BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780381|ref|YP_003064794.1| flagellar basal body rod
protein FlgB [Candidatus Liberibacter asiaticus str. psy62]
         (130 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780381|ref|YP_003064794.1| flagellar basal body rod protein FlgB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 130

 Score =  271 bits (692), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHET 60
           MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHET
Sbjct: 1   MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHET 60

Query: 61  HLKESDSSGLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKL 120
           HLKESDSSGLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKL
Sbjct: 61  HLKESDSSGLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKL 120

Query: 121 NSMVMHVVRG 130
           NSMVMHVVRG
Sbjct: 121 NSMVMHVVRG 130


>gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 134

 Score = 28.5 bits (62), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 8/38 (21%)

Query: 18 SERQKIVSENIANA----STPN---YRAKDISSFETIL 48
          S R +I+SENIANA     TP    YR K I SFE ++
Sbjct: 19 SARMQIISENIANARTTGDTPGSDPYRRKTI-SFEEVM 55


>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 753

 Score = 22.3 bits (46), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 7   FQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHET 60
           +QI S+  N L+E++KI S   +     N  A +I   + I +++  + R   T
Sbjct: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498


>gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 421

 Score = 22.3 bits (46), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 18 SERQKIVSENIANASTPNYRAKDIS 42
          S R   VS+NIAN  T  Y+   I+
Sbjct: 18 SNRVSAVSDNIANVDTVGYKRTAIA 42


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.128    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,222
Number of Sequences: 1233
Number of extensions: 2860
Number of successful extensions: 7
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 130
length of database: 328,796
effective HSP length: 65
effective length of query: 65
effective length of database: 248,651
effective search space: 16162315
effective search space used: 16162315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)