649)
53 pfam00460 Flg_bb_rod Flagella 98.6 2.8E-08 7.2E-13 63.3 2.7 31 7-37 1-31 (31)
54 PRK08471 flgK flagellar hook-a 98.6 5.7E-08 1.4E-12 61.6 4.2 41 2-42 3-43 (612)
55 PRK06799 flgK flagellar hook-a 98.6 4.8E-08 1.2E-12 62.0 3.9 42 4-46 3-44 (431)
56 PRK12643 flgF flagellar basal 98.6 4.3E-08 1.1E-12 62.3 3.5 44 1-47 1-44 (209)
57 COG1749 FlgE Flagellar hook pr 98.6 3.2E-08 8.2E-13 63.0 2.8 50 5-55 3-52 (423)
58 PRK12637 flgE flagellar hook p 98.6 3.7E-08 9.3E-13 62.7 3.1 41 89-129 431-471 (473)
59 PRK05841 flgE flagellar hook p 98.6 3.9E-08 9.8E-13 62.5 3.1 43 9-52 7-49 (605)
60 PRK08147 flgK flagellar hook-a 98.5 3.5E-07 9E-12 57.4 7.7 39 4-42 2-40 (547)
61 PRK06945 flgK flagellar hook-a 98.5 8.4E-08 2.1E-12 60.7 4.0 38 5-42 3-40 (649)
62 TIGR02492 flgK_ends flagellar 98.5 7.6E-08 1.9E-12 61.0 3.5 38 5-42 1-38 (495)
63 PRK08425 flgE flagellar hook p 98.5 4.4E-08 1.1E-12 62.2 1.9 42 10-52 8-49 (716)
64 PRK08871 flgK flagellar hook-a 98.5 1.5E-07 3.8E-12 59.4 4.1 39 4-42 3-41 (626)
65 PRK06665 flgK flagellar hook-a 98.5 1.7E-07 4.3E-12 59.1 4.2 44 2-46 3-46 (628)
66 PRK05683 flgK flagellar hook-a 98.4 2.1E-07 5.3E-12 58.6 3.9 38 5-42 2-39 (676)
67 COG1256 FlgK Flagellar hook-as 98.2 1.1E-06 2.8E-11 54.8 3.6 42 1-42 1-42 (552)
68 PRK05682 flgE flagellar hook p 98.2 1.2E-06 3.2E-11 54.5 3.6 43 8-51 4-46 (414)
69 COG4787 FlgF Flagellar basal b 98.2 8.6E-06 2.2E-10 50.0 7.3 41 86-126 203-243 (251)
70 PRK12637 flgE flagellar hook p 98.0 2.8E-06 7E-11 52.7 2.7 44 7-51 3-46 (473)
71 PRK06803 flgE flagellar hook p 98.0 3.8E-06 9.7E-11 51.9 3.1 44 7-51 3-46 (398)
72 PRK08425 flgE flagellar hook p 98.0 3.7E-06 9.5E-11 52.0 2.8 43 87-129 671-713 (716)
73 PRK05841 flgE flagellar hook p 98.0 2.2E-06 5.6E-11 53.2 1.5 42 88-129 561-602 (605)
74 pfam06429 DUF1078 Domain of un 98.0 1.7E-05 4.3E-10 48.5 5.6 38 92-129 1-38 (39)
75 PRK07739 flgK flagellar hook-a 97.7 6.9E-05 1.8E-09 45.2 5.2 39 91-129 455-493 (500)
76 TIGR02492 flgK_ends flagellar 97.7 9E-05 2.3E-09 44.6 5.5 41 89-129 454-494 (495)
77 COG1749 FlgE Flagellar hook pr 97.6 2.1E-05 5.2E-10 48.0 0.9 43 87-129 378-420 (423)
78 PRK07521 flgK flagellar hook-a 97.5 0.00025 6.3E-09 42.3 5.5 39 91-129 441-479 (482)
79 PRK06799 flgK flagellar hook-a 97.4 0.00033 8.4E-09 41.6 5.4 40 90-129 390-429 (431)
80 PRK07191 flgK flagellar hook-a 97.4 0.0004 1E-08 41.1 5.4 40 90-129 415-454 (456)
81 PRK08471 flgK flagellar hook-a 97.4 0.00041 1.1E-08 41.1 5.4 41 89-129 569-609 (612)
82 PRK05683 flgK flagellar hook-a 97.4 0.00044 1.1E-08 40.9 5.5 41 90-130 635-675 (676)
83 PRK08147 flgK flagellar hook-a 97.3 0.00052 1.3E-08 40.5 5.5 40 90-129 506-545 (547)
84 PRK06665 flgK flagellar hook-a 97.3 0.00047 1.2E-08 40.8 5.3 39 91-129 586-624 (628)
85 PRK12714 flgK flagellar hook-a 97.3 0.00052 1.3E-08 40.5 5.4 41 89-129 581-621 (624)
86 PRK12715 flgK flagellar hook-a 97.3 0.00053 1.3E-08 40.5 5.4 41 89-129 606-646 (649)
87 PRK06945 flgK flagellar hook-a 97.3 0.00054 1.4E-08 40.4 5.5 41 89-129 607-647 (649)
88 PRK08871 flgK flagellar hook-a 97.3 0.00065 1.7E-08 40.0 5.5 40 90-129 585-624 (626)
89 COG1256 FlgK Flagellar hook-as 97.2 0.00088 2.2E-08 39.3 5.4 41 89-129 509-549 (552)
90 TIGR02489 flgE_epsilon flagell 96.9 0.00015 3.8E-09 43.4 -0.8 39 90-128 835-873 (877)
91 TIGR02489 flgE_epsilon flagell 92.9 0.012 3E-07 33.4 -1.7 44 12-56 10-53 (877)
92 PRK12804 flagellin; Provisiona 87.9 1.2 3.1E-05 22.6 4.9 38 92-129 267-304 (307)
93 PRK12805 flagellin; Provisiona 86.7 1.3 3.3E-05 22.4 4.5 37 93-129 247-283 (287)
94 PRK12806 flagellin; Provisiona 86.3 1.2 2.9E-05 22.7 4.0 37 93-129 435-471 (475)
95 PRK06819 flagellin; Validated 85.8 1.2 3.1E-05 22.6 3.9 37 93-129 332-368 (371)
96 PRK12807 flagellin; Provisiona 85.5 2 5.2E-05 21.4 5.0 37 93-129 248-284 (287)
97 PRK12808 flagellin; Provisiona 85.3 1.3 3.4E-05 22.4 4.0 37 93-129 421-457 (460)
98 PRK12584 flagellin A; Reviewed 84.9 1.5 3.8E-05 22.1 4.1 37 93-129 471-507 (510)
99 PRK12802 flagellin; Provisiona 84.6 2.5 6.3E-05 20.9 5.1 38 91-128 241-278 (282)
100 PRK13589 flagellin; Provisiona 84.5 1.6 4.1E-05 21.9 4.1 37 93-129 534-570 (573)
101 PRK13588 flagellin B; Provisio 84.4 1.7 4.3E-05 21.9 4.2 37 93-129 475-511 (514)
102 PRK08869 flagellin; Reviewed 84.3 1.9 4.8E-05 21.6 4.4 37 93-129 338-374 (377)
103 pfam00700 Flagellin_C Bacteria 83.7 2.3 6E-05 21.1 4.7 31 93-123 48-78 (84)
104 PRK12803 flagellin; Provisiona 83.4 1.8 4.5E-05 21.7 3.9 37 93-129 296-332 (335)
105 PRK08411 flagellin; Reviewed 83.4 1.9 4.8E-05 21.6 4.1 37 93-129 534-570 (573)
106 PRK08026 flagellin; Validated 83.1 1.9 4.9E-05 21.5 4.0 36 93-128 526-561 (566)
107 PRK12717 flgL flagellar hook-a 78.8 3.1 7.9E-05 20.4 3.9 30 93-122 487-516 (523)
108 PRK08412 flgL flagellar hook-a 77.0 4 0.0001 19.9 4.0 31 92-122 740-770 (777)
109 PRK08870 flgL flagellar hook-a 74.7 4.8 0.00012 19.4 3.9 31 93-123 367-397 (403)
110 COG1344 FlgL Flagellin and rel 74.4 6.2 0.00016 18.8 5.1 37 92-128 320-356 (360)
111 PRK12687 flagellin; Reviewed 66.6 9.4 0.00024 17.9 4.6 36 93-128 272-307 (311)
112 PRK12729 fliE flagellar hook-b 61.3 12 0.0003 17.3 4.9 42 87-128 83-124 (127)
113 PRK07701 flgL flagellar hook-a 61.0 12 0.00031 17.3 3.9 29 93-121 264-292 (301)
114 pfam02049 FliE Flagellar hook- 57.9 14 0.00035 17.0 5.7 42 88-129 53-94 (97)
115 PRK12728 fliE flagellar hook-b 57.2 14 0.00036 16.9 5.7 42 88-129 53-94 (97)
116 TIGR00205 fliE flagellar hook- 52.2 17 0.00044 16.5 5.5 91 20-129 14-111 (114)
117 PRK00253 fliE flagellar hook-b 50.6 18 0.00047 16.3 5.6 42 88-129 60-102 (105)
118 PRK08073 flgL flagellar hook-a 49.2 19 0.00049 16.2 4.1 28 93-120 251-278 (287)
119 PRK06663 flagellar hook-associ 47.5 21 0.00052 16.0 4.1 28 93-120 383-410 (420)
120 PRK07192 flgL flagellar hook-a 41.2 26 0.00066 15.5 4.1 29 93-121 269-297 (305)
121 pfam05409 Peptidase_C30 Corona 40.0 9.4 0.00024 17.9 0.3 17 27-43 64-80 (293)
122 pfam06589 CRA Circumsporozoite 28.3 43 0.0011 14.3 4.7 37 94-130 57-93 (157)
123 PTZ00264 circumsporozoite-rela 27.5 45 0.0011 14.2 4.8 37 94-130 58-94 (162)
No 1
>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=100.00 E-value=1.8e-39 Score=229.50 Aligned_cols=125 Identities=42% Similarity=0.655 Sum_probs=109.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96014899999999999999999996310013777653322105676654-43211346651134566655555576777
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQ-NFLMARTHETHLKESDSSGLHWNAHVIEA 79 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (130)
|+++++|+++++.|+|+++||+|||+|||||||||||+|||.+|++.+++ ...+..|++.|+........ ....
T Consensus 1 m~~l~lf~la~~~~~~~~~Rq~viA~NIANadTPgYkarDv~~Fe~~l~~~~~~l~~T~~~Hi~~~~~~~~-----~~~~ 75 (126)
T PRK06003 1 MSPIYLFDLASRQAQWLSVRQATVAGNIANANTPGYRARDVEPFADVLDKTGLTMAATSPGHLGAEATGID-----VTEA 75 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCC-----CCCC
T ss_conf 97115999999998999999999997220279999861225379999861466401078765077667787-----4223
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 765887764476520089999999999999999999999999999996369
Q gi|254780381|r 80 PLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 80 ~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
.....++..+|||+||||+||+++++|++.|++++++|+++++||++||||
T Consensus 76 ~~~~~~~~~~dGN~V~le~Em~~~aen~~~Y~~~~~l~~~~~~ml~~Ai~G 126 (126)
T PRK06003 76 RPDDSWEVTHSGNSVSLEQEMMKAGEINRDYSLNTAIVKSFHRMMLMTVKG 126 (126)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 326777637999945799999999999999999999999999999998649
No 2
>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional
Probab=100.00 E-value=4.6e-37 Score=216.62 Aligned_cols=122 Identities=25% Similarity=0.364 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--HHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9601489999999999999999999631001377765332210567665443--21134665113456665555557677
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF--LMARTHETHLKESDSSGLHWNAHVIE 78 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (130)
|+++++|+++++.|+|+++||+|||+|||||||||||+|||++|++.+.... ....+++.|+........ ..
T Consensus 2 ~~~l~lf~l~~~~~~~la~Rq~ViA~NIANADTPgYkarDl~~F~~~l~~~~~~~~~~t~~~H~~~~~~~~~------~~ 75 (128)
T PRK12627 2 FEKLEIFRMASAMARHAGERQAVIAQNVANADTPGYRARDLADFAETYASMTAGGLRATRPGHLNGAAAGAA------DP 75 (128)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC------CC
T ss_conf 861289999999999999999999974103799998500004199999844122334477100156767778------76
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77658877644765200899999999999999999999999999999963
Q gi|254780381|r 79 APLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVV 128 (130)
Q Consensus 79 ~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al 128 (130)
.....+..+.+|||+||||+||+++++|++.|++++++++++++||++||
T Consensus 76 ~~~~~~~~~~~dGN~V~le~Em~~~aen~~~Y~~~~~~~~~~~~~lrtAi 125 (128)
T PRK12627 76 VVTDAGGPASPNGNSVSLEEEMLRSAEAKRQHDRALAIYKSSMSLLRTSL 125 (128)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40158998599988355999999999999999999999999999999986
No 3
>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=100.00 E-value=1.9e-35 Score=207.99 Aligned_cols=123 Identities=26% Similarity=0.398 Sum_probs=103.2
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH---------HCCCCCCCCCCCCCCCCC
Q ss_conf 601-4899999999999999999996310013777653322105676654432---------113466511345666555
Q gi|254780381|r 2 QPI-TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFL---------MARTHETHLKESDSSGLH 71 (130)
Q Consensus 2 ~~~-~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~---------~~~~~~~~~~~~~~~~~~ 71 (130)
+.+ +.|++++++|+++++||+|||+|||||||||||++|| .|++.|++... +..|++.|+.......
