RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780381|ref|YP_003064794.1| flagellar basal body rod
protein FlgB [Candidatus Liberibacter asiaticus str. psy62]
         (130 letters)



>d2es9a1 a.247.1.1 (A:11-107) Hypothetical protein YoaC {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 97

 Score = 24.2 bits (52), Expect = 3.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 76  VIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYEL 112
            IE  LD   G+  S +     +E    G +KYL++L
Sbjct: 2   AIEKALDFIGGMNTSASVPHSMDESTAKGILKYLHDL 38


>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 100

 Score = 23.7 bits (51), Expect = 5.8
 Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 86  GVQVSGNTVGITNELYKSGHIKYLYELNTKLIK 118
            V +SG +V +T  L    ++K  +E N + + 
Sbjct: 9   KVSISGTSVELTCPLDSDENLK--WEKNGQELP 39


>d1n45a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 214

 Score = 23.1 bits (49), Expect = 8.4
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 107 KYLYELNTKLIKKLNSMVMH 126
           K  + LN +L ++L  ++ H
Sbjct: 195 KTAFLLNIQLFEELQELLTH 214


>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate
           phosphoribosyltransferase EF2626 {Enterococcus faecalis
           [TaxId: 1351]}
          Length = 345

 Score = 23.0 bits (49), Expect = 9.3
 Identities = 4/18 (22%), Positives = 8/18 (44%)

Query: 109 LYELNTKLIKKLNSMVMH 126
            +     L++K+   V H
Sbjct: 328 CWNHKMNLLEKVRKDVKH 345


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 435,074
Number of extensions: 16312
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 12
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.6 bits)