BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780381|ref|YP_003064794.1| flagellar basal body rod protein FlgB [Candidatus Liberibacter asiaticus str. psy62] (130 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780381|ref|YP_003064794.1| flagellar basal body rod protein FlgB [Candidatus Liberibacter asiaticus str. psy62] Length = 130 Score = 271 bits (692), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 130/130 (100%), Positives = 130/130 (100%) Query: 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHET 60 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHET Sbjct: 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHET 60 Query: 61 HLKESDSSGLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKL 120 HLKESDSSGLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKL Sbjct: 61 HLKESDSSGLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKL 120 Query: 121 NSMVMHVVRG 130 NSMVMHVVRG Sbjct: 121 NSMVMHVVRG 130 >gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter asiaticus str. psy62] Length = 134 Score = 28.5 bits (62), Expect = 0.041, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 8/38 (21%) Query: 18 SERQKIVSENIANA----STPN---YRAKDISSFETIL 48 S R +I+SENIANA TP YR K I SFE ++ Sbjct: 19 SARMQIISENIANARTTGDTPGSDPYRRKTI-SFEEVM 55 >gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 753 Score = 22.3 bits (46), Expect = 2.9, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%) Query: 7 FQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHET 60 +QI S+ N L+E++KI S + N A +I + I +++ + R T Sbjct: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498 >gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] Length = 421 Score = 22.3 bits (46), Expect = 3.0, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 18 SERQKIVSENIANASTPNYRAKDIS 42 S R VS+NIAN T Y+ I+ Sbjct: 18 SNRVSAVSDNIANVDTVGYKRTAIA 42 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.315 0.128 0.365 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,222 Number of Sequences: 1233 Number of extensions: 2860 Number of successful extensions: 7 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 5 length of query: 130 length of database: 328,796 effective HSP length: 65 effective length of query: 65 effective length of database: 248,651 effective search space: 16162315 effective search space used: 16162315 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 33 (17.3 bits)