T Consensus 3 ~~~~~~~~~l~~aLd~~~~Rq~via~NIANadTPgYKa~dv-~Fe~~L~~a~~~~~~~~~~~l~~T~~~Hi~~~~~~~-- 79 (137)
T PRK05680 3 DSFDKALGFQQEALNLRAQRQEVIANNIANADTPGYKARDI-DFESVLAKAMSGRQSGGGLALARTSERHIPAQATTS-- 79 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--
T ss_conf 48999999999999999999999986020268999886627-799999999842566677654557833247777888--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 55576777765887764476520089999999999999999999999999999996369
Q gi|254780381|r 72 WNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
.......+.+..+.+|||+||||+||+++++|++.|++.++++++++++|++||+|
T Consensus 80 ---~~~~~~~~~~~~~~~DGN~Vdle~Em~~~a~N~l~Y~a~~~~l~~~~~~l~~aI~g 135 (137)
T PRK05680 80 ---SKAELLYRDPHQPSNDGNTVDMDVERTEFAKNSLMYQALLTALNGKFKGLMSVLQG 135 (137)
T ss_pred ---CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf ---87632442798647899860879999999999999999999999999999999865
No 4
>PRK12626 flgB flagellar basal body rod protein FlgB; Provisional
Probab=100.00 E-value=7.6e-35 Score=204.80 Aligned_cols=129 Identities=22% Similarity=0.298 Sum_probs=102.1
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH--------------------------
Q ss_conf 9601-4899999999999999999996310013777653322105676654432--------------------------
Q gi|254780381|r 1 MQPI-TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFL-------------------------- 53 (130)
Q Consensus 1 m~~~-~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~-------------------------- 53 (130)
|++| +.|.+..++|++..+||+|||+|||||||||||+||| +|++.|++...
T Consensus 2 ~~~ld~~~~~~~~AL~lR~~RqevlAsNIANadTPgYKArDl-dFe~~L~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (162)
T PRK12626 2 LDKLDAEFAFGRQALDVRAYRQELLSSNIANADTPGYRARDV-DFASTLARALKQTDGGAAAGNAAQLPMAQPAGVTSGM 80 (162)
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 347787736109999999999999985001378999864358-7999999998621355555531001211223444554
Q ss_pred -HCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf -11346651134566--655555576777765887764476520089999999999999999999999999999996369
Q gi|254780381|r 54 -MARTHETHLKESDS--SGLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 54 -~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
+..|++.|+..... +...+........++.+.++..|||+||+|+||+++++|++.|||.++++++++++|++||+|
T Consensus 81 ~l~~T~~~Hl~~~~~~~~~~~~~~~~~~~~yR~p~q~s~DGNtVDld~E~a~faeN~l~YqAsl~fl~~ki~~l~~AI~~ 160 (162)
T PRK12626 81 SMVSTAPGHMAGTVKLIPTGGPSDDYGRAQYRMPLQPALDGNTVDLDTERVQFADNALHYETGMTVMTQQIKTMIAAITS 160 (162)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 31335742125643346566764444540111688868899750469999999999999999999999899999999756
No 5
>PRK12624 flgB flagellar basal body rod protein FlgB; Provisional
Probab=100.00 E-value=1.6e-34 Score=203.03 Aligned_cols=125 Identities=19% Similarity=0.328 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC-----------CCCCCCCCCCCCCCCC
Q ss_conf 01489999999999999999999631001377765332210567665443211-----------3466511345666555
Q gi|254780381|r 3 PITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMA-----------RTHETHLKESDSSGLH 71 (130)
Q Consensus 3 ~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~ 71 (130)
+..-+++++++|++.++||+|||+||||+||||||++|| .|++.|+++.... .+++.|+.......
T Consensus 7 f~kT~~lL~kaLd~~~~Rq~vIa~NIAN~dTPgYK~~dv-~Fe~~L~~al~~~~~~~~~~~~~~~t~~rHi~~~~~~~-- 83 (143)
T PRK12624 7 FMKTQDLLERGMNNSIQKRKVISDNIANADVPHFKRSEV-IFESMIKRAIESEKIEKEKEVPTQISDERHIQFFKPLD-- 83 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC--
T ss_conf 026999999999999999999986011268999763206-29999999986022234445666668722125678887--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 55576777765887764476520089999999999999999999999999999996369
Q gi|254780381|r 72 WNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
..........+.....++||||||+|.||+++++|++.|++.++.++++++++++|||+
T Consensus 84 ~~~~~~~~~~d~~t~~r~DGNnVDid~Em~~la~N~l~Y~al~~~l~~~~~~lr~vIk~ 142 (143)
T PRK12624 84 YREVQPKTNLDYLTTMRADGNNVDVEKEVVEASNSQMQYMLMIERLNQNYRLLKQVMRM 142 (143)
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 34467424304676558998726899999999999999999999999789999999736
No 6
>PRK06797 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=100.00 E-value=1.7e-34 Score=202.90 Aligned_cols=118 Identities=25% Similarity=0.399 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--------------HHCCCCCCCCCCCCCCCC
Q ss_conf 489999999999999999999631001377765332210567665443--------------211346651134566655
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF--------------LMARTHETHLKESDSSGL 70 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~--------------~~~~~~~~~~~~~~~~~~ 70 (130)
+++.++++.|+++++||+|||+||||||||||||||| +|++.|++.. .+..|++.|++.......
T Consensus 3 ~~~~~~g~~Ld~r~~Rq~viAsNIANadTPgYKarDv-~Fe~~L~~a~~~~~~~~~~~~~~~~l~~T~~~Hl~~~~~~~~ 81 (135)
T PRK06797 3 DLVSDVGHYMNYLVTKRNTVSSNIANANTPGYKAQDV-TFAEQMNKSSALYKSNAADLKSNPDLYQTNEMHLPTVNTKNT 81 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCC
T ss_conf 2899999998899999999986102478999864338-799999998876530111235677635477655688778887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 555576777765887764476520089999999999999999999999999999996369
Q gi|254780381|r 71 HWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
... ....+.....|||+||||+||++|++|++.|+|.+++++++++ |++||||
T Consensus 82 ~~~------~~~~~~~~~~DGNtVD~d~Em~~~a~N~l~Yqas~~~Ln~k~s-l~~AirG 134 (135)
T PRK06797 82 YAK------IQTKSMQTNKDGNSVDVTTEMLDLMKANQLYGISINAINTQYA-INQAARG 134 (135)
T ss_pred CCE------EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHCC
T ss_conf 743------6558998489997557899999999999999999999825541-8888647
No 7
>PRK12621 flgB flagellar basal body rod protein FlgB; Provisional
Probab=100.00 E-value=5.3e-34 Score=200.31 Aligned_cols=121 Identities=23% Similarity=0.272 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH------HCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4899999999999999999996310013777653322105676654432------1134665113456665555557677
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFL------MARTHETHLKESDSSGLHWNAHVIE 78 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (130)
+-+++++++|+|+++||+|||+|||||||||||+||| .|++.|+.+.. +..|++.|++....+........
T Consensus 7 ~~i~ll~~aLd~~~~Rq~via~NIANadTPgYKardv-~Fe~~L~~a~~~~~~~~l~~T~~~Hi~~~~~~~~~~~~~~-- 83 (136)
T PRK12621 7 PHVNLVGKVMDMQLQRQNVVMSNIANVRTPGYKPREL-EFEKQLQSALGLDAKGRMTRTEENHLPAVFDPEGFGPEWS-- 83 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE--
T ss_conf 7999999999999999999997132058999874418-7899999987614478645577131578889776775401--
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7765887764476520089999999999999999999999999999996369
Q gi|254780381|r 79 APLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 79 ~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
.........|||+||||+||+++++|++.|++.++++++++++|++||+|
T Consensus 84 --~~~~~~~~~dgN~Vdid~Em~~la~N~l~Y~a~~~~l~~~~~~l~~aI~~ 133 (136)
T PRK12621 84 --KAFKPRVVHGEDRVNLDKEMAKMAKNSLQYNALTTVIKGNFEGVKNIIME 133 (136)
T ss_pred --ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf --04787646899876548999999999999999999999999999999983
No 8
>PRK12620 flgB flagellar basal body rod protein FlgB; Provisional
Probab=100.00 E-value=7.7e-34 Score=199.46 Aligned_cols=119 Identities=22% Similarity=0.332 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH------HHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 489999999999999999999631001377765332210567665443------21134665113456665555557677
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF------LMARTHETHLKESDSSGLHWNAHVIE 78 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (130)
+.|++++++|+++++||+|||+|||||||||||+||| +|++.|+... .+.+|++.|+........ +.
T Consensus 7 ~~~~~~~~aL~lr~~Rq~viasNIANadTPgYKardv-~Fe~~L~~a~~~~~~~~l~~T~~~H~~~~~~~~~-~~----- 79 (132)
T PRK12620 7 SFLGVHGDALTLREQRMKLIASNLSNVDTPGYKAKDL-NFEAALKSAQGEQDGGLMQTTDAKHYEVGGGGLN-PF----- 79 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CC-----
T ss_conf 7862889999999999999986022168999876658-7899999986646677554467330167778889-74-----
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7765887764476520089999999999999999999999999999996369
Q gi|254780381|r 79 APLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 79 ~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
.....+..+..|||+||+|+||+++++|++.|++.++++++++++|++||+|
T Consensus 80 ~~~~~~~~~~~DGNtVd~d~Em~~~aeN~l~Y~a~~~~l~~ki~~l~~AI~G 131 (132)
T PRK12620 80 QITREADQPSLDGNTVDPDAERAAYGRAALEYRASLSFLESKVRSMLTAITG 131 (132)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 1235788867899850669999999999999999999999999999998648
No 9
>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional
Probab=100.00 E-value=1e-33 Score=198.83 Aligned_cols=122 Identities=25% Similarity=0.348 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--------HHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 489999999999999999999631001377765332210567665443--------211346651134566655555576
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF--------LMARTHETHLKESDSSGLHWNAHV 76 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 76 (130)
.-|++++++|++.++||+|||+||||+||||||++|| .|++.|+++. .+..|++.|+.+...+.... ..
T Consensus 6 ~ti~ll~kaLd~~~~Rq~via~NIANadTPgYK~~dv-~Fe~~L~~Al~~~~~~~l~l~~t~~~Hi~~~~~~~~~~--~~ 82 (135)
T PRK12622 6 RSVDLSHRYLDVLSLRQSVIADNIANVDTPNFKRSKV-TFESELERAILNEDKNDLSLIRGNDKHLSGFKELGYLD--VK 82 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC--CC
T ss_conf 8999999998899999999985010278999752407-69999999985377777765558865667777777555--65
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 77776588776447652008999999999999999999999999999999636
Q gi|254780381|r 77 IEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 77 ~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+....+.....+.|||+||+|.||++|++|++.|++.+++++++++++++|||
T Consensus 83 p~~~~~~~~~~~~DGNnVDid~Em~~la~N~l~Y~al~~~l~~~f~~l~~vIk 135 (135)
T PRK12622 83 PHRMLDHLSTLNNNGNNVDIDSEMKALVQNQMMYHLFTNIQAHHFKSVNIVIK 135 (135)
T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 04640788766799987588999999999999999999999989999999859
No 10
>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional
Probab=100.00 E-value=7e-34 Score=199.68 Aligned_cols=118 Identities=24% Similarity=0.388 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH---HHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 489999999999999999999631001377765332210567665443---21134665113456665555557677776
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF---LMARTHETHLKESDSSGLHWNAHVIEAPL 81 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (130)
--|++++++|++.++||+|||+|||||||||||++|| .|++.|++.. .+.+|++.|+....... ......
T Consensus 11 ~tf~ll~~aLd~~~~Rq~vIa~NIANadTPgYKa~dv-~Fe~~L~~a~~~~~l~~T~~~Hi~~~~~~~------~~~~~~ 83 (131)
T PRK12623 11 LTYDLLKKGLDASSYRGKVISNNIANVNTKDYKRHYV-TFEETLKDNLDNLELKTTNEKHINDGVEFG------QIKEKR 83 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCC------CCEEEE
T ss_conf 5899999999999999999986032168999876558-699999874425876557712037877878------731685
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 588776447652008999999999999999999999999999999636
Q gi|254780381|r 82 DQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 82 ~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+.+...++|||+||+|+||+++++|++.|++.++++++++++|++||-
T Consensus 84 ~~~~~~r~DGNnVDid~Em~~laeN~l~Y~a~~~~l~~k~~~lk~aI~ 131 (131)
T PRK12623 84 DESTSMRTDGNNVDIDNEMVNQAANTLMYNALITQLNNRLATTRYIIN 131 (131)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 689986899986779999999999999999999999989999998629
No 11
>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion]
Probab=100.00 E-value=1.4e-33 Score=198.12 Aligned_cols=123 Identities=27% Similarity=0.379 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-------HHCCCCCCCCC-CCCCCCCCC
Q ss_conf 9601489999999999999999999631001377765332210567665443-------21134665113-456665555
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF-------LMARTHETHLK-ESDSSGLHW 72 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~-------~~~~~~~~~~~-~~~~~~~~~ 72 (130)
|++...|++++++|+|.+.||+|||+|||||||||||||||. |++.|++.. .+..|++.|+. ......
T Consensus 2 ~~~~~~~~l~~~al~~~~~Rq~via~NIANadTP~yKa~dv~-Fe~~L~~~~~~~~~~l~l~~T~~~Hl~~~~~~~~--- 77 (133)
T COG1815 2 MSFDRAFGLLQKALDVRSLRQEVIANNIANADTPGYKAKDVD-FESVLKKALAGNNTTLALAKTSTRHLGPAENIDP--- 77 (133)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCC---
T ss_conf 647899999999988999999999853102799998744475-8999999872477702220088865385224885---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 5576777765887764476520089999999999999999999999999999996369
Q gi|254780381|r 73 NAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 73 ~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
...+..+..+... .|||+||+|.||+++++|++.|++++++++.++.+++.+|||
T Consensus 78 --~~~~~~~~~~~~~-~dGNtVdld~E~~~~~kN~~~Yq~~~~~l~~~~~~~~~vl~g 132 (133)
T COG1815 78 --TDASLLDRIGDQP-NDGNTVDLDREMTEFAKNQLMYQALLSFLKSQIKMLNSVLKG 132 (133)
T ss_pred --CCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf --5444000356556-888704389999999999999999999999999999999717
No 12
>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=100.00 E-value=8.9e-34 Score=199.12 Aligned_cols=116 Identities=25% Similarity=0.428 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHH-------HHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999999999963100137776533221--056766544-------3211346651134566655555576777
Q gi|254780381|r 9 IASQHANWLSERQKIVSENIANASTPNYRAKDIS--SFETILNQN-------FLMARTHETHLKESDSSGLHWNAHVIEA 79 (130)
Q Consensus 9 ~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~--~F~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (130)
|++++|+|+++||+|||+|||||||||||+|||+ .|++.|+.. ..+..|++.|+........ ...
T Consensus 1 ll~~~m~~~~~Rq~via~NIANadTPgYkarDl~~~~F~~~l~~~~~~~~~~~~l~~T~~~Hi~~~~~~~~------~~~ 74 (126)
T PRK06004 1 MLRTRMQWHQERQKVLAENVANSDTPGFRPRDLVEPKFDATGQLAAGSPGGGLAMMRTSASHMAPPGGSPS------FDA 74 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCC------CCC
T ss_conf 93888879999999999724406899988323652519999999860578887534478643288778877------654
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 765887764476520089999999999999999999999999999996369
Q gi|254780381|r 80 PLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 80 ~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
....+++..+|||+||||+||+++++|++.|++.++++++++++|++||.|
T Consensus 75 ~~~~~~~~~~dGN~Vdle~Em~~~aen~~~Y~~~~~~~~~~~~~l~~AIg~ 125 (126)
T PRK06004 75 RRNAGFETRPAGNAVNLEDEMLKVSDNQMDYAAATSLYQKSLGLLKTAIGK 125 (126)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 015786338999814699999999999999999999999999999999756
No 13
>PRK12619 flgB flagellar basal body rod protein FlgB; Provisional
Probab=100.00 E-value=2e-33 Score=197.20 Aligned_cols=120 Identities=20% Similarity=0.352 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH-----HCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 014899999999999999999996310013777653322105676654432-----113466511345666555555767
Q gi|254780381|r 3 PITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFL-----MARTHETHLKESDSSGLHWNAHVI 77 (130)
Q Consensus 3 ~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 77 (130)
+=+.|.++.++|++.++||+|||+|||||||||||+||| +|++.|+.... +..|+..|+..... ...
T Consensus 5 ~d~~~gi~~~aL~~r~~Rq~via~NIANadTPgYKakdv-~Fe~~L~~a~~~~~~~l~~t~~~Hi~~~~~-------~~~ 76 (130)
T PRK12619 5 LDSYFGIHAKALIARDQRASVLANNIANVNTPNFKARDV-DFNEVLTATMAGNSQQLRVTSDQHINTNAD-------FMT 76 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-------CCC
T ss_conf 887866779999999999999986232168999864448-899999998736876654478020478777-------666
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 77765887764476520089999999999999999999999999999996369
Q gi|254780381|r 78 EAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 78 ~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
...++.+.....|||+||+|.||+++++|++.|++.+++++.++++|++||||
T Consensus 77 ~~~~r~~~~~~~DGNtVDid~Ema~~a~N~l~Yqa~~~~l~~k~~~l~~aIkG 129 (130)
T PRK12619 77 HLKYRMTHHASLDGNTVDKDMETTEFARNALNYQASLSFLNGKIKSMLTALKG 129 (130)
T ss_pred CCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 51012688768999742579999999999999999999999999999998658
No 14
>PRK12625 flgB flagellar basal body rod protein FlgB; Provisional
Probab=100.00 E-value=2.9e-33 Score=196.37 Aligned_cols=121 Identities=23% Similarity=0.305 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH------HHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01489999999999999999999631001377765332210567665443------211346651134566655555576
Q gi|254780381|r 3 PITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF------LMARTHETHLKESDSSGLHWNAHV 76 (130)
Q Consensus 3 ~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 76 (130)
+=..|++++++|+++++||+|||+|||||||||||+||| .|++.|+.+. .+.+|++.|+.......... .
T Consensus 5 fd~~~~~~~~aL~~~~~Rq~via~NIANadTPgYKa~dl-~Fe~~L~~a~~~~~~~~l~~T~~~H~~~~~~~~~~~---~ 80 (132)
T PRK12625 5 FDKALGVHQYTLGIRAQRAEVISSNIANADTPHYKARDV-DFSAAMQAARSQQQGLEMTGSDEKHFDLAALTGQHV---K 80 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC---E
T ss_conf 888861789999999999999987143068999886538-899999998754788866547745467767787654---0
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 777765887764476520089999999999999999999999999999996369
Q gi|254780381|r 77 IEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 77 ~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
+.. +......|||+||+|+||+++++|++.|++.++++++++++|++||||
T Consensus 81 ~~~---~~~~~~~DGN~Vdid~Em~~~aeN~l~Y~a~~~~l~~k~~~l~~aI~G 131 (132)
T PRK12625 81 FRV---PNQPDTGDGNTVDIQQEQSAFMQNALEYQMSLGFLDSKFSGMKKALRG 131 (132)
T ss_pred EEC---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 235---787747899811479999999999999999999999999999998758
No 15
>PRK07182 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=100.00 E-value=3.7e-33 Score=195.85 Aligned_cols=128 Identities=18% Similarity=0.176 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC-------CCCCCCCCCCC-----CC
Q ss_conf 6014899999999999999999996310013777653322105676654432113-------46651134566-----65
Q gi|254780381|r 2 QPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMAR-------THETHLKESDS-----SG 69 (130)
Q Consensus 2 ~~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~~~~-------~~~~~~~~~~~-----~~ 69 (130)
++=..|.+..++|++.++||+|||+|||||||||||+||+ +|++.|+++....+ +.+.++..... ..
T Consensus 4 ~f~~~lg~~~~aL~lR~~RqevlAsNIANaDTPgYKArDi-dF~~~L~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (148)
T PRK07182 4 HFQKALGVHPMAMQLRLTRAELLSANLANVNTPNFQAKDI-DFAAEMQRAKRGNGVMAAPDRSSAQMLSTQMSSAQMSSP 82 (148)
T ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3886737059999999999999986122168999866378-889999998704765446665542112444442335774
Q ss_pred CCC----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 555----5576777765887764476520089999999999999999999999999999996369
Q gi|254780381|r 70 LHW----NAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 70 ~~~----~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
... ........++.++++..|||+||||.||+++++|++.||+.+++++++++.|++||||
T Consensus 83 ~~~~~~~~~~~~~~~yR~p~qps~DGNtVdld~E~a~fa~Nal~Yqasl~fl~~ki~~l~~AI~G 147 (148)
T PRK07182 83 QMMSSPQIMSSPQIKYRLPYQPSLDGNTVALNVEQAEFSKNALDYQTSLSFLNMKLTGLKQAIEG 147 (148)
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 33566444667660332688768899740359999999999999999999999999999998748
No 16
>PRK12685 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=100.00 E-value=1e-32 Score=193.53 Aligned_cols=111 Identities=22% Similarity=0.302 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01489999999999999999999631001377765332210567665443211346651134566655555576777765
Q gi|254780381|r 3 PITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHETHLKESDSSGLHWNAHVIEAPLD 82 (130)
Q Consensus 3 ~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
+=+.|++++++|++.++||+|||+|||||||||||+||| .|++.|.+...... +. ........
T Consensus 5 ~d~~~~~~~~aLd~~~~Rq~via~NIANadTPgYKakdl-~F~~~l~~~~~~~~--~~--------------~~~~~~~~ 67 (116)
T PRK12685 5 LDAALGVHPQTLDFRVERSKVLASNLANAETPGYKARDL-DFKAVMSQINAGMQ--PK--------------QQYELSYR 67 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCC--CC--------------CCCCCCCC
T ss_conf 898865789999999999999986033168999876658-89999999856899--88--------------78775416
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 887764476520089999999999999999999999999999996369
Q gi|254780381|r 83 QTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 83 ~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
.+++...|||+||+|+||+++++|++.|++.+++++++++++++||+|
T Consensus 68 ~~~~~~~DGN~Vdld~Em~~~aeN~l~Y~a~~~~l~~~~~~lk~AI~G 115 (116)
T PRK12685 68 VPYQNSADGNTVELGKEQARYSQNAMDYQTSLTFLNMKISGLKSAIEG 115 (116)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 898869999853789999999999999999999999999999998668
No 17
>PRK12632 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.96 E-value=1.4e-29 Score=176.78 Aligned_cols=125 Identities=18% Similarity=0.154 Sum_probs=104.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96014899999999999999999996310013777653322105676654432113466511345666555555767777
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHETHLKESDSSGLHWNAHVIEAP 80 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
|++++.|+++.++|.+++.|+++||+||||+|||+|+++.++ |+..........++....+ ..........+.|.|
T Consensus 2 ~d~~~~~~Ia~Sgl~Aq~~Rl~~iA~NiANa~t~~y~~k~v~-f~~~~~~~~~~~~v~v~~v---~~d~~~~~~~YdP~h 77 (130)
T PRK12632 2 TDFSKSLSVSASGMRAQALRLRHVSENIANADTPGYRRKTVS-FQEERDFGDGVGLVSTGPV---RLDRSELPRIYDPSH 77 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE-EEECCCCCCCCCCEEECCE---ECCCCCCCCCCCCCC
T ss_conf 038899999999999999999999987433688764334440-0012455678775475350---227764000248999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6588776447652008999999999999999999999999999999636
Q gi|254780381|r 81 LDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 81 ~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
|.++..|++.++|||+.+||++|++++|.||||+++++..++|++++|.
T Consensus 78 P~AD~~GyV~~pnVd~~~EMvdm~~AsRsYeANv~v~~t~k~M~~~~L~ 126 (130)
T PRK12632 78 PLADETGYYDGSNVDLVIEIADAREAQRSYEANLRMFDQARQMSSSLLD 126 (130)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9988667736899788999999999999999999999999999999999
No 18
>TIGR01395 FlgC flagellar basal-body rod protein FlgC; InterPro: IPR006299 These sequences represent FlgC, one of several components of bacterial flagella. FlgC is part of the basal body. ; GO: 0019861 flagellum.
Probab=99.96 E-value=2.3e-30 Score=180.94 Aligned_cols=125 Identities=18% Similarity=0.251 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---C--C---CCCCCCCCHHHH-----HHH------HHHHCCCCCCCCCC
Q ss_conf 148999999999999999999963100137---7--7---653322105676-----654------43211346651134
Q gi|254780381|r 4 ITFFQIASQHANWLSERQKIVSENIANAST---P--N---YRAKDISSFETI-----LNQ------NFLMARTHETHLKE 64 (130)
Q Consensus 4 ~~~f~~~~~~l~~~~~R~~via~NIANadT---P--g---Yk~~dv~~F~~~-----l~~------~~~~~~~~~~~~~~ 64 (130)
+++|++++++|.||+.|++|||+|||||+| + + |++|.++ |+.. +.+ ........+..+..
T Consensus 1 ~~~f~v~asaL~AQ~~Rmnv~ssNlANA~s~~~~q~~g~pyrr~~~v-F~~~~~~~~~~~~~~~~~~~~~~~~~~V~V~~ 79 (147)
T TIGR01395 1 LSIFNVSASALSAQRVRMNVVSSNLANADSTRTPQAEGDPYRRRRPV-FEAEVNKEPLSKILYSSDEVSGGAISGVKVAK 79 (147)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE-EEEEECCCCCCCCCCCCHHCCCCCCCCCEEEE
T ss_conf 95203454467777767766553220333435778888654684015-87666475556677563000478977524554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56665555557677776588776447652008999999999999999999999999999999636
Q gi|254780381|r 65 SDSSGLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
...........+.|.||+++..||+..+|||+.+||++|++++|+||||+++++..++|+.++|.
T Consensus 80 v~~d~~pf~~~YdP~hP~AD~~GYV~~PNVn~~~EMVdmi~A~RsYeANv~v~~~~K~m~~~tL~ 144 (147)
T TIGR01395 80 VVEDDSPFKLVYDPTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMLLRTLE 144 (147)
T ss_pred EEECCCCCCCEECCCCCCCCCCCCEECCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22268888612477487778778470585585432321120024788999999999999999999
No 19
>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.96 E-value=2.8e-28 Score=169.79 Aligned_cols=128 Identities=15% Similarity=0.126 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCCC
Q ss_conf 96014899999999999999999996310013777------653322105676654432113---466511345666555
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPN------YRAKDISSFETILNQNFLMAR---THETHLKESDSSGLH 71 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPg------Yk~~dv~~F~~~l~~~~~~~~---~~~~~~~~~~~~~~~ 71 (130)
|+++++|+++.++|.+++.|+++||+||||++|+. |++|.++ |+..+.......+ ..+..+.........
T Consensus 1 M~l~~~~~Ia~sgm~Aqr~Rl~viasNiANa~t~~~~~~~~Y~~k~~v-f~~~~~~~~~~~~~~~~~gV~v~~I~~~~~~ 79 (140)
T PRK12628 1 MSLNAIFDIAASAMTAETVRLTTSAGNMSNANVEAGSPDEVYQAKYPV-FKSVQENANQWMGEQIKAGVKLDGIYESDAE 79 (140)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCH-HHHHHHHHHHHCCCCCCCCEEEEEEECCCCC
T ss_conf 960778889999999999999999998863688888999733531301-3446665543115556787489866637998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5557677776588776447652008999999999999999999999999999999636
Q gi|254780381|r 72 WNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+...+.|.||+++.+|++..+|||+.+||++|++++|.||||+++++..++|++++|.
T Consensus 80 ~~~~YdP~hP~Ad~~GyV~~pnVn~~~EMvdm~~AsRsYEANv~v~~~aK~M~~~aL~ 137 (140)
T PRK12628 80 PHRRYDPNSPIADKDGFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQ 137 (140)
T ss_pred CCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2203699999988898673489888999999999999999999999999999999986
No 20
>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.95 E-value=5.3e-28 Score=168.35 Aligned_cols=128 Identities=20% Similarity=0.134 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHHHHHCC------CCCCCCCCCCCC
Q ss_conf 9601489999999999999999999631001377------7653322105676654432113------466511345666
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTP------NYRAKDISSFETILNQNFLMAR------THETHLKESDSS 68 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTP------gYk~~dv~~F~~~l~~~~~~~~------~~~~~~~~~~~~ 68 (130)
|+.++.|+++.++|.++..|+++||+||||++|. .||+|.++ |+..+........ ..+.++......
T Consensus 1 M~~~~~~~Ia~sgl~Aqr~Rl~~ia~NiANa~tt~~~~g~pYrrk~~v-f~~~~~~~~~~~~~~~~~~~~gV~v~~i~~d 79 (143)
T PRK12630 1 MKAFDSMRISASGLSAERLRMDTIASNISNASTTRTANGGPYRRKIAV-FQENLNNELNKKNGAYEKKLYGVKAVGIVED 79 (143)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCEEEEEEECC
T ss_conf 972557869999999999999999987653588899999866444112-5476666542014555567776377556548
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5555557677776588776447652008999999999999999999999999999999636
Q gi|254780381|r 69 GLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.......+.|.||+++.+|++..||||+.+||++|++++|.||||+++++..++|++++|.
T Consensus 80 ~~p~~~~YdP~hP~AD~~GyV~~PnVd~~~EMvdm~~AsRsYEANv~v~~~aK~m~~~tL~ 140 (143)
T PRK12630 80 KSPLRKVYDPSHPDADEEGYVSMPNVNVLNEMADMMASTRSYEANVTAMNAEKSMFSKALE 140 (143)
T ss_pred CCCCCCEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9850011289999978798884689888999999999999999999999999999999998
No 21
>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion]
Probab=99.95 E-value=1.4e-28 Score=171.38 Aligned_cols=128 Identities=20% Similarity=0.193 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96014899999999999999999996310013777------653322105676654432113466511345666555555
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPN------YRAKDISSFETILNQNFLMARTHETHLKESDSSGLHWNA 74 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPg------Yk~~dv~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (130)
|+.++.|++++++|.+|+.|++|||+|||||+|++ |++|.++ |+..+..........+..+............
T Consensus 1 msl~~~~niagS~l~AQ~~RmnvissNiANa~St~~~~g~pYrrk~vv-F~~~~~~~~~~~~~~~VkV~~I~eD~s~~~~ 79 (137)
T COG1558 1 MSLFSIFNIAGSALSAQSLRLNVISSNIANADSTRTPDGGPYRRKQVV-FSAELFAPTGATGGAGVKVSKIVEDPSPFKL 79 (137)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEE-EEECCCCCCCCCCCCCEEEEEEEECCCCCEE
T ss_conf 921656525547778889998998764303544568999843754567-6551345444578863589887606997500
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7677776588776447652008999999999999999999999999999999636
Q gi|254780381|r 75 HVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 75 ~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+.|.||+++..||+..+|||+..||++|++++|+||||+++++..++|++++|.
T Consensus 80 ~YdP~hP~Ad~~GYV~~PNVn~v~EM~dmisAsRsYeANv~v~~~~K~m~~~tL~ 134 (137)
T COG1558 80 VYDPGHPDADAKGYVKMPNVNVVIEMVDMISASRSYEANVEVLNTAKSMMQKTLE 134 (137)
T ss_pred EECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1188998846367556587658999999999999899999999999999999997
No 22
>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=99.95 E-value=6.4e-28 Score=167.91 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHHHHHCCC--CC--CCCCCCCCCCC
Q ss_conf 96014899999999999999999996310013777------6533221056766544321134--66--51134566655
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPN------YRAKDISSFETILNQNFLMART--HE--THLKESDSSGL 70 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPg------Yk~~dv~~F~~~l~~~~~~~~~--~~--~~~~~~~~~~~ 70 (130)
|+++++|+|+.++|.+++.|+++||+||||++|++ |++|.++ |+..+......... .+ .++........
T Consensus 1 Ms~~~~~~Ia~Sgl~Aqr~Rm~~ia~NiANa~tt~~~~g~~y~~k~~v-f~~~~~~~~~~~~~~~~~~~V~v~~i~~~~~ 79 (141)
T PRK06802 1 MSFNQIYRIAGSAMTAQTIRLNTVASNLANAESPAASAATVYKARSPV-FSAVYSARTAADPRGVQSAQVQVLDVVEVGG 79 (141)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCEEEEEEECCCC
T ss_conf 960778889999999999999999998872688898999866343332-4565534431135577886258875435897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 55557677776588776447652008999999999999999999999999999999636
Q gi|254780381|r 71 HWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
. ...+.|.||+++.+|++.++|||+.+||++|++++|.||||+++++..++|++++|.
T Consensus 80 ~-~~~YdP~hP~Ad~~GyV~~PnVn~~~EMvdm~~AsRsYeANv~~~~~aK~m~~~aL~ 137 (141)
T PRK06802 80 S-VQRYEPNNPLANPQGYVFYPDVNVVSEMADMMSASRSFETNVEVLNSVKSMQQSLLK 137 (141)
T ss_pred C-HHHCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3-311599999989898884689898999999999999999999999999999999998
No 23
>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.95 E-value=6.2e-28 Score=167.97 Aligned_cols=125 Identities=13% Similarity=0.145 Sum_probs=105.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCC
Q ss_conf 96014899999999999999999996310013777------65332210567665443-211346651134566655555
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPN------YRAKDISSFETILNQNF-LMARTHETHLKESDSSGLHWN 73 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPg------Yk~~dv~~F~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 73 (130)
|+++++|++++++|.+++.|+++||+||||++|.. |+++.++ |+..+.... ... +..+...........
T Consensus 1 Ms~~~~~~Is~Sgl~Aqr~Rm~~ia~NiANa~t~~~~~~~~yr~~~~v-f~~~~~~~~~~~~---~V~v~~i~~d~~~~~ 76 (135)
T PRK12629 1 MSNLPIFDVAGSALHAQSVRLSTIASNLANADSVAGSAEATYKPIEPI-FQAQQSRQDPSLT---SVNVKEITTTNAPPI 76 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH-HHHHHCCCCCCCC---CEEEEEEECCCCCCH
T ss_conf 963657769999899999999999998774688898999877640112-5644324578878---667777543798501
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 57677776588776447652008999999999999999999999999999999636
Q gi|254780381|r 74 AHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 74 ~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
..+.|.||+++.+|++.++|||+.+||++|++++|.||||+++++..++|++++|.
T Consensus 77 ~~YdP~hP~AD~~GyV~~pnVn~~~EMvdm~~AsRsYEANv~~~~~aK~m~~~aL~ 132 (135)
T PRK12629 77 RRYEPGHPLADADGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLT 132 (135)
T ss_pred HCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 13499999988898884689888999999999999999999999999999999998
No 24
>PRK12631 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.95 E-value=7.1e-28 Score=167.67 Aligned_cols=128 Identities=19% Similarity=0.185 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCC
Q ss_conf 960148999999999999999999963100137------77653322105676654432-11346651134566655555
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANAST------PNYRAKDISSFETILNQNFL-MARTHETHLKESDSSGLHWN 73 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadT------PgYk~~dv~~F~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 73 (130)
|++++.|++++++|.+++.|+++||+||||++| ..|++|.++ |+..+..... .....+.++...........
T Consensus 1 Ms~~~~~~Ia~sgl~Aqr~Rm~via~NiANa~tt~~~~g~~Yr~k~~v-f~~~~~~~~~~~~~~~gV~v~~i~~~~~~~~ 79 (138)
T PRK12631 1 MSLFNIFDVAGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRARHPI-FEAEMAKAQSQQQASQGVAVKGIVESDKPLL 79 (138)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE-HHHHHHHHHCCCCCCCCEEEEEEECCCCCCC
T ss_conf 962667869999999999999999987763476788999987312211-1355433220367888747877761798611
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 57677776588776447652008999999999999999999999999999999636
Q gi|254780381|r 74 AHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 74 ~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
..+.|.||+++.+|++..+|||+.+||++|++++|.||||+++++..++|++++|.
T Consensus 80 ~~YdP~hP~AD~~GyV~~pNVd~~~EMvdm~~A~RsYeANv~~~~~ak~m~~~aL~ 135 (138)
T PRK12631 80 KEYSPDHPMADADGFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLR 135 (138)
T ss_pred CEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 12089999988788884489888999999999999999999999999999999997
No 25
>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=99.94 E-value=1.2e-26 Score=161.20 Aligned_cols=124 Identities=22% Similarity=0.214 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6014899999999999999999996310013777-------653322105676654432113466511345666555555
Q gi|254780381|r 2 QPITFFQIASQHANWLSERQKIVSENIANASTPN-------YRAKDISSFETILNQNFLMARTHETHLKESDSSGLHWNA 74 (130)
Q Consensus 2 ~~~~~f~~~~~~l~~~~~R~~via~NIANadTPg-------Yk~~dv~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (130)
+.++.|+++.++|.+++.|+++||+||||++|++ |++|.++ |+..+.+.....++....+. ........
T Consensus 4 ~L~~~~~Ia~sgm~Aq~~Rl~~iAsNlANa~st~~~~~~~py~~k~v~-f~~~~~~~~~~~gV~v~~i~---~d~~p~~~ 79 (138)
T PRK12782 4 PLQASLRIASSGLEAQSTRLRVVSENLANAQSTGRTPGADPYQRKTVT-FRAELDRAAGAALVRVKEIG---VDTAPFRV 79 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEHHHCCCCCCCCEEEEEEE---CCCCCCCC
T ss_conf 789999999999999999999999877424667879888764013223-41310344677741341334---38986423
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7677776588776447652008999999999999999999999999999999636
Q gi|254780381|r 75 HVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 75 ~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+.|.||.++.+|++..+|||+.+||++|+.++|.||||+++++..++|++++|.
T Consensus 80 ~YdP~hP~Ad~~GyV~~pnVn~~~EMvdm~~AsRsYeANv~v~~tak~m~~~tL~ 134 (138)
T PRK12782 80 EYDPGNPAADENGYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVSMTID 134 (138)
T ss_pred CCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4499999987678854689888999999999999999999999999999999999
No 26
>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=99.94 E-value=1.3e-26 Score=160.97 Aligned_cols=128 Identities=20% Similarity=0.176 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 96014899999999999999999996310013777------6533221056766544-3211346651134566655555
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPN------YRAKDISSFETILNQN-FLMARTHETHLKESDSSGLHWN 73 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPg------Yk~~dv~~F~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (130)
|+.++.|+++.++|.+++.|+++||+||||++|++ ||+|.++ |+...... .......+.++...........
T Consensus 1 M~~~~~~~ia~sgl~aq~~rl~~~a~NiAN~~tt~t~~g~pYr~k~vv-f~~~~~~~~~~~~~~~gV~v~~i~~d~~~~~ 79 (139)
T PRK05681 1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAGPDGDPYRRKQVV-FAAFGSAELDRGQGTGGVKVAKIVEDQSPFK 79 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEE-EEECCCCCCCCCCCCCCEEEEEEECCCCCHH
T ss_conf 953888999999999999999999985532677789999876431245-5303310002467877658877743897422
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 57677776588776447652008999999999999999999999999999999636
Q gi|254780381|r 74 AHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 74 ~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
..+.|.||+++.+|++..+|||+.+||++|+.++|.||||+++++..++|++++|.
T Consensus 80 ~~YdP~hP~AD~~GyV~~pNVd~~~Emvdm~~A~R~YeAN~~~~~~~k~m~~~~L~ 135 (139)
T PRK05681 80 LVYDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLT 135 (139)
T ss_pred HHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30478998888667154289888999999999999999999999999999999998
No 27
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG; InterPro: IPR012834 This family consists of the FlgG protein of the flagellar apparatus in the proteobacteria and spirochetes. The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod . The rod consists of about 26 subunits of flgG in the distal portion, and flgB, flgC and flgF are thought to build up the proximal portion of the rod with about 6 subunits each.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0009426 flagellin-based flagellum basal body distal rod.
Probab=99.80 E-value=2.7e-19 Score=121.94 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9999999999999999999631001377765332210567665443
Q gi|254780381|r 7 FQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF 52 (130)
Q Consensus 7 f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~ 52 (130)
+.+++.+|+++..|++|||+||||++|.|||+... .||+++.+..
T Consensus 2 L~tAaTGM~AQQtn~~VIsNNLANVnT~GFKk~RA-~FEDL~YQ~~ 46 (263)
T TIGR02488 2 LWTAATGMNAQQTNMDVISNNLANVNTTGFKKDRA-EFEDLLYQTV 46 (263)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHH
T ss_conf 30336558887357888776331102344121236-7655747731
No 28
>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.67 E-value=1e-15 Score=102.96 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=40.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76447652008999999999999999999999999999999636
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+++....|||+..||++|++++|+||++.++++....|+..+|+
T Consensus 192 qG~LE~SNVd~~~EM~~lI~~qRafe~~~k~i~~~D~~l~~ai~ 235 (241)
T PRK12642 192 QGYLEGSNVNAMTEMTRLISVSRAFESVSSLMRDSESSVSEAIK 235 (241)
T ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57410330629999999999999999999999999999999999
No 29
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.67 E-value=7.5e-16 Score=103.62 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=40.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76447652008999999999999999999999999999999636
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+++....|||+..||++|++++|+||++.++++...+++.++|+
T Consensus 190 qG~LE~SNVn~~~EMv~mI~~qR~fe~~~k~i~~~De~~~~ain 233 (237)
T PRK12690 190 QGFLEGSNVNPILEIARMIEVQRAYELGQSFLDAEDDRIRQTIR 233 (237)
T ss_pred ECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 35210122689999999999999999998999999999999999
No 30
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.64 E-value=2.3e-15 Score=101.03 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=40.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76447652008999999999999999999999999999999636
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+++....|||+..||++|++++|.||++.++++...+|+.++++
T Consensus 216 qG~LE~SNVd~~~Em~~mI~~qRaye~n~k~i~t~De~~~~a~n 259 (262)
T PRK12691 216 QGYLEASNVDVVKEITDLITAQRAYEMNSKVISAADEMLQTTSK 259 (262)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 38565344659999999999999999999999999999999998
No 31
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.64 E-value=1.9e-15 Score=101.51 Aligned_cols=44 Identities=7% Similarity=0.131 Sum_probs=40.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76447652008999999999999999999999999999999636
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+++....|||+.+||++|++++|+||++.++++...+|+++||+
T Consensus 203 qG~LE~SNVd~~~EM~~mI~~qRafe~n~k~i~~~Dem~~~ai~ 246 (253)
T PRK12689 203 QGYIEKSNVNAVLEMTRMMEVTRTYTQVSSMLQQQSDLRKTAIE 246 (253)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 27322023649999999999999999999999999999999999
No 32
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.61 E-value=4.8e-15 Score=99.34 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=38.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7644765200899999999999999999999999999999963
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVV 128 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al 128 (130)
+++....|||+..||++|++++|.||++.++++...+|+..+.
T Consensus 215 qG~LE~SNV~~~~EMv~li~~qRaye~n~k~i~t~Dem~~~~n 257 (261)
T PRK12817 215 QGYLENSNVDLGKEMTDMIITQRAFQLSSKGIKTADEMWGIIN 257 (261)
T ss_pred CCCEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4852112173999999999999999999899999999999998
No 33
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=99.61 E-value=9.3e-15 Score=97.78 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=40.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76447652008999999999999999999999999999999636
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+++....|||+..||++|++++|.||++.++++...+|+..+.+
T Consensus 216 qG~LE~SNVd~~~Em~~mI~~qR~ye~n~K~i~t~De~l~~~~n 259 (261)
T PRK12693 216 QGFLETSNVNVVEELVNMITGQRAYEMNSKAISTADQMLQYVNQ 259 (261)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 38565444669999999999999999997899999999999986
No 34
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]
Probab=99.61 E-value=6.3e-15 Score=98.70 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=39.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76447652008999999999999999999999999999999636
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
++++...|||+.+||++|++++|+||++.++++...+|+..+.+
T Consensus 219 QG~lE~SNVn~v~EMt~mI~aqRayE~nsK~i~~~D~m~~~~~n 262 (265)
T COG4786 219 QGFLEASNVNVVEEMTDMIEAQRAYEANSKVIQTADEMLGKANN 262 (265)
T ss_pred ECCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64121205679999999999999999887886658999999986
No 35
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional
Probab=99.61 E-value=1.5e-14 Score=96.65 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=39.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76447652008999999999999999999999999999999636
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+++....|||+.+||++|++++|.||++.++++...+|+..++.
T Consensus 217 qG~LE~SNVn~~~Emv~mI~~qRaye~n~K~i~~~De~~~~~~n 260 (263)
T PRK12636 217 SGALEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEILQELVN 260 (263)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 38476134759999999999999999998899999999999997
No 36
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.61 E-value=4.7e-15 Score=99.36 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=40.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76447652008999999999999999999999999999999636
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+++..+.|||+..||++|++++|.||++.++++...+|+..++.
T Consensus 207 qG~LE~SNVn~~~EM~~mI~~qRafe~~~k~i~t~De~~~~a~n 250 (255)
T PRK12818 207 QNSLEKSNVNVTNEMVNMMTTMRSFETNQKIVQSIDETLGKAVN 250 (255)
T ss_pred ECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 26410012689999999999999999999999999999999999
No 37
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.61 E-value=9.2e-15 Score=97.81 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=40.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76447652008999999999999999999999999999999636
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+++....|||+.+||++|++++|.||++.++++...+|+.++++
T Consensus 216 qG~LE~SNVd~~~Emv~mI~~qRaye~~~k~i~t~De~l~~~~q 259 (260)
T PRK12694 216 QGYVEASNVNVVEELVNMIQTQRAYEINSKAVTTSDQMLQRLTQ 259 (260)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 48675214639999999999999999998899999999999866
No 38
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.60 E-value=1.6e-14 Score=96.58 Aligned_cols=44 Identities=20% Similarity=0.195 Sum_probs=39.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76447652008999999999999999999999999999999636
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+++....|||+.+||++|++++|.||++.++++...+|+..++.
T Consensus 218 qG~LE~SNV~~~~EMv~mI~~qR~fe~~~K~i~t~De~~~~~~n 261 (264)
T PRK12816 218 QGFLEMSNVSIVEEMVTMIVAQRAYEINSKAIQTSDNMLGTANN 261 (264)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 28476223659999999999999999999999999999999986
No 39
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.58 E-value=2.1e-14 Score=95.89 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=39.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76447652008999999999999999999999999999999636
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+++....|||+.+||++|++++|.||++.++++...+|+.++-+
T Consensus 216 qG~LE~SNVd~~~EMv~mI~~qRafe~n~k~i~~~Dem~~~~~~ 259 (262)
T PRK12692 216 QGYLESSNVDPVKEITELISAQRAFEMNSKVIQAADEMAGTVSK 259 (262)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 17610355659999999999999999999999999999999997
No 40
>TIGR01396 FlgB flagellar basal-body rod protein FlgB; InterPro: IPR006300 Many bacterial species swim actively by means of flagella. The flagella organelle is made of three parts: the basal body, the hook and the filament. The basal body consists of four rings (L,P,S, and M) mounted on a central rod . In Salmonella typhimurium and related organisms the rod has been shown to consist of four different, yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB, flgC, and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. These sequences represent FlgB, one of several components of bacterial flagella. FlgB is part of the basal body.; GO: 0019861 flagellum.
Probab=99.57 E-value=1.4e-14 Score=96.86 Aligned_cols=122 Identities=29% Similarity=0.370 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC--------CCCC--CCCCCCCCCCCCCC
Q ss_conf 4899999999999999999996310013777653322105676654432113--------4665--11345666555555
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMAR--------THET--HLKESDSSGLHWNA 74 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~~~~--------~~~~--~~~~~~~~~~~~~~ 74 (130)
..|.+..+++++...|+++++.||||++||||+++++ .|+..+.+...... +... |+..... .....
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~-~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 79 (134)
T TIGR01396 3 RALGLLQKALDLRSLRQEVLANNIANADTPGYKAKDL-SFEAELKKALDKERDSNLTLALTDTRPRHLNAEGS--LGYLL 79 (134)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHC-CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCC
T ss_conf 1044677776577776666654310035665310110-27888888764100000000013554210121000--01222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7677776588776447652008999999999999999999999999999999636
Q gi|254780381|r 75 HVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 75 ~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.......+.......|||+||++.|+.++.++++.|++.+..++..+..+..+|+
T Consensus 80 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (134)
T TIGR01396 80 VEPSLLLDLPTQLKNDGNNVDLDSEMAELAKNSLLYQALLSFLNGKFKGLNSVLR 134 (134)
T ss_pred CCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 3320000122100135651003577888776567899999987655444554319
No 41
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.54 E-value=9.6e-14 Score=92.39 Aligned_cols=43 Identities=7% Similarity=0.142 Sum_probs=39.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7644765200899999999999999999999999999999963
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVV 128 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al 128 (130)
++.....|||+..||++|++++|.||++.++++...+|+.+++
T Consensus 210 qG~LE~SNV~~~~Em~~mI~~qRafe~~~K~i~t~Dem~~ka~ 252 (257)
T PRK12819 210 NGMLENSNVDMTKEMADLMTNQRMIQASQRVMTSFDKIYEKEA 252 (257)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0651000366999999999999999999899899999999998
No 42
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.53 E-value=5.7e-14 Score=93.60 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=39.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76447652008999999999999999999999999999999636
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+++....|||+..||++|++++|.||++.++++...+|++.+.+
T Consensus 198 qG~LE~SNV~~~~Em~~mI~~qRaye~n~k~i~~~Dem~~~an~ 241 (246)
T PRK12640 198 SGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADDNAQAANQ 241 (246)
T ss_pred ECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 45153235679999999999999999999999989999999998
No 43
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.51 E-value=1.4e-13 Score=91.46 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=39.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7644765200899999999999999999999999999999963
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVV 128 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al 128 (130)
+++....|||+..||++|++++|.||++.++++...+|+..+-
T Consensus 203 qG~LE~SNVd~~~EM~~lI~~qRaye~n~K~i~~~Dem~~~an 245 (252)
T PRK12641 203 SGMLEDSNVNLEKNMIEMISNARQFEMQMKIISMCDQNTEYAN 245 (252)
T ss_pred ECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2640024466999999999999999999999999999999999
No 44
>TIGR03506 FlgEFG_subfam fagellar hook-basal body proteins. This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog HMMs, TIGR02489, TIGR02490 and TIGR00488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.
Probab=99.36 E-value=2e-12 Score=85.34 Aligned_cols=43 Identities=30% Similarity=0.406 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999999999999999996310013777653322105676654
Q gi|254780381|r 7 FQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQ 50 (130)
Q Consensus 7 f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~ 50 (130)
|-.+.++|.++..|+++||+||||++|||||+... .|++.+.+
T Consensus 3 ly~a~sgm~a~~~~l~visnNlAN~nT~GfK~~~~-~F~~~~~~ 45 (231)
T TIGR03506 3 LYTALSGLNAQSKALDVIANNIANANTTGFKASRA-EFSDLLAQ 45 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC-CHHHHHHC
T ss_conf 89999999999986788888888777644354724-17887523
No 45
>TIGR02490 flgF flagellar basal-body rod protein FlgF; InterPro: IPR012836 Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. This entry contains proteins only from the proteobacteria, and not in the epsilon subdivision (where the architecture of the related FlgE protein differs substantially from other lineages).; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=98.97 E-value=3.1e-09 Score=68.37 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=36.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64476520089999999999999999999999999999996
Q gi|254780381|r 87 VQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHV 127 (130)
Q Consensus 87 ~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~a 127 (130)
+...|.||+..+||++|++.+|+||+-++++++...+=+++
T Consensus 208 g~LEgSNVnav~emv~mI~l~RqFE~Q~Kmm~tA~~na~aa 248 (254)
T TIGR02490 208 GALEGSNVNAVEEMVSMISLSRQFEMQVKMMKTAEDNAQAA 248 (254)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85547775288999999987534677889998787889999
No 46
>PRK05682 flgE flagellar hook protein FlgE; Validated
Probab=98.91 E-value=1.5e-09 Score=70.12 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=38.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47652008999999999999999999999999999999636
Q gi|254780381|r 89 VSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 89 ~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
....||||.+||++|+.+||.||||.++|....+||+.+|.
T Consensus 372 LE~SNVDla~E~t~mI~~QRaYqANskvItTsDemLq~lin 412 (414)
T PRK05682 372 LESSNVDLTTELVDMIVAQRNYQANAKTIKTQDQLLQTLVN 412 (414)
T ss_pred EEHHCCCHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHH
T ss_conf 05001779999999999987746740345619999999972
No 47
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.84 E-value=3.1e-09 Score=68.34 Aligned_cols=42 Identities=33% Similarity=0.372 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 960148999999999999999999963100137776533221
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDIS 42 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~ 42 (130)
|+.++.|.++.++|.+.+..++|+++||||++||||.|+.+.
T Consensus 1 Msl~s~lnia~sgL~a~Q~al~vtg~NIANanT~GYsRQ~v~ 42 (482)
T PRK07521 1 MSLSSALNTAQSGLTATSRQTSVVSRNIANALTPGYSRRTAS 42 (482)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 976789999999999999999988563530799882413778
No 48
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.84 E-value=2.5e-09 Score=68.86 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 6014899999999999999999996310013777653322105676
Q gi|254780381|r 2 QPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETI 47 (130)
Q Consensus 2 ~~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~ 47 (130)
+.+..|.++.++|.+.+.+++|+++|||||+||||+++.+. |++.
T Consensus 3 s~f~~Lnia~SGL~a~Q~~l~vt~~NIANanT~GYsRq~v~-~~~~ 47 (500)
T PRK07739 3 STFMGLETARRGLFAQQAALYVTGHNIANANTPGYTRQRVN-LAAT 47 (500)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE-EECC
T ss_conf 40535999999999999999999775732799980520567-6434
No 49
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.71 E-value=5.8e-08 Score=61.57 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 1489999999999999999999631001377765332210567
Q gi|254780381|r 4 ITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFET 46 (130)
Q Consensus 4 ~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~ 46 (130)
|+++.++.++|.+.+.-.+|+++|||||+||||.|+.+. |..
T Consensus 1 m~~ln~a~SgL~a~q~al~vts~NIANanT~GYsRq~v~-~~~ 42 (456)
T PRK07191 1 MNFIRTAFSGMQAAQAHLNATSMNIANMHTPGYSRQGVE-QSA 42 (456)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE-EEC
T ss_conf 975789999999999999999885743899891503667-642
No 50
>PRK06803 flgE flagellar hook protein FlgE; Validated
Probab=98.69 E-value=1.1e-08 Score=65.53 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=38.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 447652008999999999999999999999999999999636
Q gi|254780381|r 88 QVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 88 ~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+...||||.+|+++|+.+||.||||.++|....+|++..|.
T Consensus 355 aLE~SNVDla~Eft~mI~tQR~yqANskvItT~DemlqelvN 396 (398)
T PRK06803 355 ALEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQQALFN 396 (398)
T ss_pred CEEHHHCHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHH
T ss_conf 463131409999999999987635642488748999999974
No 51
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=98.66 E-value=2e-08 Score=64.03 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 1489999999999999999999631001377765332210567
Q gi|254780381|r 4 ITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFET 46 (130)
Q Consensus 4 ~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~ 46 (130)
|++|.+..++|.+.+.-++|+++||||++||||.|+.++ |..
T Consensus 1 msll~ig~sgL~a~Q~al~vt~~NIAN~nT~GYsRq~v~-~~~ 42 (624)
T PRK12714 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVE-FAT 42 (624)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE-EEC
T ss_conf 971789999999999999988475651689980312778-751
No 52
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=98.58 E-value=4.4e-08 Score=62.25 Aligned_cols=42 Identities=26% Similarity=0.392 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 1489999999999999999999631001377765332210567
Q gi|254780381|r 4 ITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFET 46 (130)
Q Consensus 4 ~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~ 46 (130)
|++|.+..++|.+.+.-.+|+++||||++||||-|+.+. |+.
T Consensus 1 ~sllnig~sgL~a~Q~al~vt~~NIAN~nT~GYsRq~v~-~~~ 42 (649)
T PRK12715 1 MSILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQ-FTP 42 (649)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE-EEC
T ss_conf 976889999999999999887052552689980414666-422
No 53
>pfam00460 Flg_bb_rod Flagella basal body rod protein.
Probab=98.58 E-value=2.8e-08 Score=63.25 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999999999999999631001377765
Q gi|254780381|r 7 FQIASQHANWLSERQKIVSENIANASTPNYR 37 (130)
Q Consensus 7 f~~~~~~l~~~~~R~~via~NIANadTPgYk 37 (130)
|..+.++|++++.|++|||+||||+||||||
T Consensus 1 l~~a~sal~a~~~~l~vianNiAN~nT~G~k 31 (31)
T pfam00460 1 LYTAVSALNAQQIALDVIANNIANANTTGYK 31 (31)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9138876508999999998610245576789
No 54
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.58 E-value=5.7e-08 Score=61.64 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 60148999999999999999999963100137776533221
Q gi|254780381|r 2 QPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDIS 42 (130)
Q Consensus 2 ~~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~ 42 (130)
+.++.|.++.++|.+.+.-.+|+++||||++||||.|+.+.
T Consensus 3 s~fs~Lnia~sGL~a~Q~aL~vtg~NIANanT~GYsRQ~v~ 43 (612)
T PRK08471 3 GIFSSLNTGYTGLQAHQVQVSVTGNNISNASSEFYTRQRVV 43 (612)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 05658999999999999999998676740789981501677
No 55
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.58 E-value=4.8e-08 Score=62.01 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 1489999999999999999999631001377765332210567
Q gi|254780381|r 4 ITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFET 46 (130)
Q Consensus 4 ~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~ 46 (130)
++.|.++.++|.+.+.-.+|+++||||++||||.++.+. +..
T Consensus 3 ~S~~n~a~SGl~A~q~al~vts~NIANanT~GYsRq~v~-~~~ 44 (431)
T PRK06799 3 LSDYNTPLSGMLAAQMGLQTTQQNLSNIHTPGYVRQMVN-YGS 44 (431)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE-EEC
T ss_conf 424569999999999999988785740799890614722-013
No 56
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=98.57 E-value=4.3e-08 Score=62.29 Aligned_cols=44 Identities=32% Similarity=0.429 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 96014899999999999999999996310013777653322105676
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETI 47 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~ 47 (130)
|+.+-+ .+-++|..+..+|+|||+||||++|||||+.. ..|+..
T Consensus 1 Mdr~iY--tA~sg~~~~~~~~~viaNNLANvnT~GFK~~~-~~~~~~ 44 (209)
T PRK12643 1 MDHAIY--TAMGAARQSLELQAVTANNLANASTPGFRAQL-AAMRAV 44 (209)
T ss_pred CCHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCH-HHHHCC
T ss_conf 926899--99999999999888998887747876443104-534231
No 57
>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion]
Probab=98.57 E-value=3.2e-08 Score=62.97 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 489999999999999999999631001377765332210567665443211
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMA 55 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~~~ 55 (130)
..|...-++|++++.|++||++||||++|.|||+.+. .|.+++.......
T Consensus 3 ~s~~~gvSGm~a~q~~LdvisnNIANanT~GfK~s~~-~F~dm~s~s~~g~ 52 (423)
T COG1749 3 RSFYNGVSGMNAHQFALDVISNNIANANTTGFKRSRA-EFSDMFSQSLVGA 52 (423)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHCCCC
T ss_conf 6776666667776640332023413454521132675-0663201000455
No 58
>PRK12637 flgE flagellar hook protein FlgE; Provisional
Probab=98.57 E-value=3.7e-08 Score=62.65 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=34.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47652008999999999999999999999999999999636
Q gi|254780381|r 89 VSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 89 ~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+...||||.+|+++|+.+||.||||.++|....+||+.+|.
T Consensus 431 LE~SNVDLa~Eft~mIvtQR~yQANSKvItTsDemLqelin 471 (473)
T PRK12637 431 LEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMN 471 (473)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHH
T ss_conf 40244079999999999876501432588758999999970
No 59
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=98.57 E-value=3.9e-08 Score=62.54 Aligned_cols=43 Identities=28% Similarity=0.313 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999999999999999631001377765332210567665443
Q gi|254780381|r 9 IASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF 52 (130)
Q Consensus 9 ~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~ 52 (130)
-.-++|.+++.++.||++||||++|.|||+.++ .|++++....
T Consensus 7 sGVSGL~a~~~~ldvIgNNIANvnT~GfK~sr~-~F~dl~sq~~ 49 (605)
T PRK05841 7 NAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDP-EFKTLFSSHL 49 (605)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC-CHHHHHHHHH
T ss_conf 999999998754423302434167621155535-3787665430
No 60
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.55 E-value=3.5e-07 Score=57.41 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 148999999999999999999963100137776533221
Q gi|254780381|r 4 ITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDIS 42 (130)
Q Consensus 4 ~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~ 42 (130)
-++|.++.++|.+.+...+|+++|||||+||||-|+.|+
T Consensus 2 ss~l~ia~sgL~a~Q~al~vt~~NIaNanT~GYsRq~v~ 40 (547)
T PRK08147 2 SSLINTAMSGLNAAQAALNTVSNNISNYNVAGYTRQTTI 40 (547)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 618999999999999999999775633899980630577
No 61
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.53 E-value=8.4e-08 Score=60.73 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999999999999963100137776533221
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDIS 42 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~ 42 (130)
++|.+..++|.+.+.-++|+++||||++||||-|+.++
T Consensus 3 sll~ig~sgL~a~Q~~l~vtg~NIaN~nT~GYsRq~v~ 40 (649)
T PRK06945 3 SLFNIGVSGLNAAQWGLTTTGHNISNAATPGYSRQRPV 40 (649)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 07899999999999999988575651789880401666
No 62
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway . The amino acid sequences of the hook protein and of the three hook-associated proteins of Salmonella typhimurium have been deduced from the DNA sequences of their structural genes (flgE, flgK, flgL and fliD respectively). These sequences have been compared with each other and with those for the filament protein (flagellin) and four rod proteins. The hook protein was found to be most similar to the distal rod protein (FlgG) and the proximal hook-associated protein (HAP1), which are thought to be attached to the proximal and distal ends of the hook, the similarities being most pronounced near the N- and C-termini. It is thought that the axial proteins may adopt amphipathic alpha-helical conformations at their N- and C-termini. These regions of the filament and hook are believed to be responsible for quaternary interactions between subunits. Interaction between N- and C-terminal alpha-helices may be important in the formation of the axial structures of the flagellum. Although consensus sequences have been noted, no consensus extends to the entire set of axial proteins. Thus the basis for recognition of a protein for export by the flagellum-specific pathway remains to be identified.; GO: 0005198 structural molecule activity, 0009296 flagellum biogenesis, 0009424 flagellin-based flagellum hook.
Probab=98.51 E-value=7.6e-08 Score=60.95 Aligned_cols=38 Identities=29% Similarity=0.374 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999999999999963100137776533221
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDIS 42 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~ 42 (130)
+.|+++.++|.+.+.-..|+++|||||+||||-|+.+.
T Consensus 1 ~~l~~a~~gL~a~q~al~~~~~NIANant~GY~Rq~a~ 38 (495)
T TIGR02492 1 SLLNIAKSGLSASQIALSVTSNNIANANTPGYSRQRAE 38 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
T ss_conf 94789999999999999987436224679896046677
No 63
>PRK08425 flgE flagellar hook protein FlgE; Validated
Probab=98.50 E-value=4.4e-08 Score=62.23 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9999999999999999631001377765332210567665443
Q gi|254780381|r 10 ASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF 52 (130)
Q Consensus 10 ~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~ 52 (130)
.-++|.+++.++.||++||||++|.|||+.++ .|++++.+..
T Consensus 8 GvSGL~a~~~~mdVigNNIANvNTvGfK~sr~-~F~dl~sqt~ 49 (716)
T PRK08425 8 GVSGLQAHQIAMDVEGNNIANVNTTGFKYSRA-SFVDMLSQTK 49 (716)
T ss_pred HHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCC-CHHHHHHHHH
T ss_conf 88889875300000014122056423055555-1888775543
No 64
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.47 E-value=1.5e-07 Score=59.41 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 148999999999999999999963100137776533221
Q gi|254780381|r 4 ITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDIS 42 (130)
Q Consensus 4 ~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~ 42 (130)
.++|.+..++|.+.+.-.+|+++||||++||||.|+.+.
T Consensus 3 s~ll~ig~sgL~a~Q~al~vtg~NIANanT~GYsRq~v~ 41 (626)
T PRK08871 3 SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVI 41 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 678999999999999999987476651699880510565
No 65
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.46 E-value=1.7e-07 Score=59.12 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 601489999999999999999999631001377765332210567
Q gi|254780381|r 2 QPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFET 46 (130)
Q Consensus 2 ~~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~ 46 (130)
+.+..|.+..++|.+.+.-++|+++||||++||||-|+.+. |+.
T Consensus 3 s~F~~L~ig~sgL~a~Q~aL~ttg~NIANvnT~GYsRQ~v~-~~a 46 (628)
T PRK06665 3 STFSGIEIGKRSLFAHKQAMQTTGHNISNASKPGYSRQRVT-MKT 46 (628)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE-EEC
T ss_conf 52426999999999999999988576641799880521766-412
No 66
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=98.43 E-value=2.1e-07 Score=58.65 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999999999999963100137776533221
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDIS 42 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~ 42 (130)
++|.+..++|.+.+.-.+|+++||||++||||.|+.++
T Consensus 2 sll~ig~sgL~a~q~al~vt~~NIaN~nT~GYsRq~v~ 39 (676)
T PRK05683 2 SLISIGLSGLGASQTALATTGNNIANVDTAGYSRQQAV 39 (676)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 67899999999999999987366641799881401666
No 67
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=98.22 E-value=1.1e-06 Score=54.76 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 960148999999999999999999963100137776533221
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDIS 42 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~ 42 (130)
|+.+++|.++.++|.+...-.+|.++||+|++||||-|+.|+
T Consensus 1 ms~~s~lnta~sgl~a~q~~l~vtg~NIsNant~gYsRQrv~ 42 (552)
T COG1256 1 MSLFSLLNTALSGLNAAQAALDVTGHNISNANTPGYSRQRVI 42 (552)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHH
T ss_conf 952677999999999999999875613356899986302104
No 68
>PRK05682 flgE flagellar hook protein FlgE; Validated
Probab=98.20 E-value=1.2e-06 Score=54.51 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999999999999963100137776533221056766544
Q gi|254780381|r 8 QIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQN 51 (130)
Q Consensus 8 ~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~ 51 (130)
-..-++|.+++.|++||++||||++|||||+.++ .|++.+.+.
T Consensus 4 ~tgvSGl~a~~~~l~visnNiAN~nT~GyK~~~~-~F~~~~~~~ 46 (414)
T PRK05682 4 NTGVSGLNAASNDLDVIGNNIANANTTGFKESRA-EFADLYANS 46 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCC-CHHHHHHHC
T ss_conf 8999999999860167767787677530087755-167865212
No 69
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=98.16 E-value=8.6e-06 Score=50.03 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=34.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76447652008999999999999999999999999999999
Q gi|254780381|r 86 GVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMH 126 (130)
Q Consensus 86 ~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~ 126 (130)
.+...+.||+...||++|.+++|+||+-+.+++.....-.+
T Consensus 203 sG~LE~SNVnav~~Mt~mI~~aRqfEmqmKmist~d~na~~ 243 (251)
T COG4787 203 SGALEGSNVNAVEEMTDMISLARQFEMQMKMISTADDNAGA 243 (251)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 14134565337999999999888889889887542100688
No 70
>PRK12637 flgE flagellar hook protein FlgE; Provisional
Probab=98.04 E-value=2.8e-06 Score=52.66 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 999999999999999999963100137776533221056766544
Q gi|254780381|r 7 FQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQN 51 (130)
Q Consensus 7 f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~ 51 (130)
|-..-++|.+++.|+.||++||||++|+|||+.+. .|++.+...
T Consensus 3 ~~~GvsGl~a~~~~l~vi~nNiAN~~T~gfK~~~~-~F~~~~~~~ 46 (473)
T PRK12637 3 FGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAA-SFADVYASS 46 (473)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC-CHHHHHCCC
T ss_conf 77899999998855325514767377600085667-166754558
No 71
>PRK06803 flgE flagellar hook protein FlgE; Validated
Probab=98.02 E-value=3.8e-06 Score=51.92 Aligned_cols=44 Identities=32% Similarity=0.463 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 999999999999999999963100137776533221056766544
Q gi|254780381|r 7 FQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQN 51 (130)
Q Consensus 7 f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~ 51 (130)
|...-++|.+++.+++||++||||++|+|||+.++ .|++++...
T Consensus 3 ~~~gvSGl~a~~~~ldvIsNNIANvnT~GfK~s~~-~F~dl~~~~ 46 (398)
T PRK06803 3 FNIALSGLNATTQQLNTISNNIANSSTKGFKGSRT-EFASIYNGG 46 (398)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHCCCHHCCCCCC-CHHHHHCCC
T ss_conf 89999999998856436635777578531075620-546754766
No 72
>PRK08425 flgE flagellar hook protein FlgE; Validated
Probab=98.00 E-value=3.7e-06 Score=51.96 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=39.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6447652008999999999999999999999999999999636
Q gi|254780381|r 87 VQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 87 ~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
..+...||||.+|+++|+.+||.||||.++|....+|++.+|+
T Consensus 671 ~sLE~SNVDLs~Eft~mI~tQRgyQANsKvITTsDemLqelin 713 (716)
T PRK08425 671 SKLEMSNVDLSRSLTQLIVVQRGFQANSKTITTSDQMLNTLLQ 713 (716)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEHHHHHHHHHH
T ss_conf 7623312159999999999766420304378618999999986
No 73
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=97.99 E-value=2.2e-06 Score=53.17 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=39.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 447652008999999999999999999999999999999636
Q gi|254780381|r 88 QVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 88 ~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+...||||.+|+++|+.+||.||||.++|....+|++.+|.
T Consensus 561 aLE~SNVDLa~Eft~mIvtQR~yQANsKvITTsD~mLqelin 602 (605)
T PRK05841 561 YLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAIS 602 (605)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCHHHCEEEEEHHHHHHHHHH
T ss_conf 620133058999999999876520541278768999999986
No 74
>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=97.96 E-value=1.7e-05 Score=48.46 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 52008999999999999999999999999999999636
Q gi|254780381|r 92 NTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 92 n~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.|||+++||++|++++|+|+++.++++....|+.++|.
T Consensus 1 SnV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~ 38 (39)
T pfam06429 1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLN 38 (39)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98878999999999999989999999889999999876
No 75
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.71 E-value=6.9e-05 Score=45.20 Aligned_cols=39 Identities=13% Similarity=0.325 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 652008999999999999999999999999999999636
Q gi|254780381|r 91 GNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 91 gn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
-.+||+|+||++|+.-|+.|+|+.++|....+||.+.|.
T Consensus 455 ~SGVnlDEE~~nLi~~Q~aYqAnAkvItt~demldtLlN 493 (500)
T PRK07739 455 VSAVSLDEEMTNMIQFQHAYNAAARMITAIDEMLDKIIN 493 (500)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 129669999999999999999999999999999999998
No 76
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway . The amino acid sequences of the hook protein and of the three hook-associated proteins of Salmonella typhimurium have been deduced from the DNA sequences of their structural genes (flgE, flgK, flgL and fliD respectively). These sequences have been compared with each other and with those for the filament protein (flagellin) and four rod proteins. The hook protein was found to be most similar to the distal rod protein (FlgG) and the proximal hook-associated protein (HAP1), which are thought to be attached to the proximal and distal ends of the hook, the similarities being most pronounced near the N- and C-termini. It is thought that the axial proteins may adopt amphipathic alpha-helical conformations at their N- and C-termini. These regions of the filament and hook are believed to be responsible for quaternary interactions between subunits. Interaction between N- and C-terminal alpha-helices may be important in the formation of the axial structures of the flagellum. Although consensus sequences have been noted, no consensus extends to the entire set of axial proteins. Thus the basis for recognition of a protein for export by the flagellum-specific pathway remains to be identified.; GO: 0005198 structural molecule activity, 0009296 flagellum biogenesis, 0009424 flagellin-based flagellum hook.
Probab=97.68 E-value=9e-05 Score=44.60 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47652008999999999999999999999999999999636
Q gi|254780381|r 89 VSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 89 ~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
..-.+|+||+||++|++=|+.|+|+.++|...-+||.+.|.
T Consensus 454 ~s~sGVs~DEE~~~l~~~Q~~Y~A~ak~i~t~d~m~d~LL~ 494 (495)
T TIGR02492 454 SSISGVSLDEEMANLIQYQKAYQASAKVISTVDEMLDSLLN 494 (495)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76416679999999999998899999999999999999963
No 77
>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion]
Probab=97.57 E-value=2.1e-05 Score=48.01 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=39.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6447652008999999999999999999999999999999636
Q gi|254780381|r 87 VQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 87 ~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
+.+...||||.+|.++|+.+||.||||.++|+...+||+..|.
T Consensus 378 gaLE~SNVDls~EltnmIvaQR~YqANsK~i~T~D~mlq~lvn 420 (423)
T COG1749 378 GALEMSNVDLAKELTNLIVAQRGYQANAKVITTSDQMLQTLVN 420 (423)
T ss_pred CCCEECCCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHH
T ss_conf 6332112118999999888665044455068605899999986
No 78
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.48 E-value=0.00025 Score=42.27 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 652008999999999999999999999999999999636
Q gi|254780381|r 91 GNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 91 gn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
..+|++|+||++|++-|+.|+|+.++|....+||.+.|.
T Consensus 441 vSGVnlDEE~~nLi~~Q~aY~AsArvitt~demldtLln 479 (482)
T PRK07521 441 ATGVDTDDEMALLLDLEQSYAASAKVISTVDEMLDSLLR 479 (482)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 138059999999999999999999999999999999998
No 79
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.41 E-value=0.00033 Score=41.59 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7652008999999999999999999999999999999636
Q gi|254780381|r 90 SGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 90 dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.-.+|++|+||++|++=++.|+|+.++|....+||.+.|.
T Consensus 390 svsGVnlDEE~~nLl~~QqaY~A~AkvIst~demldtLLn 429 (431)
T PRK06799 390 SLEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFS 429 (431)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2538388899999999999999999999999999999984
No 80
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.37 E-value=0.0004 Score=41.15 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7652008999999999999999999999999999999636
Q gi|254780381|r 90 SGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 90 dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.-.+|++|+||++|++=++.|+|+.++|....+||.+.|.
T Consensus 415 svsGVnlDEE~~nLi~~Q~aY~AsArvitt~demldtLln 454 (456)
T PRK07191 415 SFSGVNNDEEAMNLMEYQRAYQSNMKVIATGDKLFSDLLA 454 (456)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4658178999999999999999999999999999999995
No 81
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.37 E-value=0.00041 Score=41.07 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47652008999999999999999999999999999999636
Q gi|254780381|r 89 VSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 89 ~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
..-.+|+||+||++|++=|.+|+|+.++|....+||.+.|.
T Consensus 569 ~svSGVnlDEE~~nLik~QqaY~AsArvista~em~dtLL~ 609 (612)
T PRK08471 569 QSISGVSTDEELTNLIKFQSSYGAAAKIITTVDQMLDTLLG 609 (612)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85106039999999999999999999999999999999982
No 82
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.36 E-value=0.00044 Score=40.94 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 76520089999999999999999999999999999996369
Q gi|254780381|r 90 SGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 90 dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
.-..|+||+||++|++=|.+|+|+.++|....+||.+.|..
T Consensus 635 SvSGVnlDEE~anLikfQqaY~AaArvItt~deMlDtLln~ 675 (676)
T PRK05683 635 SLSGVSLDEEAANLIKFQQYYTASSQIIKAAQETFDTLINA 675 (676)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 56250399999999999999999999999999999999734
No 83
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.32 E-value=0.00052 Score=40.53 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7652008999999999999999999999999999999636
Q gi|254780381|r 90 SGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 90 dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.-.+|++|+||++|++=|+.|+|+.+++....+||.+.|.
T Consensus 506 svSGVnlDEE~~nLi~~Q~aY~AsArvist~demldtLln 545 (547)
T PRK08147 506 SVSGVNLDEEYGNLQRFQQYYLANAQVLQTASTLFDALLN 545 (547)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4317669999999999999999999999999999999877
No 84
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.32 E-value=0.00047 Score=40.76 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 652008999999999999999999999999999999636
Q gi|254780381|r 91 GNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 91 gn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
-..|+||+||++|++=|.+|+|+.++|....+||.+.|.
T Consensus 586 vSGVnlDEE~anLikfQqaY~AsArvIst~dem~dtLln 624 (628)
T PRK06665 586 VSGVNKDEELANMIEFQQSYNASAKFINVSNELLDTIIN 624 (628)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 636029999999999999999999999999999999987
No 85
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=97.31 E-value=0.00052 Score=40.51 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47652008999999999999999999999999999999636
Q gi|254780381|r 89 VSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 89 ~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
..-..|+||+||++|++=|..|+|+.++|....+||.+.|.
T Consensus 581 ~SvSGVnlDEE~anLikfQqaY~AaArvIttadem~dtLL~ 621 (624)
T PRK12714 581 DSISGVNLDEEAADMLKLQQAYQAAAQMISTADTMFQAILG 621 (624)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 70306168999999999999999999999999999999998
No 86
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=97.31 E-value=0.00053 Score=40.50 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=36.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47652008999999999999999999999999999999636
Q gi|254780381|r 89 VSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 89 ~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
..-..|+||+||++|++=|..|+|+.++|....+||.+.|.
T Consensus 606 ~SvSGVNLDEE~aNLi~fQqaY~AsArvIsta~emfDtLLn 646 (649)
T PRK12715 606 DSKSGVNLDEEGANLLVFQQAYQAAGKLMEISNQIMNLLFD 646 (649)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 60315168899999999999999999999999999999998
No 87
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.30 E-value=0.00054 Score=40.44 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47652008999999999999999999999999999999636
Q gi|254780381|r 89 VSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 89 ~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
..-..|+||+||++|++=|.+|+|+.++|....+||.+.|.
T Consensus 607 ~SvSGVnlDEEl~nLikyQqaY~AaArvItt~deMldtLl~ 647 (649)
T PRK06945 607 QSVSGVNLDEEAANLLQYQQLYQANAKVIQTASTLFDTLLG 647 (649)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 74406139999999999999999999999999999999995
No 88
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.26 E-value=0.00065 Score=40.01 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7652008999999999999999999999999999999636
Q gi|254780381|r 90 SGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 90 dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.-..|+||+||++|++=|.+|+|+.++|....+||.+.|.
T Consensus 585 svSGVnlDEEl~nLikyQqaY~AaArvItt~demldtLln 624 (626)
T PRK08871 585 SISGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILQ 624 (626)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 0115039999999999999999999999999999999877
No 89
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=97.17 E-value=0.00088 Score=39.33 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47652008999999999999999999999999999999636
Q gi|254780381|r 89 VSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 89 ~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
..-..|+||+||++|++=|..|+|+.++|.....||.+.|-
T Consensus 509 ~S~SGVnlDEE~anLi~~Qq~Y~AsAKvI~tvd~m~dtLln 549 (552)
T COG1256 509 QSISGVNLDEEMANLIQFQQAYQASAKVIQTVDEMLDTLLN 549 (552)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 60137787799999999999999999999999999999986
No 90
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=96.88 E-value=0.00015 Score=43.43 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=19.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 765200899999999999999999999999999999963
Q gi|254780381|r 90 SGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVV 128 (130)
Q Consensus 90 dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al 128 (130)
.-.||||.+=+.+|+-.||-||||.+.+.++.+||++.|
T Consensus 835 EMSNVDLSRsLT~LIvvQRGfQANSKtvtTSDQiL~TLl 873 (877)
T TIGR02489 835 EMSNVDLSRSLTQLIVVQRGFQANSKTVTTSDQILNTLL 873 (877)
T ss_pred CCCCHHHHHHHHHEEEEECCEECCCCCCCHHHHHHHHHH
T ss_conf 001004666430127765141145640301578999997
No 91
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=92.91 E-value=0.012 Score=33.35 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 999999999999996310013777653322105676654432113
Q gi|254780381|r 12 QHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMAR 56 (130)
Q Consensus 12 ~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~~~~ 56 (130)
++|+|++.=++|=++||||+||.|||=..- .|.++|.+....++
T Consensus 10 sgmQAHQvAlDVEgNNIaNVNTtGFKYSRA-~F~dMlSQ~~~IAT 53 (877)
T TIGR02489 10 SGMQAHQVALDVEGNNIANVNTTGFKYSRA-DFGDMLSQVKKIAT 53 (877)
T ss_pred HHHHHHEEEEECCCCCCCCCCCCCEEEEEC-CHHHHHHHHHEEEE
T ss_conf 011020133310446403313455004304-31124244000230
No 92
>PRK12804 flagellin; Provisional
Probab=87.92 E-value=1.2 Score=22.57 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 52008999999999999999999999999999999636
Q gi|254780381|r 92 NTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 92 n~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
-.||+.+|++++...++.||+.+.++...-.+-+.+|+
T Consensus 267 ~DaD~A~e~~~l~~~qi~~Qaa~a~laqAN~~~q~~L~ 304 (307)
T PRK12804 267 RDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQ 304 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 60069999999999999999999999998266899998
No 93
>PRK12805 flagellin; Provisional
Probab=86.65 E-value=1.3 Score=22.42 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2008999999999999999999999999999999636
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+|+.+|++++.+.++.||+.+.++...-..=+.+|+
T Consensus 247 DaD~A~e~~~l~k~qil~Qaa~amlaQAN~~pq~vL~ 283 (287)
T PRK12805 247 DADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQ 283 (287)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 2219999999999999999999999998327799998
No 94
>PRK12806 flagellin; Provisional
Probab=86.27 E-value=1.2 Score=22.71 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2008999999999999999999999999999999636
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+|+.+||+++.++++.-|+.+.++...-+.=+.+|+
T Consensus 435 DaDmA~E~s~ltk~qILqQA~~amLAQANq~pQ~VL~ 471 (475)
T PRK12806 435 DADYAAEMASLTKNQILQQAGTAMLAQANSLPQSVLS 471 (475)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 0229999999999999999999999996507689998
No 95
>PRK06819 flagellin; Validated
Probab=85.78 E-value=1.2 Score=22.60 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2008999999999999999999999999999999636
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+|+.+||+++.+.++..|+.+.++...-++=+.+|+
T Consensus 332 DaD~A~E~t~l~k~qil~Qa~~amLaqANq~~q~vL~ 368 (371)
T PRK06819 332 DADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLS 368 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 3039999999999999999999999997707789998
No 96
>PRK12807 flagellin; Provisional
Probab=85.51 E-value=2 Score=21.39 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2008999999999999999999999999999999636
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+|+.+|++++...++.||+.+.++...-..=+.+|+
T Consensus 248 DaD~A~e~~~l~~~qil~Qaa~a~lsqAN~~~q~vL~ 284 (287)
T PRK12807 248 DADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSK 284 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1049999999999999999999999998467899998
No 97
>PRK12808 flagellin; Provisional
Probab=85.26 E-value=1.3 Score=22.38 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2008999999999999999999999999999999636
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+|+.+||++|.++++.-||.+.++...-+.=+.+|+
T Consensus 421 DaDmA~E~a~ltk~qILqQAgtamLAQANq~pq~vL~ 457 (460)
T PRK12808 421 DADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSK 457 (460)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 0659999999999999999999999996517478998
No 98
>PRK12584 flagellin A; Reviewed
Probab=84.92 E-value=1.5 Score=22.12 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2008999999999999999999999999999999636
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+|+..||+++.++++.-||.+.++-..-+.=+.+|+
T Consensus 471 DaD~A~Ema~~tk~qIL~QAgtamLAQANq~pQ~VL~ 507 (510)
T PRK12584 471 DVDFAEESANFNKNNILAQSGSYAMSQANTVQQNILR 507 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 5308999999999999999999999986176688986
No 99
>PRK12802 flagellin; Provisional
Probab=84.55 E-value=2.5 Score=20.94 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65200899999999999999999999999999999963
Q gi|254780381|r 91 GNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVV 128 (130)
Q Consensus 91 gn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al 128 (130)
--.||+..|++++...++.||+.+.++...-.+=+.+|
T Consensus 241 i~DaD~A~e~~~l~~~qi~~Qaa~a~laqANq~~q~vl 278 (282)
T PRK12802 241 VQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVL 278 (282)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66005999999999999999999999999967689999
No 100
>PRK13589 flagellin; Provisional
Probab=84.53 E-value=1.6 Score=21.95 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2008999999999999999999999999999999636
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+|+..||++|.++|+.-||.+.++-..-+.=+.+|+
T Consensus 534 DaD~A~Ema~~TK~QILqQAgtamLAQANq~pQ~VL~ 570 (573)
T PRK13589 534 DVDFAAESANFSKYNILAQSGSYAMSQANAVQQNVLK 570 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 3529999999999999999999999987467488997
No 101
>PRK13588 flagellin B; Provisional
Probab=84.45 E-value=1.7 Score=21.85 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2008999999999999999999999999999999636
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+|+..||+++.++++.-||.+.++-..-+.=+.+|+
T Consensus 475 DaDmA~Ema~lTk~qIL~QAg~amLAQANq~pQ~VL~ 511 (514)
T PRK13588 475 DVDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLR 511 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 5219999999999999999999999998256688998
No 102
>PRK08869 flagellin; Reviewed
Probab=84.34 E-value=1.9 Score=21.55 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2008999999999999999999999999999999636
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+|+.+||+++.+.++..|+.+.++...-..=+.+|+
T Consensus 338 DaD~A~E~t~l~k~qil~Qa~~amLaqANq~~q~vL~ 374 (377)
T PRK08869 338 DTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALS 374 (377)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 1319999999999999999999999997317679998
No 103
>pfam00700 Flagellin_C Bacterial flagellin C-terminal helical region. Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.
Probab=83.67 E-value=2.3 Score=21.06 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2008999999999999999999999999999
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSM 123 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~ 123 (130)
.+|+.+|++++.+.+..||+..+++....++
T Consensus 48 D~D~Aee~t~l~~~qil~qas~a~~aqanql 78 (84)
T pfam00700 48 DVDPAEASTRVTKLQILLQASYALTAQANQL 78 (84)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6509999999999999999999999998678
No 104
>PRK12803 flagellin; Provisional
Probab=83.43 E-value=1.8 Score=21.73 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2008999999999999999999999999999999636
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+|+..||+++.+.++..|+.+.++...-..=+.+|+
T Consensus 296 DaD~A~E~~~ltk~qil~Qa~~amLaQAN~~pq~vL~ 332 (335)
T PRK12803 296 DATMTDEVVASTTNSILTQSAMAMIAQANQVPQYVLS 332 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 3059999999999999999999999997617689998
No 105
>PRK08411 flagellin; Reviewed
Probab=83.42 E-value=1.9 Score=21.59 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2008999999999999999999999999999999636
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+|+..||++|.++|+.-||-+.++-..-+.=+.+|+
T Consensus 534 DaDfA~Ema~lTK~qILqQAgtamLAQANq~pQ~VL~ 570 (573)
T PRK08411 534 DVDFASESANYSKANILAQSGSYAMAQANSVQQNVLR 570 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 3529999999989999999999999987367488997
No 106
>PRK08026 flagellin; Validated
Probab=83.10 E-value=1.9 Score=21.55 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 200899999999999999999999999999999963
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVV 128 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al 128 (130)
.+|+..||+++.++++.-||.+.++...-+.=+.+|
T Consensus 526 DaD~A~E~a~ltk~qILqQAgtamLAQANq~pQ~VL 561 (566)
T PRK08026 526 DADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVL 561 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 540999999999999999999999999712778999
No 107
>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional
Probab=78.77 E-value=3.1 Score=20.42 Aligned_cols=30 Identities=7% Similarity=0.035 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 200899999999999999999999999999
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNS 122 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~ 122 (130)
.+|+.+||+++.+.++.|||..+++.+..+
T Consensus 487 D~D~Ae~~t~lt~~qil~qAa~s~~aqi~q 516 (523)
T PRK12717 487 DSDPAEATTRLTLQQTMLEASQQAFVKISQ 516 (523)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 303999999999999999999999999857
No 108
>PRK08412 flgL flagellar hook-associated protein FlgL; Validated
Probab=76.98 E-value=4 Score=19.85 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5200899999999999999999999999999
Q gi|254780381|r 92 NTVGITNELYKSGHIKYLYELNTKLIKKLNS 122 (130)
Q Consensus 92 n~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~ 122 (130)
-..|+.+||+++..-++.|||.++...+--+
T Consensus 740 ~D~D~AE~mm~ft~l~~~yQAmLas~~kI~Q 770 (777)
T PRK08412 740 TGTDMAETYNKFSNLTNNYNAVLASTNKINQ 770 (777)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2607999999999999999999998531134
No 109
>PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=74.67 E-value=4.8 Score=19.40 Aligned_cols=31 Identities=6% Similarity=0.113 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2008999999999999999999999999999
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSM 123 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~ 123 (130)
.+|+.+|+++|.+.+..|||..+++.+-.++
T Consensus 367 DaD~ae~~t~l~~~q~~~qAa~~~~aqi~q~ 397 (403)
T PRK08870 367 DLDYASAISEFEKQQAALQAAQQAFSKVQSL 397 (403)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5479999999999999999999999988345
No 110
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=74.41 E-value=6.2 Score=18.83 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5200899999999999999999999999999999963
Q gi|254780381|r 92 NTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVV 128 (130)
Q Consensus 92 n~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al 128 (130)
-.||+.+|+.++...++.+|+.++++.....+=...+
T Consensus 320 ~D~D~aee~t~l~~~q~~~Qas~~~laqan~~s~~~l 356 (360)
T COG1344 320 VDVDMAEESTELTKLQILQQASLQALAQANQLSLLVL 356 (360)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0776999999999999999999999999986028889
No 111
>PRK12687 flagellin; Reviewed
Probab=66.56 E-value=9.4 Score=17.86 Aligned_cols=36 Identities=8% Similarity=0.086 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 200899999999999999999999999999999963
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVV 128 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al 128 (130)
..|+..|+++|.+.|+.-|+.++++...-..=+.+|
T Consensus 272 DADmA~Esa~l~k~QilqQag~amLaqANq~pQ~vL 307 (311)
T PRK12687 272 DADMNAESTRLQALQTQQQLGIQALSIANQGSQSIL 307 (311)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 665999999999999999999999999845759999
No 112
>PRK12729 fliE flagellar hook-basal body protein FliE; Provisional
Probab=61.35 E-value=12 Score=17.31 Aligned_cols=42 Identities=7% Similarity=0.101 Sum_probs=36.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 644765200899999999999999999999999999999963
Q gi|254780381|r 87 VQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVV 128 (130)
Q Consensus 87 ~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al 128 (130)
...+.|+||+-+-|+.+.++++.-+...++.++...-++-.+
T Consensus 83 mV~dpnSVDlHDVmIA~eKAsmsL~~T~~IrnKvVeAYqEIt 124 (127)
T PRK12729 83 MVFDPNSVDAHDVMIASEKARVALTFTKTIADGVVRAYRELT 124 (127)
T ss_pred HHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 733987452999999998603059999999999999999987
No 113
>PRK07701 flgL flagellar hook-associated protein FlgL; Validated
Probab=61.03 E-value=12 Score=17.28 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20089999999999999999999999999
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLN 121 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~ 121 (130)
.||+.+|++++...+..|||..+++.+-.
T Consensus 264 D~D~a~a~~~l~~~q~~~qAa~~~~a~i~ 292 (301)
T PRK07701 264 DVDLAEVITDLKTQENVYRAALAVGARII 292 (301)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54599999999999999999999999883
No 114
>pfam02049 FliE Flagellar hook-basal body complex protein FliE.
Probab=57.87 E-value=14 Score=16.98 Aligned_cols=42 Identities=12% Similarity=0.243 Sum_probs=36.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 447652008999999999999999999999999999999636
Q gi|254780381|r 88 QVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 88 ~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
...|..+|+.+=|+.+.++.+.+++.+++-++-.+-|+-..|
T Consensus 53 ~~~G~~~~l~~vmia~~kA~~s~q~~~qVRnK~v~AYqeimr 94 (97)
T pfam02049 53 FATGKSVDLHEVMIAVQKASLSFQATVQVRNKLVEAYQEIMR 94 (97)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 984898879999999999999999999999999999999981
No 115
>PRK12728 fliE flagellar hook-basal body protein FliE; Provisional
Probab=57.16 E-value=14 Score=16.91 Aligned_cols=42 Identities=12% Similarity=0.251 Sum_probs=36.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 447652008999999999999999999999999999999636
Q gi|254780381|r 88 QVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 88 ~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
...|..+||.+=|+.+-++.+.+++.+++=++-.+-|+...|
T Consensus 53 ~~~G~~~~lhevmia~qkA~ls~q~~~qVRNK~v~AYqEIMr 94 (97)
T PRK12728 53 LIKGEDVDLHDVMIAAQKASISLQLAVQVRNKVVEAYQEIMR 94 (97)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 984898889999999999999999999999999999999982
No 116
>TIGR00205 fliE flagellar hook-basal body complex protein (FliE); InterPro: IPR001624 Four genes from the major Bacillus subtilis chemotaxis locus have been shown to encode proteins that are similar to the Salmonella typhimurium FlgB, FlgC, FlgG and FliF proteins; a further gene product is similar to the Escherichia coli FliE protein . All of these proteins are thought to form part of the hook-basal body complex of the bacterial flagella . The FlgB, FlgC and FlgG proteins are components of the proximal and distal rods; FliF forms the M-ring that anchors the rod assembly to the membrane; but the role of FliE has not yet been determined . The similarity between the proteins in these two organisms suggests that the structures of the M-ring and the rod may be similar . Nevertheless, some differences in size and amino acid composition between some of the homologues suggest the basal body proteins may be organised slightly differently within B. subtilis . From gel electrophoresis and autoradiography of 35S-labelled S. typhimurium hook-basal body complexes and the deduced number of sulphur-containing residues in FliE, the stoichiometry of the protein in the hook-basal body complex has been estimated to be about nine subunits . FliE does not undergo cleavage of a signal peptide, nor does it show any similarity to the axial components like the rod or hook proteins, which are thought to be exported by the flagellum-specific export pathway . On this evidence, it has been suggested that FliE may be in the vicinity of the MS ring, perhaps acting as an adaptor protein between ring and rod substructures .; GO: 0003774 motor activity, 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 flagellin-based flagellum.
Probab=52.20 E-value=17 Score=16.46 Aligned_cols=91 Identities=15% Similarity=0.191 Sum_probs=56.4
Q ss_pred HHHHHHHH-HHCC-----CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 99999963-1001-----377765332210567665443211346651134566655555576777765887764476-5
Q gi|254780381|r 20 RQKIVSEN-IANA-----STPNYRAKDISSFETILNQNFLMARTHETHLKESDSSGLHWNAHVIEAPLDQTTGVQVSG-N 92 (130)
Q Consensus 20 R~~via~N-IANa-----dTPgYk~~dv~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-n 92 (130)
=..++.+| ++++ ++-.-+..+...|.+.|...+..-..+..... . -.+-..-| .
T Consensus 14 ~~~~~~~n~l~~~~~~~~~~~~~~~~~~~~F~~~L~~Si~~~n~sQ~~~~--~-----------------~~~~~~~g~~ 74 (114)
T TIGR00205 14 FEELNTQNQLRTAVNEVSSKSKAQDSDIKSFSDLLKNSIDELNESQLASD--K-----------------VTEKLALGEK 74 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--H-----------------HHHHHHCCCC
T ss_conf 47765200245789876433046777520289999999998868899999--9-----------------9999861998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2008999999999999999999999999999999636
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.|||++=|+.+.++.+.-++.+++-++...=|+-.|+
T Consensus 75 ~~~l~~v~ia~~KA~~sl~~~~~vrnk~v~AYqei~~ 111 (114)
T TIGR00205 75 SVDLHDVMIAMQKASVSLKLLLEVRNKAVKAYQEIMR 111 (114)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8678899999998869999999999999999999962
No 117
>PRK00253 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=50.63 E-value=18 Score=16.32 Aligned_cols=42 Identities=10% Similarity=0.155 Sum_probs=34.6
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 44765-2008999999999999999999999999999999636
Q gi|254780381|r 88 QVSGN-TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 88 ~~dgn-~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
..-|. +|||.+-|+.+-++.+.+++.+++=++-.+-|+-..|
T Consensus 60 ~~~G~~~v~l~~vMIa~qkA~lsfq~~~qVRNK~v~AYqEIM~ 102 (105)
T PRK00253 60 FELGDPGVDLNDVMIALQKASVSFQAGIQVRNKLVAAYQEIMN 102 (105)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9869998879999999999888999999999999999999982
No 118
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=49.15 E-value=19 Score=16.19 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2008999999999999999999999999
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKL 120 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~ 120 (130)
.||+.++++++...+..|||..+++.+-
T Consensus 251 D~D~Aeai~~l~~~~~~lqAal~~~aki 278 (287)
T PRK08073 251 DVDLAVAISDLAYINATYEATLKAVSTM 278 (287)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5469999999999999999999999987
No 119
>PRK06663 flagellar hook-associated protein FlgL; Validated
Probab=47.50 E-value=21 Score=16.04 Aligned_cols=28 Identities=7% Similarity=0.165 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2008999999999999999999999999
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKL 120 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~ 120 (130)
.+|+.++++++...+..|||..+++.+-
T Consensus 383 DaD~a~~it~l~~~~~~~qAa~~~~a~i 410 (420)
T PRK06663 383 DLDVTKAITNLKMLELAHQVSLGVSAKI 410 (420)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5239999999999999999999999987
No 120
>PRK07192 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=41.17 E-value=26 Score=15.49 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20089999999999999999999999999
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLN 121 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~ 121 (130)
.||+.++++++...+..|||..+++.+-.
T Consensus 269 d~D~a~a~t~l~~~q~~~qAs~~~~a~i~ 297 (305)
T PRK07192 269 DLDYAEAYTDLSNQMAALEATQKTFVKVN 297 (305)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55799999999999999999999999881
No 121
>pfam05409 Peptidase_C30 Coronavirus endopeptidase C30. Corresponds to Merops family C30. These peptidases are involved in viral polyprotein processing in replication.
Probab=40.00 E-value=9.4 Score=17.85 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=14.1
Q ss_pred HHHCCCCCCCCCCCCCC
Q ss_conf 31001377765332210
Q gi|254780381|r 27 NIANASTPNYRAKDISS 43 (130)
Q Consensus 27 NIANadTPgYk~~dv~~ 43 (130)
+.+|.+||.|+-+.+.+
T Consensus 64 ~~~N~~TPky~F~~~kp 80 (293)
T pfam05409 64 NQANPNTPKYKFRTVKP 80 (293)
T ss_pred ECCCCCCCCEEEEECCC
T ss_conf 33689999637895378
No 122
>pfam06589 CRA Circumsporozoite-related antigen (CRA). This family consists of several circumsporozoite-related antigen (CRA) or exported protein-1 (EXP1) sequences found specifically in Plasmodium species. The function of this family is unknown.
Probab=28.31 E-value=43 Score=14.32 Aligned_cols=37 Identities=30% Similarity=0.281 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0089999999999999999999999999999996369
Q gi|254780381|r 94 VGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 94 Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
|--|+|.+++.++.-.|...+.++-...+....+|-|
T Consensus 57 vrkeeelv~~tk~k~~~k~~~~~la~al~vvsavllg 93 (157)
T pfam06589 57 VRKEEELVKLTKNKSSYKLATVVLATALGVVSAVLLG 93 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9879999998750456778999999999999999855
No 123
>PTZ00264 circumsporozoite-related antigen; Provisional
Probab=27.47 E-value=45 Score=14.23 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0089999999999999999999999999999996369
Q gi|254780381|r 94 VGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 94 Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
|--|+|.+++.++...|.....++-...+....+|-|
T Consensus 58 vkKEEElv~~~K~K~~~k~a~~~LA~aL~vVSavLlG 94 (162)
T PTZ00264 58 IKKEEELVEMNKKKSKYKLATSVLAGALGVVSAVLLG 94 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9879999998751567778999999999999999855
Done!